Wall clock time and date at job start Thu Apr 9 2020 12:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39708 * 120.12420 * 245.14323 * 3 2 1 5 5 C 1.37829 * 119.87420 * 179.97438 * 4 3 2 6 6 C 1.38660 * 120.12409 * 0.03286 * 5 4 3 7 7 F 1.35103 * 119.87488 * 179.97438 * 6 5 4 8 8 C 1.38615 * 120.25353 * 359.97438 * 6 5 4 9 9 C 1.50701 * 119.93975 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47212 * 280.00136 * 9 8 6 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47592 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00057 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00356 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99989 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00117 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47306 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47019 * 120.00329 * 16 14 12 19 19 H 1.48498 * 109.47326 * 240.00104 * 16 14 12 20 20 C 1.37873 * 120.12409 * 0.25496 * 8 6 5 21 21 H 1.08000 * 120.06267 * 359.97438 * 4 3 2 22 22 H 1.08001 * 119.93840 * 180.02562 * 5 4 3 23 23 H 1.09002 * 109.47060 * 40.00191 * 9 8 6 24 24 H 1.09001 * 109.47380 * 160.00278 * 9 8 6 25 25 H 1.09002 * 109.47153 * 299.99998 * 10 9 8 26 26 H 1.08998 * 109.47533 * 59.99628 * 10 9 8 27 27 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 28 28 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 29 29 H 0.96996 * 119.99885 * 179.97438 * 15 14 12 30 30 H 1.07998 * 120.06421 * 179.72709 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 0.5089 1.0964 5 6 4.6472 0.5065 1.0912 6 6 5.3381 0.0015 0.0002 7 9 6.6891 0.0021 0.0002 8 6 4.6479 -0.5039 -1.0905 9 6 5.4060 -1.0504 -2.2728 10 6 5.8779 0.1068 -3.1553 11 6 6.6480 -0.4479 -4.3552 12 6 7.1123 0.6919 -5.2248 13 1 6.8816 1.7103 -4.9490 14 6 7.8326 0.4348 -6.3720 15 7 8.1140 -0.8053 -6.7077 16 14 8.4075 1.8477 -7.4503 17 1 7.9646 3.1351 -6.8572 18 1 9.8896 1.8293 -7.5418 19 1 7.8259 1.7021 -8.8089 20 6 3.2692 -0.5022 -1.0982 21 1 2.7318 0.9029 1.9465 22 1 5.1901 0.8988 1.9384 23 1 6.2696 -1.6149 -1.9212 24 1 4.7544 -1.7058 -2.8508 25 1 5.0142 0.6713 -3.5069 26 1 6.5294 0.7623 -2.5774 27 1 7.5117 -1.0121 -4.0033 28 1 5.9967 -1.1035 -4.9334 29 1 8.6204 -0.9861 -7.5150 30 1 2.7325 -0.8922 -1.9504 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250067205.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:55 Heat of formation + Delta-G solvation = -32.812912 kcal Electronic energy + Delta-G solvation = -14856.472977 eV Core-core repulsion = 12143.728886 eV Total energy + Delta-G solvation = -2712.744091 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.091 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.91460 -40.42276 -37.62382 -36.43929 -34.59481 -32.15427 -31.89700 -28.58049 -25.54394 -24.73105 -23.16779 -21.94561 -19.39294 -18.57095 -18.31963 -17.72942 -16.66473 -16.47027 -15.58063 -15.40139 -15.00476 -14.80946 -14.72018 -14.62165 -14.22174 -13.93230 -13.66839 -13.37430 -13.04995 -12.98875 -12.59711 -12.48229 -12.34093 -12.04201 -11.45505 -11.30189 -11.14077 -10.53823 -9.97970 -9.63319 -8.18527 -6.29122 -0.37979 0.21197 1.40823 1.41258 1.54380 1.58723 1.79487 2.42321 2.74371 2.79310 3.14835 3.24873 3.65334 3.77050 4.08197 4.19961 4.40556 4.50081 4.64815 4.77555 4.95615 4.96251 5.05578 5.18650 5.25796 5.27527 5.31808 5.55203 5.74743 5.79033 5.89181 6.27778 6.41648 6.88271 7.40129 8.93328 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.032445 B = 0.004942 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.788062 B = 5664.661975 C = 6069.999658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.285 3.715 3 C -0.044 4.044 4 C -0.031 4.031 5 C -0.143 4.143 6 C 0.116 3.884 7 F -0.142 7.142 8 C -0.119 4.119 9 C -0.077 4.077 10 C -0.091 4.091 11 C 0.022 3.978 12 C -0.542 4.542 13 H 0.058 0.942 14 C 0.000 4.000 15 N -0.933 5.933 16 Si 0.962 3.038 17 H -0.263 1.263 18 H -0.278 1.278 19 H -0.278 1.278 20 C -0.038 4.038 21 H 0.175 0.825 22 H 0.174 0.826 23 H 0.067 0.933 24 H 0.084 0.916 25 H 0.055 0.945 26 H 0.045 0.955 27 H -0.009 1.009 28 H -0.003 1.003 29 H 0.263 0.737 30 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.608 2.072 16.753 18.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.030 4.030 3 C -0.048 4.048 4 C -0.051 4.051 5 C -0.162 4.162 6 C 0.096 3.904 7 F -0.120 7.120 8 C -0.120 4.120 9 C -0.115 4.115 10 C -0.129 4.129 11 C -0.015 4.015 12 C -0.580 4.580 13 H 0.076 0.924 14 C -0.198 4.198 15 N -0.574 5.574 16 Si 0.787 3.213 17 H -0.187 1.187 18 H -0.204 1.204 19 H -0.203 1.203 20 C -0.059 4.059 21 H 0.192 0.808 22 H 0.191 0.809 23 H 0.086 0.914 24 H 0.102 0.898 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.010 0.990 28 H 0.015 0.985 29 H 0.072 0.928 30 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.240 1.974 16.629 19.126 hybrid contribution 1.287 0.286 -1.052 1.687 sum -7.953 2.260 15.577 17.636 Atomic orbital electron populations 1.81291 1.13197 1.10275 1.08916 1.25649 0.92443 0.92381 0.92522 1.15986 0.83662 1.07359 0.97792 1.21287 0.92771 0.94185 0.96906 1.21318 0.94574 1.01915 0.98348 1.18213 0.76851 0.99457 0.95911 1.91518 1.29772 1.94011 1.96737 1.19904 0.94271 1.02080 0.95720 1.20568 0.99533 0.98076 0.93292 1.21403 0.98953 0.96825 0.95686 1.19038 0.94201 0.95323 0.92940 1.21749 1.34252 0.94059 1.07987 0.92387 1.25951 0.96220 0.98249 0.99340 1.70097 1.40799 1.20586 1.25880 0.85440 0.77998 0.79463 0.78406 1.18663 1.20400 1.20345 1.21044 0.91949 0.95500 0.97372 0.80797 0.80905 0.91398 0.89783 0.92662 0.93661 0.99028 0.98503 0.92804 0.83270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.66 18.54 19.00 0.35 -11.30 16 2 C 0.28 5.76 15.33 88.33 1.35 7.11 16 3 C -0.04 -0.75 5.73 -21.33 -0.12 -0.87 16 4 C -0.03 -0.39 9.75 22.53 0.22 -0.17 16 5 C -0.14 -2.09 10.01 22.27 0.22 -1.87 16 6 C 0.12 2.62 7.25 22.46 0.16 2.79 16 7 F -0.14 -3.92 16.65 44.97 0.75 -3.17 16 8 C -0.12 -2.90 5.14 -19.86 -0.10 -3.00 16 9 C -0.08 -2.41 5.06 29.85 0.15 -2.26 16 10 C -0.09 -3.62 5.13 30.59 0.16 -3.47 16 11 C 0.02 1.15 4.97 29.84 0.15 1.30 16 12 C -0.54 -30.95 9.11 25.60 0.23 -30.72 16 13 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 14 C 0.00 0.00 5.46 84.65 0.46 0.46 16 15 N -0.93 -56.79 13.29 21.45 0.28 -56.51 16 16 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 17 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 20 C -0.04 -0.77 9.37 22.53 0.21 -0.56 16 21 H 0.17 1.02 8.06 -2.91 -0.02 0.99 16 22 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 23 H 0.07 2.20 7.94 -2.39 -0.02 2.18 16 24 H 0.08 2.44 8.00 -2.39 -0.02 2.42 16 25 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 27 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 28 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 29 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 30 H 0.15 2.73 8.03 -2.91 -0.02 2.71 16 Total: -1.00 -67.50 280.35 7.65 -59.85 By element: Atomic # 1 Polarization: -5.11 SS G_CDS: 1.14 Total: -3.97 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: 3.10 Total: -31.25 kcal Atomic # 7 Polarization: -68.45 SS G_CDS: 0.64 Total: -67.81 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.75 Total: -3.17 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -67.50 7.65 -59.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250067205.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.034 kcal (2) G-P(sol) polarization free energy of solvation -67.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds