Wall clock time and date at job start Thu Apr 9 2020 12:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38626 * 120.40528 * 2 1 4 4 C 1.38581 * 118.55912 * 179.97438 * 3 2 1 5 5 N 1.32286 * 119.20054 * 0.02562 * 4 3 2 6 6 C 1.32489 * 120.74138 * 359.97438 * 5 4 3 7 7 N 1.38395 * 119.21526 * 180.02562 * 6 5 4 8 8 C 1.46504 * 120.00570 * 354.93984 * 7 6 5 9 9 C 1.53001 * 109.47303 * 185.09563 * 8 7 6 10 10 C 1.50695 * 115.55261 * 39.78027 * 9 8 7 11 11 H 1.08001 * 120.00454 * 264.77896 * 10 9 8 12 12 C 1.37878 * 119.99988 * 84.77359 * 10 9 8 13 13 N 1.31516 * 120.00209 * 184.86781 * 12 10 9 14 14 Si 1.86800 * 119.99842 * 4.87277 * 12 10 9 15 15 H 1.48504 * 109.47429 * 94.79222 * 14 12 10 16 16 H 1.48504 * 109.47287 * 214.79632 * 14 12 10 17 17 H 1.48506 * 109.47083 * 334.79579 * 14 12 10 18 18 C 1.52999 * 117.49789 * 254.07842 * 9 8 7 19 19 C 1.52999 * 117.49787 * 185.45544 * 9 8 7 20 20 N 1.32266 * 120.39825 * 179.97438 * 2 1 3 21 21 H 1.08998 * 109.46502 * 270.02307 * 1 2 3 22 22 H 1.08999 * 109.46597 * 30.01833 * 1 2 3 23 23 H 1.08994 * 109.47108 * 150.02210 * 1 2 3 24 24 H 1.08004 * 120.71903 * 359.95796 * 3 2 1 25 25 H 1.07996 * 120.40072 * 179.97438 * 4 3 2 26 26 H 0.97005 * 119.99620 * 174.94330 * 7 6 5 27 27 H 1.08999 * 109.46824 * 305.09244 * 8 7 6 28 28 H 1.08990 * 109.46887 * 65.09342 * 8 7 6 29 29 H 0.97006 * 119.99657 * 180.02562 * 13 12 10 30 30 H 1.09004 * 117.49768 * 359.97438 * 18 9 8 31 31 H 1.08995 * 117.50060 * 145.01680 * 18 9 8 32 32 H 1.09001 * 117.49959 * 214.97425 * 19 9 8 33 33 H 1.08996 * 117.49971 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2086 1.1956 0.0000 4 6 3.5937 1.1510 0.0005 5 7 4.2016 -0.0240 0.0005 6 6 3.5014 -1.1487 0.0005 7 7 4.1698 -2.3605 0.0010 8 6 5.6302 -2.3917 -0.1103 9 6 6.1031 -3.8432 -0.2130 10 6 5.2482 -4.7467 -1.0637 11 1 4.4826 -5.3550 -0.6051 12 6 5.4431 -4.7967 -2.4278 13 7 4.6362 -5.5108 -3.1817 14 14 6.8536 -3.8501 -3.2049 15 1 8.0275 -4.7469 -3.3568 16 1 6.4376 -3.3488 -4.5394 17 1 7.2173 -2.7018 -2.3361 18 6 6.7722 -4.4570 1.0184 19 6 7.6119 -4.0966 -0.2087 20 7 2.1763 -1.1408 0.0005 21 1 -0.3632 0.0004 1.0277 22 1 -0.3632 0.8898 -0.5141 23 1 -0.3633 -0.8901 -0.5135 24 1 1.6871 2.1414 -0.0007 25 1 4.1699 2.0643 0.0001 26 1 3.6712 -3.1894 0.0751 27 1 5.9384 -1.8453 -1.0017 28 1 6.0718 -1.9273 0.7713 29 1 4.7737 -5.5462 -4.1413 30 1 6.8759 -3.8266 1.9016 31 1 6.5940 -5.5145 1.2135 32 1 7.9862 -4.9171 -0.8210 33 1 8.2677 -3.2293 -0.1332 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380326352.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:05 Heat of formation + Delta-G solvation = 77.020435 kcal Electronic energy + Delta-G solvation = -15986.675049 eV Core-core repulsion = 13434.446745 eV Total energy + Delta-G solvation = -2552.228304 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.47407 -37.46044 -34.82847 -33.66008 -32.15846 -30.96439 -28.10500 -26.36232 -25.16607 -23.23675 -21.77942 -21.48143 -19.23130 -17.49361 -16.70252 -16.11157 -15.22576 -15.12496 -14.78646 -14.24746 -13.87278 -13.42189 -13.19328 -12.84888 -12.80955 -12.47568 -12.21691 -12.13832 -11.15455 -10.86575 -10.54853 -10.48573 -10.27352 -10.20247 -9.78129 -9.54840 -9.14853 -8.69034 -8.61166 -8.51106 -7.39561 -6.17198 -4.22109 1.56058 1.64311 3.26476 3.37310 3.41926 3.53429 4.32191 4.39055 4.54249 4.77746 4.87246 5.12225 5.22148 5.49915 5.53152 5.61316 5.65219 5.73365 5.98095 6.01463 6.07303 6.15062 6.29283 6.43575 6.46999 6.68610 6.75772 6.94396 7.07062 7.40861 7.64271 7.76739 8.21831 8.40229 8.83513 8.92934 9.46093 10.93667 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.028040 B = 0.007541 C = 0.007058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.342949 B = 3712.072977 C = 3966.035361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.217 3.783 3 C -0.317 4.317 4 C 0.192 3.808 5 N -0.580 5.580 6 C 0.570 3.430 7 N -0.659 5.659 8 C 0.171 3.829 9 C -0.017 4.017 10 C -0.494 4.494 11 H 0.079 0.921 12 C 0.083 3.917 13 N -0.891 5.891 14 Si 0.877 3.123 15 H -0.279 1.279 16 H -0.295 1.295 17 H -0.253 1.253 18 C -0.179 4.179 19 C -0.192 4.192 20 N -0.575 5.575 21 H 0.080 0.920 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.134 0.866 25 H 0.159 0.841 26 H 0.423 0.577 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.265 0.735 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.963 11.919 6.209 13.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.067 3.933 3 C -0.344 4.344 4 C 0.023 3.977 5 N -0.305 5.305 6 C 0.213 3.787 7 N -0.292 5.292 8 C 0.047 3.953 9 C -0.019 4.019 10 C -0.531 4.531 11 H 0.097 0.903 12 C -0.120 4.120 13 N -0.527 5.527 14 Si 0.705 3.295 15 H -0.205 1.205 16 H -0.222 1.222 17 H -0.177 1.177 18 C -0.216 4.216 19 C -0.229 4.229 20 N -0.299 5.299 21 H 0.099 0.901 22 H 0.095 0.905 23 H 0.099 0.901 24 H 0.152 0.848 25 H 0.176 0.824 26 H 0.264 0.736 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.267 10.869 5.998 12.620 hybrid contribution 0.216 0.954 -0.637 1.167 sum -2.052 11.823 5.361 13.143 Atomic orbital electron populations 1.20739 0.88656 1.03614 1.03133 1.21332 0.96713 0.87736 0.87559 1.22140 0.96338 0.99589 1.16380 1.22794 0.91927 0.95042 0.87902 1.67992 1.40823 0.98080 1.23555 1.19492 0.84836 0.87109 0.87233 1.44424 1.07364 1.03583 1.73816 1.21000 0.77905 0.96849 0.99571 1.19636 0.91613 0.92565 0.98050 1.20152 1.18390 1.23734 0.90853 0.90295 1.24963 0.95750 0.94307 0.97014 1.69903 1.36911 1.40321 1.05540 0.86885 0.82716 0.81420 0.78495 1.20531 1.22163 1.17720 1.22910 1.06374 1.00993 0.91355 1.22933 0.95215 1.02281 1.02508 1.67778 1.07903 1.30728 1.23517 0.90131 0.90524 0.90146 0.84825 0.82421 0.73640 0.92214 0.93607 0.92494 0.90839 0.89460 0.89334 0.90717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 10.22 36.01 0.37 -0.78 16 2 C 0.22 3.34 6.82 -82.26 -0.56 2.78 16 3 C -0.32 -4.27 9.85 -39.31 -0.39 -4.66 16 4 C 0.19 2.83 11.30 -17.23 -0.19 2.64 16 5 N -0.58 -10.98 9.59 -13.94 -0.13 -11.12 16 6 C 0.57 11.72 8.42 -322.81 -2.72 9.00 16 7 N -0.66 -14.21 5.44 -62.31 -0.34 -14.55 16 8 C 0.17 3.67 5.55 -4.04 -0.02 3.65 16 9 C -0.02 -0.39 1.13 -155.66 -0.18 -0.57 16 10 C -0.49 -13.20 8.09 -34.44 -0.28 -13.48 16 11 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 12 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 13 N -0.89 -26.68 13.96 55.43 0.77 -25.91 16 14 Si 0.88 21.61 25.19 -169.99 -4.28 17.33 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 17 H -0.25 -5.92 5.23 56.52 0.30 -5.63 16 18 C -0.18 -3.53 9.88 -26.73 -0.26 -3.79 16 19 C -0.19 -3.96 7.33 -26.73 -0.20 -4.15 16 20 N -0.57 -11.11 10.40 -10.15 -0.11 -11.22 16 21 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.08 0.65 8.09 -51.93 -0.42 0.22 16 23 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 25 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 26 H 0.42 9.48 7.67 -40.82 -0.31 9.17 16 27 H 0.06 1.37 6.66 -51.93 -0.35 1.03 16 28 H 0.05 0.92 7.95 -51.93 -0.41 0.50 16 29 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 31 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 32 H 0.09 1.90 7.13 -51.93 -0.37 1.53 16 33 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 278.71 15.07 4.20 4.20 Total: -1.00 -30.79 278.71 -8.90 -39.69 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -4.48 Total: 8.69 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -4.53 Total: -7.12 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: 0.20 Total: -62.79 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.28 Total: 17.33 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.79 -8.90 -39.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380326352.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.710 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds