Wall clock time and date at job start Thu Apr 9 2020 12:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39708 * 120.12420 * 245.14323 * 3 2 1 5 5 C 1.37829 * 119.87420 * 179.97438 * 4 3 2 6 6 C 1.38660 * 120.12409 * 0.03286 * 5 4 3 7 7 F 1.35103 * 119.87488 * 179.97438 * 6 5 4 8 8 C 1.38615 * 120.25353 * 359.97438 * 6 5 4 9 9 C 1.50701 * 119.93975 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47212 * 280.00136 * 9 8 6 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47592 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00057 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00356 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99989 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00117 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47306 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47019 * 120.00329 * 16 14 12 19 19 H 1.48498 * 109.47326 * 240.00104 * 16 14 12 20 20 C 1.37873 * 120.12409 * 0.25496 * 8 6 5 21 21 H 1.08000 * 120.06267 * 359.97438 * 4 3 2 22 22 H 1.08001 * 119.93840 * 180.02562 * 5 4 3 23 23 H 1.09002 * 109.47060 * 40.00191 * 9 8 6 24 24 H 1.09001 * 109.47380 * 160.00278 * 9 8 6 25 25 H 1.09002 * 109.47153 * 299.99998 * 10 9 8 26 26 H 1.08998 * 109.47533 * 59.99628 * 10 9 8 27 27 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 28 28 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 29 29 H 0.96996 * 119.99885 * 179.97438 * 15 14 12 30 30 H 1.07998 * 120.06421 * 179.72709 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 0.5089 1.0964 5 6 4.6472 0.5065 1.0912 6 6 5.3381 0.0015 0.0002 7 9 6.6891 0.0021 0.0002 8 6 4.6479 -0.5039 -1.0905 9 6 5.4060 -1.0504 -2.2728 10 6 5.8779 0.1068 -3.1553 11 6 6.6480 -0.4479 -4.3552 12 6 7.1123 0.6919 -5.2248 13 1 6.8816 1.7103 -4.9490 14 6 7.8326 0.4348 -6.3720 15 7 8.1140 -0.8053 -6.7077 16 14 8.4075 1.8477 -7.4503 17 1 7.9646 3.1351 -6.8572 18 1 9.8896 1.8293 -7.5418 19 1 7.8259 1.7021 -8.8089 20 6 3.2692 -0.5022 -1.0982 21 1 2.7318 0.9029 1.9465 22 1 5.1901 0.8988 1.9384 23 1 6.2696 -1.6149 -1.9212 24 1 4.7544 -1.7058 -2.8508 25 1 5.0142 0.6713 -3.5069 26 1 6.5294 0.7623 -2.5774 27 1 7.5117 -1.0121 -4.0033 28 1 5.9967 -1.1035 -4.9334 29 1 8.6204 -0.9861 -7.5150 30 1 2.7325 -0.8922 -1.9504 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250067205.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:55 Heat of formation + Delta-G solvation = -16.734766 kcal Electronic energy + Delta-G solvation = -14855.775777 eV Core-core repulsion = 12143.728886 eV Total energy + Delta-G solvation = -2712.046891 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.92595 -39.55566 -36.63164 -34.92105 -32.79432 -31.17103 -30.55206 -26.97001 -24.01603 -23.75517 -22.03460 -20.27199 -18.41991 -17.65032 -16.80132 -16.23160 -15.63246 -14.65326 -14.44223 -14.13287 -14.07283 -13.80958 -13.73863 -13.49211 -12.69844 -12.58147 -12.51398 -12.12188 -11.75464 -11.33625 -11.20326 -10.82746 -10.73159 -10.48995 -9.73138 -9.49728 -9.19506 -9.04523 -8.64432 -8.35348 -6.00377 -4.02529 0.46978 1.01084 2.47829 2.67298 3.31155 3.38789 3.42969 3.58411 3.66421 4.09148 4.45702 4.51856 4.59542 4.89896 5.10197 5.35697 5.41982 5.59816 5.71791 5.84022 5.91998 5.98358 6.11496 6.24305 6.60832 6.67622 6.80596 7.08553 7.29173 7.66808 7.80287 7.99558 8.42165 9.04701 9.61763 11.10992 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.032445 B = 0.004942 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.788062 B = 5664.661975 C = 6069.999658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.261 3.739 3 C -0.044 4.044 4 C -0.054 4.054 5 C -0.155 4.155 6 C 0.133 3.867 7 F -0.125 7.125 8 C -0.100 4.100 9 C -0.086 4.086 10 C -0.105 4.105 11 C 0.021 3.979 12 C -0.520 4.520 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.042 4.042 21 H 0.139 0.861 22 H 0.144 0.856 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.017 0.983 28 H 0.017 0.983 29 H 0.260 0.740 30 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.923 0.652 15.366 16.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.054 4.054 3 C -0.048 4.048 4 C -0.075 4.075 5 C -0.174 4.174 6 C 0.112 3.888 7 F -0.103 7.103 8 C -0.101 4.101 9 C -0.124 4.124 10 C -0.142 4.142 11 C -0.016 4.016 12 C -0.558 4.558 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.062 4.062 21 H 0.157 0.843 22 H 0.162 0.838 23 H 0.095 0.905 24 H 0.096 0.904 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.036 0.964 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.547 0.551 15.230 17.473 hybrid contribution 1.084 0.749 -0.672 1.479 sum -7.463 1.301 14.558 16.412 Atomic orbital electron populations 1.81254 1.12039 1.08839 1.07628 1.25615 0.92524 0.93579 0.93702 1.15985 0.84442 1.06958 0.97418 1.20898 0.93121 0.96546 0.96891 1.21035 0.94316 1.03287 0.98766 1.17869 0.77411 0.98602 0.94881 1.91558 1.28419 1.93749 1.96586 1.20224 0.93785 0.99972 0.96155 1.20826 0.99287 0.99666 0.92573 1.21653 0.99753 0.95570 0.97274 1.19114 0.94921 0.96379 0.91225 1.21288 1.34059 0.93231 1.07223 0.92656 1.25019 0.96145 0.95497 0.97779 1.69971 1.40029 1.18354 1.25169 0.86558 0.78444 0.82691 0.80448 1.19738 1.21008 1.21026 1.21027 0.92685 0.95824 0.96687 0.84322 0.83813 0.90489 0.90436 0.93071 0.93080 0.96448 0.96499 0.93066 0.83924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.68 18.54 41.84 0.78 -4.91 16 2 C 0.26 2.95 15.33 -22.47 -0.34 2.60 16 3 C -0.04 -0.44 5.73 -106.89 -0.61 -1.05 16 4 C -0.05 -0.45 9.75 -39.18 -0.38 -0.83 16 5 C -0.16 -1.41 10.01 -39.58 -0.40 -1.81 16 6 C 0.13 1.61 7.25 -39.29 -0.28 1.32 16 7 F -0.12 -1.76 16.65 2.25 0.04 -1.72 16 8 C -0.10 -1.28 5.14 -104.62 -0.54 -1.81 16 9 C -0.09 -1.32 5.06 -27.88 -0.14 -1.47 16 10 C -0.10 -2.05 5.13 -26.74 -0.14 -2.19 16 11 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 12 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 13 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 16 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 C -0.04 -0.46 9.37 -39.18 -0.37 -0.82 16 21 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 22 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 23 H 0.08 1.20 7.94 -51.93 -0.41 0.79 16 24 H 0.08 1.11 8.00 -51.93 -0.42 0.70 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.14 1.40 8.03 -52.49 -0.42 0.98 16 LS Contribution 280.35 15.07 4.22 4.22 Total: -1.00 -30.79 280.35 -6.33 -37.12 By element: Atomic # 1 Polarization: -2.89 SS G_CDS: -3.33 Total: -6.21 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -3.75 Total: -19.05 kcal Atomic # 7 Polarization: -32.40 SS G_CDS: 1.51 Total: -30.89 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.79 -6.33 -37.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250067205.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.381 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds