Wall clock time and date at job start Thu Apr 9 2020 12:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00007 * 2 1 4 4 H 1.48503 * 109.46966 * 240.00018 * 3 2 1 5 5 H 1.48501 * 109.47379 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47406 * 119.99808 * 3 2 1 7 7 C 1.37878 * 119.99559 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99711 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00160 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.46999 * 180.02562 * 9 7 2 11 11 C 1.46896 * 111.00046 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47098 * 179.97438 * 11 10 9 13 13 H 1.08992 * 109.47514 * 305.00509 * 12 11 10 14 14 C 1.53000 * 109.46886 * 185.00074 * 12 11 10 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47317 * 59.99960 * 15 14 12 17 17 C 1.53005 * 109.47159 * 300.00546 * 16 15 14 18 18 C 1.52997 * 109.47452 * 59.99536 * 17 16 15 19 19 F 1.39897 * 109.47422 * 180.02562 * 18 17 16 20 20 F 1.39905 * 109.46801 * 59.99777 * 18 17 16 21 21 H 0.96997 * 119.99572 * 0.02562 * 1 2 3 22 22 H 1.08991 * 109.46922 * 60.00279 * 9 7 2 23 23 H 1.09001 * 109.47223 * 299.99827 * 9 7 2 24 24 H 1.00905 * 110.99954 * 303.95441 * 10 9 7 25 25 H 1.09008 * 109.46954 * 60.00087 * 11 10 9 26 26 H 1.09000 * 109.47139 * 300.00330 * 11 10 9 27 27 H 1.09002 * 109.47398 * 300.00496 * 14 12 11 28 28 H 1.09001 * 109.47194 * 60.00677 * 14 12 11 29 29 H 1.08996 * 109.47853 * 180.02562 * 15 14 12 30 30 H 1.09002 * 109.47153 * 300.00319 * 15 14 12 31 31 H 1.09000 * 109.47486 * 180.02562 * 16 15 14 32 32 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 33 33 H 1.09002 * 109.46935 * 299.99411 * 17 16 15 34 34 H 1.09001 * 109.46812 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2055 -3.6158 0.0027 11 6 1.5052 -4.9071 0.0045 12 6 2.5301 -6.0431 0.0048 13 1 3.2106 -5.9188 -0.8375 14 6 1.8046 -7.3844 -0.1191 15 6 2.8294 -8.5205 -0.1181 16 6 3.6242 -8.4893 1.1889 17 6 4.3496 -7.1479 1.3129 18 6 3.3248 -6.0118 1.3119 19 9 3.9881 -4.7853 1.4247 20 9 2.4509 -6.1712 2.3928 21 1 -0.4849 0.8401 -0.0004 22 1 0.6240 -2.5575 -0.8880 23 1 0.6246 -2.5563 0.8920 24 1 2.8404 -3.5494 -0.7788 25 1 0.8800 -4.9825 -0.8853 26 1 0.8806 -4.9804 0.8947 27 1 1.1241 -7.5087 0.7233 28 1 1.2382 -7.4065 -1.0501 29 1 2.3128 -9.4761 -0.2068 30 1 3.5103 -8.3964 -0.9603 31 1 4.3546 -9.2984 1.1895 32 1 2.9434 -8.6134 2.0311 33 1 5.0304 -7.0238 0.4707 34 1 4.9154 -7.1256 2.2443 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390978673.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:32 Heat of formation + Delta-G solvation = -144.328135 kcal Electronic energy + Delta-G solvation = -17195.742644 eV Core-core repulsion = 14183.226760 eV Total energy + Delta-G solvation = -3012.515884 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.129 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.69716 -47.66470 -39.02722 -36.91550 -34.71326 -32.44792 -30.88033 -28.68677 -25.72792 -23.79644 -23.40707 -22.28990 -20.86795 -18.64846 -18.07075 -17.63166 -17.27558 -16.71263 -15.95425 -15.63837 -15.31682 -14.84376 -14.56054 -14.53513 -14.20144 -14.01600 -13.79252 -13.55366 -13.27548 -13.09392 -12.74960 -12.68836 -12.54428 -12.37578 -12.08866 -11.97001 -11.55058 -11.53328 -11.25920 -10.87970 -10.66478 -9.09008 -8.24045 -6.35595 1.39422 1.44091 1.52080 2.39146 2.98673 3.08854 3.19762 3.39311 3.48708 3.70975 4.04825 4.13687 4.22189 4.32372 4.35580 4.50042 4.56860 4.65533 4.80501 4.83289 5.02766 5.06761 5.11819 5.13158 5.21531 5.23323 5.28712 5.48127 5.59159 5.99450 6.41697 6.69961 6.87220 7.35250 8.87705 Molecular weight = 233.13amu Principal moments of inertia in cm(-1) A = 0.049202 B = 0.005838 C = 0.005549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.940461 B = 4795.099847 C = 5044.503473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.063 0.937 9 C 0.211 3.789 10 N -0.682 5.682 11 C 0.058 3.942 12 C -0.116 4.116 13 H 0.109 0.891 14 C -0.112 4.112 15 C -0.116 4.116 16 C -0.116 4.116 17 C -0.153 4.153 18 C 0.284 3.716 19 F -0.205 7.205 20 F -0.220 7.220 21 H 0.266 0.734 22 H -0.037 1.037 23 H -0.008 1.008 24 H 0.336 0.664 25 H 0.034 0.966 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.108 0.892 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.937 -18.847 -1.107 20.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.196 1.196 7 C -0.574 4.574 8 H 0.081 0.919 9 C 0.083 3.917 10 N -0.313 5.313 11 C -0.072 4.072 12 C -0.135 4.135 13 H 0.127 0.873 14 C -0.150 4.150 15 C -0.154 4.154 16 C -0.154 4.154 17 C -0.191 4.191 18 C 0.248 3.752 19 F -0.186 7.186 20 F -0.201 7.201 21 H 0.074 0.926 22 H -0.019 1.019 23 H 0.010 0.990 24 H 0.153 0.847 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.080 0.920 33 H 0.126 0.874 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.856 -18.696 -0.386 20.283 hybrid contribution -0.546 1.372 -0.505 1.561 sum 7.310 -17.324 -0.891 18.824 Atomic orbital electron populations 1.70094 1.07865 1.28125 1.51476 1.25996 0.95834 1.03506 0.94455 0.85337 0.78083 0.77391 0.79182 1.18789 1.20538 1.19576 1.21503 0.93761 0.91426 1.50755 0.91868 1.19165 0.90587 0.89111 0.92854 1.60544 1.20193 1.01222 1.49349 1.21984 0.95789 0.89480 0.99918 1.22209 0.98109 0.96735 0.96441 0.87314 1.21584 0.98562 0.91565 1.03335 1.21599 0.97604 0.98280 0.97881 1.21552 0.99842 0.95317 0.98640 1.22589 0.97180 0.93586 1.05753 1.21447 0.86410 0.82385 0.84940 1.93046 1.81308 1.47735 1.96545 1.92905 1.72150 1.95723 1.59338 0.92557 1.01940 0.99034 0.84713 0.94817 0.93245 0.92042 0.89626 0.89306 0.90127 0.88181 0.92016 0.87388 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.50 13.29 21.45 0.28 -58.21 16 2 C 0.00 0.01 5.46 84.65 0.46 0.47 16 3 Si 0.98 45.82 29.54 68.60 2.03 47.84 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.54 -32.20 9.32 25.60 0.24 -31.96 16 8 H 0.06 3.70 7.81 -2.91 -0.02 3.67 16 9 C 0.21 12.02 5.44 85.56 0.47 12.49 16 10 N -0.68 -31.51 4.82 -517.93 -2.50 -34.01 16 11 C 0.06 2.18 5.01 86.30 0.43 2.61 16 12 C -0.12 -3.18 2.06 -10.79 -0.02 -3.20 16 13 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 14 C -0.11 -2.29 5.08 30.59 0.16 -2.14 16 15 C -0.12 -1.63 5.92 30.59 0.18 -1.45 16 16 C -0.12 -1.76 5.80 30.60 0.18 -1.58 16 17 C -0.15 -3.07 5.45 30.60 0.17 -2.91 16 18 C 0.28 8.58 1.63 30.59 0.05 8.63 16 19 F -0.21 -7.94 15.36 44.97 0.69 -7.25 16 20 F -0.22 -7.67 15.42 44.97 0.69 -6.98 16 21 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 22 H -0.04 -2.22 8.14 -2.39 -0.02 -2.24 16 23 H -0.01 -0.54 8.14 -2.39 -0.02 -0.55 16 24 H 0.34 14.46 8.72 -89.69 -0.78 13.68 16 25 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 26 H 0.05 2.05 7.66 -2.39 -0.02 2.03 16 27 H 0.06 1.40 7.80 -2.39 -0.02 1.38 16 28 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.08 7.80 -2.39 -0.02 1.06 16 33 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -70.72 280.46 3.80 -66.92 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 0.30 Total: 10.73 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: 2.31 Total: -19.04 kcal Atomic # 7 Polarization: -90.01 SS G_CDS: -2.21 Total: -92.22 kcal Atomic # 9 Polarization: -15.62 SS G_CDS: 1.38 Total: -14.23 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -70.72 3.80 -66.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390978673.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.412 kcal (2) G-P(sol) polarization free energy of solvation -70.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds