Wall clock time and date at job start Thu Apr 9 2020 12:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00007 * 2 1 4 4 H 1.48503 * 109.46966 * 240.00018 * 3 2 1 5 5 H 1.48501 * 109.47379 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47406 * 119.99808 * 3 2 1 7 7 C 1.37878 * 119.99559 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99711 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00160 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.46999 * 180.02562 * 9 7 2 11 11 C 1.46896 * 111.00046 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47098 * 179.97438 * 11 10 9 13 13 H 1.08992 * 109.47514 * 305.00509 * 12 11 10 14 14 C 1.53000 * 109.46886 * 185.00074 * 12 11 10 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47317 * 59.99960 * 15 14 12 17 17 C 1.53005 * 109.47159 * 300.00546 * 16 15 14 18 18 C 1.52997 * 109.47452 * 59.99536 * 17 16 15 19 19 F 1.39897 * 109.47422 * 180.02562 * 18 17 16 20 20 F 1.39905 * 109.46801 * 59.99777 * 18 17 16 21 21 H 0.96997 * 119.99572 * 0.02562 * 1 2 3 22 22 H 1.08991 * 109.46922 * 60.00279 * 9 7 2 23 23 H 1.09001 * 109.47223 * 299.99827 * 9 7 2 24 24 H 1.00905 * 110.99954 * 303.95441 * 10 9 7 25 25 H 1.09008 * 109.46954 * 60.00087 * 11 10 9 26 26 H 1.09000 * 109.47139 * 300.00330 * 11 10 9 27 27 H 1.09002 * 109.47398 * 300.00496 * 14 12 11 28 28 H 1.09001 * 109.47194 * 60.00677 * 14 12 11 29 29 H 1.08996 * 109.47853 * 180.02562 * 15 14 12 30 30 H 1.09002 * 109.47153 * 300.00319 * 15 14 12 31 31 H 1.09000 * 109.47486 * 180.02562 * 16 15 14 32 32 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 33 33 H 1.09002 * 109.46935 * 299.99411 * 17 16 15 34 34 H 1.09001 * 109.46812 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2055 -3.6158 0.0027 11 6 1.5052 -4.9071 0.0045 12 6 2.5301 -6.0431 0.0048 13 1 3.2106 -5.9188 -0.8375 14 6 1.8046 -7.3844 -0.1191 15 6 2.8294 -8.5205 -0.1181 16 6 3.6242 -8.4893 1.1889 17 6 4.3496 -7.1479 1.3129 18 6 3.3248 -6.0118 1.3119 19 9 3.9881 -4.7853 1.4247 20 9 2.4509 -6.1712 2.3928 21 1 -0.4849 0.8401 -0.0004 22 1 0.6240 -2.5575 -0.8880 23 1 0.6246 -2.5563 0.8920 24 1 2.8404 -3.5494 -0.7788 25 1 0.8800 -4.9825 -0.8853 26 1 0.8806 -4.9804 0.8947 27 1 1.1241 -7.5087 0.7233 28 1 1.2382 -7.4065 -1.0501 29 1 2.3128 -9.4761 -0.2068 30 1 3.5103 -8.3964 -0.9603 31 1 4.3546 -9.2984 1.1895 32 1 2.9434 -8.6134 2.0311 33 1 5.0304 -7.0238 0.4707 34 1 4.9154 -7.1256 2.2443 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390978673.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:32 Heat of formation + Delta-G solvation = -123.974104 kcal Electronic energy + Delta-G solvation = -17194.860027 eV Core-core repulsion = 14183.226760 eV Total energy + Delta-G solvation = -3011.633267 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.129 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.39307 -46.31244 -37.97082 -35.23615 -32.69638 -31.06067 -29.85212 -26.77839 -24.14515 -22.73936 -21.57179 -20.96127 -19.86834 -16.92617 -16.51569 -16.24367 -16.04231 -14.84744 -14.47955 -14.26443 -13.87925 -13.80128 -13.22216 -13.10225 -12.74844 -12.64493 -12.34432 -12.01744 -11.90295 -11.53804 -11.49264 -11.18230 -10.92758 -10.84962 -10.69542 -10.65165 -10.45725 -9.92794 -9.72799 -9.12272 -8.41796 -7.19278 -5.97507 -3.98828 3.37938 3.41187 3.45170 4.06889 4.30308 4.42524 4.49610 4.55318 4.85040 4.97264 5.10878 5.23787 5.27156 5.38097 5.38630 5.61104 5.66554 5.79955 5.84180 5.86740 5.91991 6.00043 6.09276 6.16402 6.21316 6.47650 7.29664 7.47027 7.84295 8.18242 8.46019 8.67206 9.10312 9.65579 11.13809 Molecular weight = 233.13amu Principal moments of inertia in cm(-1) A = 0.049202 B = 0.005838 C = 0.005549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.940461 B = 4795.099847 C = 5044.503473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.511 4.511 8 H 0.062 0.938 9 C 0.195 3.805 10 N -0.682 5.682 11 C 0.060 3.940 12 C -0.124 4.124 13 H 0.092 0.908 14 C -0.115 4.115 15 C -0.122 4.122 16 C -0.118 4.118 17 C -0.161 4.161 18 C 0.304 3.696 19 F -0.177 7.177 20 F -0.204 7.204 21 H 0.261 0.739 22 H -0.015 1.015 23 H 0.027 0.973 24 H 0.327 0.673 25 H 0.027 0.973 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.315 -17.746 -0.283 18.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.550 4.550 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.312 5.312 11 C -0.071 4.071 12 C -0.144 4.144 13 H 0.111 0.889 14 C -0.153 4.153 15 C -0.159 4.159 16 C -0.156 4.156 17 C -0.199 4.199 18 C 0.267 3.733 19 F -0.158 7.158 20 F -0.185 7.185 21 H 0.071 0.929 22 H 0.003 0.997 23 H 0.045 0.955 24 H 0.144 0.856 25 H 0.045 0.955 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.223 -17.563 0.443 18.639 hybrid contribution 0.015 1.066 -0.781 1.322 sum 6.239 -16.497 -0.338 17.641 Atomic orbital electron populations 1.69961 1.06085 1.26807 1.51116 1.24992 0.94875 0.99343 0.95430 0.86531 0.79394 0.82645 0.78641 1.20309 1.21385 1.20143 1.21159 0.93531 0.90213 1.50066 0.91962 1.19532 0.90544 0.87403 0.95626 1.60696 1.20849 1.00818 1.48839 1.21923 0.94624 0.89828 1.00700 1.22214 0.98986 0.96902 0.96296 0.88948 1.21559 0.98080 0.92518 1.03184 1.21594 0.98058 0.98689 0.97598 1.21508 0.99457 0.95878 0.98757 1.22571 0.98131 0.94498 1.04741 1.20737 0.85350 0.82036 0.85154 1.93109 1.80749 1.45512 1.96412 1.92942 1.71395 1.95697 1.58452 0.92931 0.99744 0.95497 0.85643 0.95519 0.91086 0.90922 0.90799 0.91382 0.91639 0.91037 0.91019 0.89175 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.65 13.29 55.43 0.74 -26.91 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 22.34 29.54 -169.99 -5.02 17.31 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.51 -15.05 9.32 -34.44 -0.32 -15.37 16 8 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 9 C 0.20 5.35 5.44 -4.97 -0.03 5.33 16 10 N -0.68 -15.33 4.82 -115.06 -0.56 -15.89 16 11 C 0.06 1.10 5.01 -3.83 -0.02 1.08 16 12 C -0.12 -1.78 2.06 -90.62 -0.19 -1.96 16 13 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 14 C -0.12 -1.29 5.08 -26.73 -0.14 -1.43 16 15 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 16 C -0.12 -1.09 5.80 -26.73 -0.16 -1.24 16 17 C -0.16 -1.80 5.45 -26.73 -0.15 -1.95 16 18 C 0.30 4.66 1.63 -26.73 -0.04 4.62 16 19 F -0.18 -3.40 15.36 2.25 0.03 -3.37 16 20 F -0.20 -3.50 15.42 2.25 0.03 -3.46 16 21 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 22 H -0.02 -0.43 8.14 -51.93 -0.42 -0.86 16 23 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.33 6.98 8.72 -39.29 -0.34 6.64 16 25 H 0.03 0.48 8.14 -51.92 -0.42 0.05 16 26 H 0.07 1.40 7.66 -51.93 -0.40 1.00 16 27 H 0.07 0.86 7.80 -51.93 -0.41 0.45 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.70 7.80 -51.93 -0.41 0.30 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 280.46 15.07 4.23 4.23 Total: -1.00 -31.94 280.46 -7.16 -39.10 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -5.32 Total: -0.36 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -1.29 Total: -10.65 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 0.18 Total: -42.80 kcal Atomic # 9 Polarization: -6.90 SS G_CDS: 0.07 Total: -6.83 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.94 -7.16 -39.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390978673.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.874 kcal (2) G-P(sol) polarization free energy of solvation -31.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds