Wall clock time and date at job start Thu Apr 9 2020 12:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46939 * 2 1 4 4 N 1.46497 * 109.46872 * 182.45947 * 3 2 1 5 5 C 1.36939 * 120.00020 * 263.07497 * 4 3 2 6 6 H 1.08002 * 119.99705 * 193.02393 * 5 4 3 7 7 C 1.38810 * 120.00358 * 13.01727 * 5 4 3 8 8 N 1.31623 * 119.99372 * 14.57421 * 7 5 4 9 9 Si 1.86796 * 120.00303 * 194.57144 * 7 5 4 10 10 H 1.48496 * 109.47033 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46841 * 120.00068 * 9 7 5 12 12 H 1.48497 * 109.47404 * 239.99939 * 9 7 5 13 13 C 1.46507 * 120.00147 * 83.07093 * 4 3 2 14 14 C 1.52997 * 109.47041 * 94.00604 * 13 4 3 15 15 C 1.53777 * 113.61602 * 184.53711 * 14 13 4 16 16 C 1.53779 * 87.17472 * 220.06012 * 15 14 13 17 17 F 1.39898 * 113.61080 * 139.93572 * 16 15 14 18 18 F 1.39890 * 113.61803 * 270.84222 * 16 15 14 19 19 C 1.53784 * 87.07968 * 25.39295 * 16 15 14 20 20 H 1.08996 * 109.47076 * 299.99971 * 1 2 3 21 21 H 1.08999 * 109.47183 * 59.99889 * 1 2 3 22 22 H 1.08995 * 109.46814 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46929 * 240.00038 * 2 1 3 24 24 H 1.08994 * 109.47301 * 120.00588 * 2 1 3 25 25 H 1.08993 * 109.46688 * 62.46433 * 3 2 1 26 26 H 1.09001 * 109.47148 * 302.45710 * 3 2 1 27 27 H 0.97000 * 119.99605 * 179.97438 * 8 7 5 28 28 H 1.08995 * 109.46637 * 334.00787 * 13 4 3 29 29 H 1.09001 * 109.47189 * 214.00999 * 13 4 3 30 30 H 1.09000 * 112.90744 * 315.79142 * 14 13 4 31 31 H 1.08998 * 113.61459 * 105.46761 * 15 14 13 32 32 H 1.08994 * 113.61426 * 334.65707 * 15 14 13 33 33 H 1.09002 * 113.61653 * 89.11632 * 19 16 15 34 34 H 1.09001 * 113.61413 * 219.93435 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5038 1.4429 -0.0593 5 6 4.2356 1.5693 1.0913 6 1 5.2935 1.7804 1.0379 7 6 3.6179 1.4261 2.3261 8 7 2.4166 0.8936 2.4030 9 14 4.4914 1.9889 3.8783 10 1 5.8201 2.5489 3.5232 11 1 3.6787 3.0331 4.5527 12 1 4.6694 0.8327 4.7931 13 6 4.1848 1.3081 -1.3494 14 6 4.5044 2.6973 -1.9050 15 6 5.1234 2.6705 -3.3125 16 6 6.0575 3.7971 -2.8404 17 9 7.3721 3.6646 -3.3001 18 9 5.5362 5.0793 -3.0433 19 6 5.8478 3.2657 -1.4126 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 1.7132 1.9433 0.9112 26 1 1.6412 1.9689 -0.8671 27 1 1.9851 0.7932 3.2659 28 1 3.5378 0.7775 -2.0479 29 1 5.1105 0.7486 -1.2150 30 1 3.6729 3.3952 -1.8069 31 1 4.4333 2.9762 -4.0988 32 1 5.6428 1.7405 -3.5434 33 1 6.5653 2.4980 -1.1226 34 1 5.7440 4.0520 -0.6649 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394758601.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:35 Heat of formation + Delta-G solvation = -75.688478 kcal Electronic energy + Delta-G solvation = -17126.825947 eV Core-core repulsion = 14117.286501 eV Total energy + Delta-G solvation = -3009.539446 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.129 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.77215 -48.12123 -39.40288 -37.33094 -33.64521 -32.93182 -28.57027 -27.41164 -26.94896 -24.58888 -22.86912 -21.64341 -20.63063 -18.75767 -18.22975 -17.39354 -17.24696 -16.90497 -15.85575 -15.33291 -15.30602 -14.99567 -14.63825 -14.60893 -14.40809 -13.82366 -13.42389 -13.33529 -13.20041 -12.87339 -12.60447 -12.28435 -12.18977 -12.07094 -11.93010 -11.68597 -11.59887 -11.35900 -11.22648 -11.04838 -10.25943 -8.64449 -7.66282 -5.08224 1.48578 1.52987 1.59387 2.57405 2.59892 2.93042 3.36136 3.39601 3.54392 3.57442 3.99261 4.50142 4.58212 4.62079 4.63412 4.67194 4.73618 4.79825 4.88354 4.92676 5.07091 5.07714 5.15999 5.27963 5.47847 5.55929 5.60781 5.70308 5.98503 6.29388 6.49644 7.32668 8.03377 8.42782 9.31332 Molecular weight = 233.13amu Principal moments of inertia in cm(-1) A = 0.022919 B = 0.008295 C = 0.006525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.375953 B = 3374.808111 C = 4290.444724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.117 4.117 3 C 0.174 3.826 4 N -0.614 5.614 5 C -0.239 4.239 6 H 0.073 0.927 7 C -0.058 4.058 8 N -0.919 5.919 9 Si 0.953 3.047 10 H -0.273 1.273 11 H -0.299 1.299 12 H -0.300 1.300 13 C 0.161 3.839 14 C -0.114 4.114 15 C -0.140 4.140 16 C 0.243 3.757 17 F -0.202 7.202 18 F -0.194 7.194 19 C -0.150 4.150 20 H 0.037 0.963 21 H 0.051 0.949 22 H 0.048 0.952 23 H 0.022 0.978 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.013 0.987 27 H 0.241 0.759 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.128 0.872 33 H 0.111 0.889 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.761 1.970 -10.132 10.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.156 4.156 3 C 0.049 3.951 4 N -0.335 5.335 5 C -0.369 4.369 6 H 0.091 0.909 7 C -0.251 4.251 8 N -0.568 5.568 9 Si 0.784 3.216 10 H -0.198 1.198 11 H -0.226 1.226 12 H -0.227 1.227 13 C 0.035 3.965 14 C -0.135 4.135 15 C -0.178 4.178 16 C 0.207 3.793 17 F -0.183 7.183 18 F -0.175 7.175 19 C -0.188 4.188 20 H 0.057 0.943 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.041 0.959 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.031 0.969 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.122 0.878 32 H 0.146 0.854 33 H 0.129 0.871 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.719 1.985 -10.009 10.560 hybrid contribution 0.449 0.523 1.171 1.359 sum 3.168 2.508 -8.838 9.718 Atomic orbital electron populations 1.21529 0.96352 1.00378 1.00396 1.21941 0.94741 0.99554 0.99393 1.20787 0.81944 0.94704 0.97697 1.44326 1.02199 1.84768 1.02180 1.19541 0.93240 1.39295 0.84821 0.90880 1.25391 0.98215 1.01863 0.99679 1.70266 1.15811 1.48191 1.22497 0.85401 0.78077 0.77014 0.81114 1.19767 1.22643 1.22731 1.20769 0.96431 0.92694 0.86603 1.22971 0.95782 1.00683 0.94114 1.24058 0.97399 0.97584 0.98796 1.22516 0.77478 0.80733 0.98576 1.92963 1.39025 1.95663 1.90640 1.92961 1.86234 1.42205 1.96064 1.24093 0.99583 1.01647 0.93476 0.94339 0.92982 0.93306 0.95900 0.92183 0.91732 0.96930 0.94895 0.92404 0.93269 0.90015 0.87811 0.85415 0.87065 0.90686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 9.91 71.98 0.71 -3.95 16 2 C -0.12 -5.06 5.76 30.60 0.18 -4.89 16 3 C 0.17 7.98 4.85 86.38 0.42 8.40 16 4 N -0.61 -28.15 2.54 -702.01 -1.78 -29.93 16 5 C -0.24 -12.15 9.75 84.03 0.82 -11.33 16 6 H 0.07 3.61 7.87 -2.91 -0.02 3.59 16 7 C -0.06 -3.05 5.11 84.86 0.43 -2.62 16 8 N -0.92 -50.42 8.16 21.65 0.18 -50.24 16 9 Si 0.95 44.05 29.58 68.60 2.03 46.08 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 12 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 13 C 0.16 5.77 5.53 86.38 0.48 6.25 16 14 C -0.11 -3.52 3.94 -10.21 -0.04 -3.56 16 15 C -0.14 -3.30 7.42 31.12 0.23 -3.07 16 16 C 0.24 6.80 3.28 31.12 0.10 6.90 16 17 F -0.20 -5.82 17.41 44.97 0.78 -5.04 16 18 F -0.19 -5.94 17.38 44.97 0.78 -5.16 16 19 C -0.15 -4.57 7.43 31.18 0.23 -4.34 16 20 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 21 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.02 0.92 8.10 -2.38 -0.02 0.90 16 24 H 0.06 3.08 6.28 -2.39 -0.02 3.06 16 25 H 0.06 3.42 5.76 -2.39 -0.01 3.41 16 26 H 0.01 0.53 8.12 -2.39 -0.02 0.51 16 27 H 0.24 13.15 8.31 -92.71 -0.77 12.38 16 28 H 0.06 1.91 8.00 -2.39 -0.02 1.89 16 29 H 0.05 1.73 7.78 -2.39 -0.02 1.72 16 30 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 31 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.13 2.54 8.10 -2.39 -0.02 2.52 16 33 H 0.11 3.27 7.90 -2.39 -0.02 3.25 16 34 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -56.05 284.45 6.62 -49.43 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: 1.07 Total: 7.07 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: 3.56 Total: -12.21 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -1.61 Total: -80.17 kcal Atomic # 9 Polarization: -11.76 SS G_CDS: 1.56 Total: -10.20 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -56.05 6.62 -49.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394758601.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.258 kcal (2) G-P(sol) polarization free energy of solvation -56.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds