Wall clock time and date at job start Thu Apr 9 2020 12:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47507 * 2 1 4 4 H 1.09001 * 109.46737 * 305.47518 * 3 2 1 5 5 C 1.50694 * 109.47203 * 185.47799 * 3 2 1 6 6 H 1.08009 * 119.99565 * 269.59646 * 5 3 2 7 7 C 1.37875 * 120.00521 * 89.88159 * 5 3 2 8 8 N 1.31515 * 119.99989 * 173.67867 * 7 5 3 9 9 Si 1.86796 * 119.99485 * 353.67470 * 7 5 3 10 10 H 1.48499 * 109.47078 * 86.04460 * 9 7 5 11 11 H 1.48500 * 109.47100 * 206.03850 * 9 7 5 12 12 H 1.48496 * 109.47730 * 326.04163 * 9 7 5 13 13 N 1.46902 * 109.47040 * 65.47188 * 3 2 1 14 14 C 1.46903 * 111.00036 * 253.77860 * 13 3 2 15 15 C 1.52997 * 109.47049 * 184.42490 * 14 13 3 16 16 C 1.53781 * 113.61112 * 274.13524 * 15 14 13 17 17 C 1.53957 * 87.01769 * 220.05040 * 16 15 14 18 18 F 1.39904 * 113.53254 * 270.81033 * 17 16 15 19 19 F 1.39900 * 113.66623 * 139.93783 * 17 16 15 20 20 C 1.53771 * 87.11385 * 25.36387 * 17 16 15 21 21 H 1.08999 * 109.47469 * 294.43653 * 1 2 3 22 22 H 1.09001 * 109.46722 * 54.43200 * 1 2 3 23 23 H 1.08992 * 109.47459 * 174.42936 * 1 2 3 24 24 H 1.08998 * 109.47450 * 239.99668 * 2 1 3 25 25 H 1.09004 * 109.47392 * 119.99431 * 2 1 3 26 26 H 0.97001 * 119.99089 * 179.97438 * 8 7 5 27 27 H 1.00896 * 110.99820 * 17.72969 * 13 3 2 28 28 H 1.08996 * 109.46806 * 304.41955 * 14 13 3 29 29 H 1.08996 * 109.47037 * 64.42119 * 14 13 3 30 30 H 1.08999 * 112.85460 * 45.32733 * 15 14 13 31 31 H 1.09001 * 113.61722 * 334.56564 * 16 15 14 32 32 H 1.08999 * 113.61820 * 105.46982 * 16 15 14 33 33 H 1.09001 * 113.61532 * 220.09717 * 20 17 16 34 34 H 1.08992 * 113.69373 * 89.19643 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5989 1.9838 -0.8369 5 6 3.5409 1.4446 -0.1356 6 1 4.1629 1.4222 0.7471 7 6 4.1201 1.4811 -1.3863 8 7 5.4238 1.6083 -1.5037 9 14 3.0530 1.3497 -2.9138 10 1 2.5537 2.6977 -3.2863 11 1 3.8559 0.7928 -4.0321 12 1 1.9012 0.4541 -2.6376 13 7 1.6612 2.0959 1.2600 14 6 0.5664 3.0523 1.0487 15 6 0.2747 3.7906 2.3566 16 6 -0.7023 3.0445 3.2805 17 6 -1.3303 4.4155 3.5904 18 9 -0.7337 5.0714 4.6726 19 9 -2.7266 4.3879 3.6729 20 6 -0.8032 4.8793 2.2223 21 1 -0.3634 0.4251 0.9356 22 1 -0.3633 0.5978 -0.8360 23 1 -0.3634 -1.0227 -0.0997 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 5.8312 1.6336 -2.3836 27 1 1.4150 1.4135 1.9613 28 1 0.8551 3.7714 0.2822 29 1 -0.3267 2.5168 0.7267 30 1 1.1788 4.1312 2.8612 31 1 -1.3725 2.3669 2.7514 32 1 -0.2210 2.5791 4.1406 33 1 -0.4029 5.8931 2.2294 34 1 -1.4999 4.7050 1.4025 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383597245.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:14 Heat of formation + Delta-G solvation = -89.763493 kcal Electronic energy + Delta-G solvation = -16822.484437 eV Core-core repulsion = 13812.334653 eV Total energy + Delta-G solvation = -3010.149784 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.129 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.82555 -47.16985 -38.49480 -36.23681 -32.30395 -31.30103 -28.05443 -26.35700 -25.56869 -22.79254 -21.85264 -20.12021 -19.55055 -17.47246 -16.84110 -16.51127 -16.24278 -15.56595 -14.71519 -14.18836 -14.08429 -14.02083 -13.49745 -13.31392 -13.01873 -12.69453 -12.59699 -12.42089 -11.94141 -11.77777 -11.35809 -11.07140 -10.96322 -10.80844 -10.49292 -10.40858 -10.32196 -9.99444 -9.62346 -9.20911 -8.54030 -7.35311 -6.04775 -4.00469 3.25414 3.34836 3.35342 3.46048 3.75988 4.24904 4.34298 4.41192 4.43353 5.04485 5.29838 5.36092 5.43407 5.52266 5.55423 5.62715 5.68811 5.76934 5.79739 5.93664 5.95955 6.17472 6.34852 6.44103 6.49849 6.70828 6.82626 7.11766 7.73998 7.91090 8.33438 8.70035 9.07941 9.58796 11.09008 Molecular weight = 233.13amu Principal moments of inertia in cm(-1) A = 0.038261 B = 0.005979 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.646495 B = 4681.955948 C = 4915.001810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.149 4.149 3 C 0.189 3.811 4 H 0.026 0.974 5 C -0.490 4.490 6 H 0.078 0.922 7 C 0.068 3.932 8 N -0.900 5.900 9 Si 0.866 3.134 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.261 1.261 13 N -0.671 5.671 14 C 0.070 3.930 15 C -0.097 4.097 16 C -0.163 4.163 17 C 0.250 3.750 18 F -0.182 7.182 19 F -0.197 7.197 20 C -0.161 4.161 21 H 0.044 0.956 22 H 0.044 0.956 23 H 0.042 0.958 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.262 0.738 27 H 0.324 0.676 28 H 0.073 0.927 29 H 0.024 0.976 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.124 2.991 6.432 15.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.188 4.188 3 C 0.081 3.919 4 H 0.044 0.956 5 C -0.529 4.529 6 H 0.096 0.904 7 C -0.133 4.133 8 N -0.538 5.538 9 Si 0.694 3.306 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.186 1.186 13 N -0.301 5.301 14 C -0.060 4.060 15 C -0.116 4.116 16 C -0.201 4.201 17 C 0.214 3.786 18 F -0.163 7.163 19 F -0.178 7.178 20 C -0.199 4.199 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.141 0.859 28 H 0.091 0.909 29 H 0.042 0.958 30 H 0.131 0.869 31 H 0.125 0.875 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.490 3.500 6.274 15.284 hybrid contribution -1.366 -0.560 -0.902 1.730 sum -14.856 2.940 5.372 16.069 Atomic orbital electron populations 1.21951 0.98616 1.00301 1.00386 1.22506 0.92570 1.01694 1.02067 1.19611 0.96700 0.88410 0.87165 0.95567 1.20965 0.88999 1.49022 0.93902 0.90425 1.24973 0.94775 0.94966 0.98604 1.69910 1.09753 1.50477 1.23698 0.87077 0.81224 0.78765 0.83529 1.20494 1.21506 1.18618 1.60758 1.37201 1.20774 1.11362 1.21941 0.93336 0.95859 0.94879 1.22493 0.96815 0.94734 0.97549 1.24241 0.99052 0.94884 1.01893 1.22274 0.73929 0.96417 0.86014 1.93006 1.82847 1.82692 1.57713 1.92986 1.30807 1.97103 1.96888 1.24127 0.99362 1.01940 0.94519 0.93722 0.93700 0.93882 0.91893 0.92411 0.92762 0.85901 0.90870 0.95810 0.86930 0.87459 0.88860 0.88911 0.87266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 8.93 37.15 0.33 -2.15 16 2 C -0.15 -2.94 4.86 -26.73 -0.13 -3.07 16 3 C 0.19 4.19 1.76 -68.86 -0.12 4.07 16 4 H 0.03 0.60 5.44 -51.93 -0.28 0.32 16 5 C -0.49 -13.44 9.19 -34.44 -0.32 -13.76 16 6 H 0.08 2.37 8.06 -52.48 -0.42 1.94 16 7 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 8 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 9 Si 0.87 20.90 26.24 -169.99 -4.46 16.43 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.26 -5.91 5.82 56.52 0.33 -5.58 16 13 N -0.67 -12.68 6.05 -107.95 -0.65 -13.33 16 14 C 0.07 1.08 4.98 -3.82 -0.02 1.06 16 15 C -0.10 -1.23 3.91 -89.81 -0.35 -1.58 16 16 C -0.16 -1.82 7.43 -25.83 -0.19 -2.01 16 17 C 0.25 2.99 3.28 -25.83 -0.08 2.90 16 18 F -0.18 -2.42 17.38 2.25 0.04 -2.38 16 19 F -0.20 -2.53 17.41 2.25 0.04 -2.49 16 20 C -0.16 -1.76 7.43 -25.92 -0.19 -1.95 16 21 H 0.04 0.63 6.72 -51.93 -0.35 0.28 16 22 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.06 1.34 6.30 -51.93 -0.33 1.01 16 25 H 0.06 1.11 8.05 -51.93 -0.42 0.69 16 26 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.32 5.56 7.80 -39.29 -0.31 5.25 16 28 H 0.07 1.22 8.02 -51.93 -0.42 0.80 16 29 H 0.02 0.34 6.34 -51.93 -0.33 0.01 16 30 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.11 1.10 7.92 -51.93 -0.41 0.69 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.11 1.07 8.10 -51.93 -0.42 0.65 16 LS Contribution 280.08 15.07 4.22 4.22 Total: -1.00 -29.46 280.08 -6.22 -35.67 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -5.00 Total: 3.05 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -1.17 Total: -14.65 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.12 Total: -39.86 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.08 Total: -4.87 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.46 Total: 16.43 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.46 -6.22 -35.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383597245.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.090 kcal (2) G-P(sol) polarization free energy of solvation -29.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds