Wall clock time and date at job start Thu Apr 9 2020 12:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46718 * 2 1 4 4 H 1.08995 * 109.47126 * 305.56590 * 3 2 1 5 5 C 1.50707 * 109.46694 * 185.56833 * 3 2 1 6 6 H 1.08003 * 119.99992 * 242.71497 * 5 3 2 7 7 C 1.37874 * 120.00099 * 62.71171 * 5 3 2 8 8 N 1.31512 * 120.00139 * 194.36608 * 7 5 3 9 9 Si 1.86798 * 119.99804 * 14.36975 * 7 5 3 10 10 H 1.48497 * 109.47440 * 92.56511 * 9 7 5 11 11 H 1.48501 * 109.47090 * 212.56698 * 9 7 5 12 12 H 1.48505 * 109.47457 * 332.56416 * 9 7 5 13 13 N 1.46905 * 109.47443 * 65.57207 * 3 2 1 14 14 C 1.46898 * 110.99601 * 253.13363 * 13 3 2 15 15 H 1.09000 * 110.01559 * 34.03768 * 14 13 3 16 16 C 1.53878 * 110.03059 * 155.42797 * 14 13 3 17 17 C 1.54265 * 106.59787 * 119.28587 * 16 14 13 18 18 C 1.54883 * 104.19861 * 23.60829 * 17 16 14 19 19 F 1.39906 * 110.75514 * 80.36811 * 18 17 16 20 20 F 1.39897 * 110.75792 * 203.55857 * 18 17 16 21 21 C 1.54263 * 110.03301 * 272.59349 * 14 13 3 22 22 H 1.08998 * 109.47180 * 178.92973 * 1 2 3 23 23 H 1.09000 * 109.47778 * 298.93291 * 1 2 3 24 24 H 1.09009 * 109.47201 * 58.93634 * 1 2 3 25 25 H 1.09000 * 109.47038 * 239.99804 * 2 1 3 26 26 H 1.09001 * 109.46841 * 119.99863 * 2 1 3 27 27 H 0.97006 * 119.99924 * 180.02562 * 8 7 5 28 28 H 1.00898 * 110.99940 * 17.08480 * 13 3 2 29 29 H 1.09003 * 110.03088 * 238.56945 * 16 14 13 30 30 H 1.09004 * 110.03007 * 359.94848 * 16 14 13 31 31 H 1.09001 * 110.48266 * 142.29248 * 17 16 14 32 32 H 1.09004 * 110.48056 * 264.79724 * 17 16 14 33 33 H 1.08999 * 110.48436 * 335.78599 * 21 14 13 34 34 H 1.09001 * 110.48829 * 98.43138 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5975 1.9843 -0.8359 5 6 3.5407 1.4447 -0.1379 6 1 4.1551 1.8472 0.6539 7 6 4.1293 0.9330 -1.2748 8 7 5.4182 0.6720 -1.2875 9 14 3.0959 0.6103 -2.7971 10 1 3.1315 1.8027 -3.6814 11 1 3.6413 -0.5630 -3.5260 12 1 1.6934 0.3345 -2.3942 13 7 1.6631 2.0952 1.2610 14 6 0.5782 3.0627 1.0493 15 1 -0.0912 2.7071 0.2660 16 6 -0.2049 3.2711 2.3574 17 6 -0.0682 4.7644 2.7196 18 6 0.2360 5.4569 1.3681 19 9 -0.9393 5.6489 0.6338 20 9 0.8955 6.6737 1.5718 21 6 1.1634 4.4365 0.6623 22 1 -0.3633 -1.0275 -0.0192 23 1 -0.3635 0.4971 0.8994 24 1 -0.3634 0.5303 -0.8804 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 5.8323 0.3123 -2.0875 28 1 1.4080 1.4128 1.9592 29 1 -1.2545 3.0175 2.2087 30 1 0.2196 2.6536 3.1491 31 1 -1.0003 5.1416 3.1404 32 1 0.7534 4.9132 3.4203 33 1 2.1854 4.5328 1.0289 34 1 1.1301 4.5747 -0.4184 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389225006.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:18 Heat of formation + Delta-G solvation = -129.100056 kcal Electronic energy + Delta-G solvation = -17328.265855 eV Core-core repulsion = 14316.410310 eV Total energy + Delta-G solvation = -3011.855545 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.129 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.83663 -48.01068 -39.50533 -36.81525 -34.19797 -32.15753 -29.75169 -29.44526 -26.88725 -24.19478 -22.30225 -21.57811 -21.36818 -18.79906 -18.52016 -17.74017 -17.05678 -16.67299 -16.16710 -15.68066 -15.51937 -15.00724 -14.89172 -14.63316 -14.35390 -14.07576 -13.71683 -13.51646 -13.26320 -13.05928 -12.65507 -12.58549 -12.40238 -12.32477 -11.89999 -11.82128 -11.61648 -11.56160 -11.23414 -11.14210 -10.53293 -8.99748 -8.25103 -6.21141 1.32274 1.37598 1.44601 2.36529 2.73417 2.94859 3.08083 3.31470 3.38133 3.75529 4.13297 4.24081 4.33247 4.33969 4.39131 4.42355 4.51044 4.61401 4.77671 4.83238 4.89885 5.05447 5.10264 5.14804 5.16660 5.20225 5.31712 5.54632 5.77219 6.10201 6.71566 6.85785 6.87838 7.42016 8.92332 Molecular weight = 233.13amu Principal moments of inertia in cm(-1) A = 0.029822 B = 0.007901 C = 0.007276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.684018 B = 3542.946770 C = 3847.272385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.150 4.150 3 C 0.198 3.802 4 H 0.016 0.984 5 C -0.499 4.499 6 H 0.033 0.967 7 C 0.012 3.988 8 N -0.948 5.948 9 Si 0.920 3.080 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.220 1.220 13 N -0.674 5.674 14 C 0.085 3.915 15 H 0.051 0.949 16 C -0.117 4.117 17 C -0.141 4.141 18 C 0.270 3.730 19 F -0.202 7.202 20 F -0.209 7.209 21 C -0.150 4.150 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.262 0.738 28 H 0.343 0.657 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.697 4.309 6.516 17.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.189 4.189 3 C 0.088 3.912 4 H 0.034 0.966 5 C -0.538 4.538 6 H 0.052 0.948 7 C -0.185 4.185 8 N -0.589 5.589 9 Si 0.745 3.255 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.143 1.143 13 N -0.306 5.306 14 C -0.026 4.026 15 H 0.069 0.931 16 C -0.154 4.154 17 C -0.179 4.179 18 C 0.234 3.766 19 F -0.183 7.183 20 F -0.190 7.190 21 C -0.189 4.189 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.163 0.837 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.128 0.872 32 H 0.124 0.876 33 H 0.112 0.888 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.090 4.736 6.375 17.052 hybrid contribution -0.146 -0.476 -1.382 1.469 sum -15.236 4.260 4.993 16.589 Atomic orbital electron populations 1.21839 0.94899 1.02043 1.01601 1.22477 0.95897 0.99224 1.01314 1.19396 0.93262 0.90172 0.88349 0.96605 1.21331 0.91914 1.37864 1.02687 0.94827 1.25741 0.95761 0.95138 1.01853 1.70117 1.13103 1.46149 1.29502 0.86341 0.82093 0.77385 0.79726 1.21143 1.21596 1.14289 1.60486 1.39310 1.20476 1.10307 1.22084 0.91062 0.91604 0.97806 0.93103 1.22343 1.01251 0.95343 0.96491 1.23229 1.05792 0.95637 0.93246 1.22302 0.79320 0.80561 0.94458 1.92964 1.49860 1.95819 1.79706 1.92957 1.81389 1.48927 1.95688 1.23360 1.00231 0.94466 1.00892 0.91783 0.91539 0.93696 0.93697 0.92350 0.92915 0.83662 0.88874 0.88428 0.87237 0.87575 0.88843 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.21 9.03 71.98 0.65 -3.56 16 2 C -0.15 -5.74 4.43 30.59 0.14 -5.60 16 3 C 0.20 8.55 1.60 44.17 0.07 8.62 16 4 H 0.02 0.72 6.24 -2.39 -0.01 0.70 16 5 C -0.50 -27.91 9.31 25.60 0.24 -27.67 16 6 H 0.03 2.14 8.06 -2.91 -0.02 2.11 16 7 C 0.01 0.68 5.34 84.65 0.45 1.13 16 8 N -0.95 -59.39 13.96 21.45 0.30 -59.09 16 9 Si 0.92 43.15 25.74 68.60 1.77 44.92 16 10 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 11 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 12 H -0.22 -9.12 5.34 99.48 0.53 -8.59 16 13 N -0.67 -24.06 5.82 -469.59 -2.73 -26.79 16 14 C 0.08 2.47 2.36 45.64 0.11 2.58 16 15 H 0.05 1.50 6.90 -2.39 -0.02 1.49 16 16 C -0.12 -2.36 6.48 31.32 0.20 -2.16 16 17 C -0.14 -2.82 6.43 31.67 0.20 -2.61 16 18 C 0.27 7.34 2.50 31.88 0.08 7.42 16 19 F -0.20 -5.73 17.21 44.97 0.77 -4.95 16 20 F -0.21 -6.26 17.22 44.97 0.77 -5.49 16 21 C -0.15 -4.80 6.09 31.67 0.19 -4.61 16 22 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.07 1.62 6.87 -2.39 -0.02 1.61 16 24 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 25 H 0.04 1.87 4.59 -2.39 -0.01 1.86 16 26 H 0.06 2.22 8.05 -2.39 -0.02 2.20 16 27 H 0.26 15.47 8.31 -92.70 -0.77 14.69 16 28 H 0.34 10.74 7.01 -89.70 -0.63 10.11 16 29 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.10 1.78 7.48 -2.38 -0.02 1.76 16 31 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.09 3.36 8.05 -2.39 -0.02 3.34 16 34 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -65.34 273.47 3.50 -61.84 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.29 Total: 16.03 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: 2.33 Total: -26.45 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -2.44 Total: -85.89 kcal Atomic # 9 Polarization: -11.99 SS G_CDS: 1.55 Total: -10.44 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.77 Total: 44.92 kcal Total: -65.34 3.50 -61.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389225006.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.264 kcal (2) G-P(sol) polarization free energy of solvation -65.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds