Wall clock time and date at job start Thu Apr 9 2020 12:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38626 * 120.40528 * 2 1 4 4 C 1.38581 * 118.55912 * 179.97438 * 3 2 1 5 5 N 1.32286 * 119.20054 * 0.02562 * 4 3 2 6 6 C 1.32489 * 120.74138 * 359.97438 * 5 4 3 7 7 N 1.38395 * 119.21526 * 180.02562 * 6 5 4 8 8 C 1.46504 * 120.00570 * 354.93984 * 7 6 5 9 9 C 1.53001 * 109.47303 * 185.09563 * 8 7 6 10 10 C 1.50695 * 115.55261 * 39.78027 * 9 8 7 11 11 H 1.08001 * 120.00454 * 264.77896 * 10 9 8 12 12 C 1.37878 * 119.99988 * 84.77359 * 10 9 8 13 13 N 1.31516 * 120.00209 * 184.86781 * 12 10 9 14 14 Si 1.86800 * 119.99842 * 4.87277 * 12 10 9 15 15 H 1.48504 * 109.47429 * 94.79222 * 14 12 10 16 16 H 1.48504 * 109.47287 * 214.79632 * 14 12 10 17 17 H 1.48506 * 109.47083 * 334.79579 * 14 12 10 18 18 C 1.52999 * 117.49789 * 254.07842 * 9 8 7 19 19 C 1.52999 * 117.49787 * 185.45544 * 9 8 7 20 20 N 1.32266 * 120.39825 * 179.97438 * 2 1 3 21 21 H 1.08998 * 109.46502 * 270.02307 * 1 2 3 22 22 H 1.08999 * 109.46597 * 30.01833 * 1 2 3 23 23 H 1.08994 * 109.47108 * 150.02210 * 1 2 3 24 24 H 1.08004 * 120.71903 * 359.95796 * 3 2 1 25 25 H 1.07996 * 120.40072 * 179.97438 * 4 3 2 26 26 H 0.97005 * 119.99620 * 174.94330 * 7 6 5 27 27 H 1.08999 * 109.46824 * 305.09244 * 8 7 6 28 28 H 1.08990 * 109.46887 * 65.09342 * 8 7 6 29 29 H 0.97006 * 119.99657 * 180.02562 * 13 12 10 30 30 H 1.09004 * 117.49768 * 359.97438 * 18 9 8 31 31 H 1.08995 * 117.50060 * 145.01680 * 18 9 8 32 32 H 1.09001 * 117.49959 * 214.97425 * 19 9 8 33 33 H 1.08996 * 117.49971 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2086 1.1956 0.0000 4 6 3.5937 1.1510 0.0005 5 7 4.2016 -0.0240 0.0005 6 6 3.5014 -1.1487 0.0005 7 7 4.1698 -2.3605 0.0010 8 6 5.6302 -2.3917 -0.1103 9 6 6.1031 -3.8432 -0.2130 10 6 5.2482 -4.7467 -1.0637 11 1 4.4826 -5.3550 -0.6051 12 6 5.4431 -4.7967 -2.4278 13 7 4.6362 -5.5108 -3.1817 14 14 6.8536 -3.8501 -3.2049 15 1 8.0275 -4.7469 -3.3568 16 1 6.4376 -3.3488 -4.5394 17 1 7.2173 -2.7018 -2.3361 18 6 6.7722 -4.4570 1.0184 19 6 7.6119 -4.0966 -0.2087 20 7 2.1763 -1.1408 0.0005 21 1 -0.3632 0.0004 1.0277 22 1 -0.3632 0.8898 -0.5141 23 1 -0.3633 -0.8901 -0.5135 24 1 1.6871 2.1414 -0.0007 25 1 4.1699 2.0643 0.0001 26 1 3.6712 -3.1894 0.0751 27 1 5.9384 -1.8453 -1.0017 28 1 6.0718 -1.9273 0.7713 29 1 4.7737 -5.5462 -4.1413 30 1 6.8759 -3.8266 1.9016 31 1 6.5940 -5.5145 1.2135 32 1 7.9862 -4.9171 -0.8210 33 1 8.2677 -3.2293 -0.1332 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380326352.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:05 Heat of formation + Delta-G solvation = 57.805396 kcal Electronic energy + Delta-G solvation = -15987.508276 eV Core-core repulsion = 13434.446745 eV Total energy + Delta-G solvation = -2553.061530 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.75664 -39.13722 -36.25064 -34.92212 -34.27463 -32.26214 -29.17289 -28.14425 -27.00338 -24.46098 -23.34714 -22.83312 -21.05201 -18.95528 -18.28386 -17.75689 -16.92847 -16.32413 -16.23202 -15.89479 -15.09715 -14.99859 -14.81801 -14.56306 -14.06671 -13.87135 -13.68186 -13.10173 -13.05243 -12.73351 -12.19378 -12.02341 -11.73976 -11.60339 -11.47717 -11.13738 -10.97389 -10.59027 -10.29042 -9.95911 -8.83279 -8.32747 -6.39432 0.35490 0.40779 1.30855 1.35776 1.47396 2.09946 2.34352 3.03157 3.03909 3.19652 3.38586 3.77002 3.93899 4.07350 4.34138 4.39918 4.44138 4.54515 4.63884 4.72699 4.80077 4.83748 4.86469 4.98824 5.07814 5.15220 5.23769 5.47995 5.60815 5.67429 6.06412 6.23800 6.34556 6.67393 6.76146 7.31169 7.53247 8.81864 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.028040 B = 0.007541 C = 0.007058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.342949 B = 3712.072977 C = 3966.035361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.194 3.806 3 C -0.295 4.295 4 C 0.179 3.821 5 N -0.602 5.602 6 C 0.547 3.453 7 N -0.679 5.679 8 C 0.188 3.812 9 C -0.047 4.047 10 C -0.480 4.480 11 H 0.038 0.962 12 C 0.027 3.973 13 N -0.943 5.943 14 Si 0.931 3.069 15 H -0.268 1.268 16 H -0.306 1.306 17 H -0.230 1.230 18 C -0.159 4.159 19 C -0.184 4.184 20 N -0.609 5.609 21 H 0.098 0.902 22 H 0.110 0.890 23 H 0.066 0.934 24 H 0.180 0.820 25 H 0.201 0.799 26 H 0.412 0.588 27 H 0.041 0.959 28 H 0.062 0.938 29 H 0.264 0.736 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.284 15.080 7.293 16.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.046 3.954 3 C -0.321 4.321 4 C 0.013 3.987 5 N -0.328 5.328 6 C 0.190 3.810 7 N -0.313 5.313 8 C 0.064 3.936 9 C -0.048 4.048 10 C -0.518 4.518 11 H 0.056 0.944 12 C -0.171 4.171 13 N -0.583 5.583 14 Si 0.757 3.243 15 H -0.193 1.193 16 H -0.234 1.234 17 H -0.153 1.153 18 C -0.196 4.196 19 C -0.222 4.222 20 N -0.335 5.335 21 H 0.116 0.884 22 H 0.128 0.872 23 H 0.085 0.915 24 H 0.198 0.802 25 H 0.217 0.783 26 H 0.249 0.751 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.122 0.878 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.601 14.102 7.113 15.875 hybrid contribution -0.169 0.063 -0.884 0.903 sum -1.771 14.165 6.229 15.575 Atomic orbital electron populations 1.20864 0.85740 1.04570 1.04522 1.22193 0.98740 0.87543 0.86905 1.22651 0.95993 1.00682 1.12766 1.23614 0.93239 0.95032 0.86776 1.67995 1.41599 0.98789 1.24396 1.19628 0.85504 0.87245 0.88615 1.44347 1.07271 1.03805 1.75887 1.20764 0.78197 0.95354 0.99315 1.19553 0.92526 0.92773 0.99937 1.20274 1.17426 1.22897 0.91187 0.94388 1.25750 0.98172 0.95457 0.97753 1.70049 1.39383 1.43129 1.05694 0.86014 0.80056 0.81055 0.77219 1.19339 1.23378 1.15289 1.22946 1.03984 1.01063 0.91599 1.22993 0.93818 1.02920 1.02422 1.67787 1.07828 1.33148 1.24730 0.88365 0.87189 0.91537 0.80217 0.78283 0.75067 0.94093 0.91945 0.92753 0.87826 0.90033 0.90354 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.94 10.22 71.24 0.73 -1.21 16 2 C 0.19 5.59 6.82 42.59 0.29 5.89 16 3 C -0.30 -6.83 9.85 22.44 0.22 -6.61 16 4 C 0.18 4.73 11.30 84.71 0.96 5.69 16 5 N -0.60 -21.99 9.59 -198.00 -1.90 -23.89 16 6 C 0.55 22.55 8.42 261.49 2.20 24.75 16 7 N -0.68 -29.96 5.44 -351.05 -1.91 -31.87 16 8 C 0.19 7.96 5.55 86.38 0.48 8.44 16 9 C -0.05 -2.08 1.13 -52.93 -0.06 -2.14 16 10 C -0.48 -26.53 8.09 25.60 0.21 -26.32 16 11 H 0.04 2.34 8.06 -2.91 -0.02 2.32 16 12 C 0.03 1.56 5.47 84.65 0.46 2.02 16 13 N -0.94 -59.10 13.96 21.45 0.30 -58.80 16 14 Si 0.93 44.89 25.19 68.60 1.73 46.62 16 15 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 16 H -0.31 -15.21 7.11 99.48 0.71 -14.51 16 17 H -0.23 -10.15 5.23 99.48 0.52 -9.62 16 18 C -0.16 -5.96 9.88 30.59 0.30 -5.66 16 19 C -0.18 -7.15 7.33 30.59 0.22 -6.93 16 20 N -0.61 -23.65 10.40 -186.03 -1.93 -25.58 16 21 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.11 1.39 8.09 -2.39 -0.02 1.37 16 23 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.18 2.45 8.06 -2.91 -0.02 2.42 16 25 H 0.20 3.38 8.06 -2.91 -0.02 3.35 16 26 H 0.41 19.47 7.67 -92.70 -0.71 18.76 16 27 H 0.04 1.85 6.66 -2.39 -0.02 1.83 16 28 H 0.06 2.38 7.95 -2.39 -0.02 2.36 16 29 H 0.26 15.67 8.31 -92.70 -0.77 14.90 16 30 H 0.10 3.29 8.08 -2.38 -0.02 3.27 16 31 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 32 H 0.08 3.22 7.13 -2.39 -0.02 3.20 16 33 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -70.51 278.71 2.51 -68.00 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.21 Total: 27.61 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 6.01 Total: -2.09 kcal Atomic # 7 Polarization: -134.70 SS G_CDS: -5.44 Total: -140.14 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.73 Total: 46.62 kcal Total: -70.51 2.51 -68.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380326352.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.802 kcal (2) G-P(sol) polarization free energy of solvation -70.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds