Wall clock time and date at job start Thu Apr 9 2020 12:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47360 * 2 1 4 4 H 1.08999 * 109.46636 * 304.17943 * 3 2 1 5 5 C 1.50695 * 109.47301 * 184.17501 * 3 2 1 6 6 H 1.07998 * 120.00292 * 240.00181 * 5 3 2 7 7 C 1.37886 * 119.99761 * 59.99885 * 5 3 2 8 8 N 1.31510 * 119.99958 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99675 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47244 * 90.00267 * 9 7 5 11 11 H 1.48503 * 109.46790 * 209.99896 * 9 7 5 12 12 H 1.48500 * 109.47345 * 330.00296 * 9 7 5 13 13 N 1.46906 * 109.46985 * 64.17497 * 3 2 1 14 14 C 1.46900 * 110.99668 * 207.25010 * 13 3 2 15 15 H 1.08998 * 110.05566 * 31.47320 * 14 13 3 16 16 C 1.54755 * 110.01322 * 270.11049 * 14 13 3 17 17 C 1.54889 * 103.96249 * 217.12701 * 16 14 13 18 18 C 1.54892 * 102.91591 * 37.92831 * 17 16 14 19 19 C 1.53879 * 110.02921 * 152.88964 * 14 13 3 20 20 F 1.39901 * 110.03175 * 0.02562 * 19 14 13 21 21 F 1.39900 * 110.02929 * 238.56936 * 19 14 13 22 22 H 1.08998 * 109.46965 * 294.94011 * 1 2 3 23 23 H 1.08998 * 109.46274 * 54.94226 * 1 2 3 24 24 H 1.08997 * 109.46691 * 174.93712 * 1 2 3 25 25 H 1.09001 * 109.47200 * 239.99455 * 2 1 3 26 26 H 1.09005 * 109.46991 * 119.99526 * 2 1 3 27 27 H 0.96995 * 120.00138 * 180.02562 * 8 7 5 28 28 H 1.00899 * 110.99801 * 83.29737 * 13 3 2 29 29 H 1.08999 * 110.69333 * 98.48361 * 16 14 13 30 30 H 1.09001 * 110.50356 * 335.68380 * 16 14 13 31 31 H 1.09000 * 110.76068 * 279.52118 * 17 16 14 32 32 H 1.09001 * 110.75621 * 156.32744 * 17 16 14 33 33 H 1.08999 * 110.48920 * 80.63671 * 18 17 16 34 34 H 1.09002 * 110.48573 * 203.29019 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6169 1.9774 -0.8502 5 6 3.5435 1.4437 -0.1034 6 1 4.1383 1.8920 0.6787 7 6 4.1598 0.8725 -1.1967 8 7 3.4355 0.3270 -2.1493 9 14 6.0234 0.8747 -1.3252 10 1 6.5648 -0.3537 -0.6903 11 1 6.4208 0.9089 -2.7557 12 1 6.5660 2.0705 -0.6319 13 7 1.6345 2.1053 1.2467 14 6 1.5064 3.5560 1.0541 15 1 1.1891 3.7709 0.0337 16 6 2.8584 4.2504 1.3453 17 6 2.4560 5.5765 2.0370 18 6 1.2547 5.1560 2.9197 19 6 0.4898 4.1328 2.0549 20 9 -0.0210 3.1106 2.8620 21 9 -0.5507 4.7680 1.3685 22 1 -0.3633 0.4333 0.9318 23 1 -0.3632 0.5903 -0.8412 24 1 -0.3632 -1.0237 -0.0907 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 3.8690 -0.0751 -2.9181 28 1 2.2790 1.8953 1.9941 29 1 3.3957 4.4513 0.4185 30 1 3.4649 3.6398 2.0143 31 1 2.1523 6.3200 1.3001 32 1 3.2729 5.9550 2.6515 33 1 1.6031 4.6911 3.8420 34 1 0.6234 6.0168 3.1400 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398074279.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:44 Heat of formation + Delta-G solvation = -117.295386 kcal Electronic energy + Delta-G solvation = -17582.560915 eV Core-core repulsion = 14571.217259 eV Total energy + Delta-G solvation = -3011.343656 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.129 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.30954 -46.37926 -37.67655 -35.13704 -32.13049 -30.85676 -27.52885 -27.22790 -25.21588 -22.61988 -20.95312 -20.06416 -19.62181 -17.04612 -16.77482 -16.22330 -15.49082 -14.85058 -14.26035 -13.90054 -13.83366 -13.30320 -12.96746 -12.76337 -12.62330 -12.49894 -12.06543 -11.56991 -11.45893 -11.23849 -11.20718 -10.93756 -10.85767 -10.65884 -10.53430 -10.29145 -10.16060 -9.58895 -9.43634 -9.06696 -8.41785 -7.36873 -6.03891 -4.16802 3.23514 3.31350 3.32368 4.14682 4.34355 4.44444 4.58487 4.76440 5.17384 5.25283 5.47993 5.52475 5.60939 5.72472 5.82547 5.88141 6.08675 6.28287 6.41740 6.50018 6.53666 6.55708 6.74393 7.09765 7.20557 7.39141 7.55061 7.74147 8.02194 8.06758 8.24496 8.56202 8.94192 9.50740 10.96767 Molecular weight = 233.13amu Principal moments of inertia in cm(-1) A = 0.027134 B = 0.009201 C = 0.007427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.670701 B = 3042.559456 C = 3769.091525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.217 3.783 4 H 0.032 0.968 5 C -0.545 4.545 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.673 5.673 14 C 0.059 3.941 15 H 0.096 0.904 16 C -0.137 4.137 17 C -0.125 4.125 18 C -0.161 4.161 19 C 0.284 3.716 20 F -0.188 7.188 21 F -0.207 7.207 22 H 0.048 0.952 23 H 0.036 0.964 24 H 0.025 0.975 25 H 0.091 0.909 26 H 0.031 0.969 27 H 0.262 0.738 28 H 0.335 0.665 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.308 7.808 7.124 10.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.110 3.890 4 H 0.050 0.950 5 C -0.584 4.584 6 H 0.075 0.925 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.716 3.284 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.302 5.302 14 C -0.054 4.054 15 H 0.114 0.886 16 C -0.176 4.176 17 C -0.163 4.163 18 C -0.199 4.199 19 C 0.246 3.754 20 F -0.169 7.169 21 F -0.188 7.188 22 H 0.067 0.933 23 H 0.055 0.945 24 H 0.044 0.956 25 H 0.109 0.891 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.153 0.847 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.022 7.540 6.830 10.613 hybrid contribution 1.818 0.169 -0.221 1.839 sum -1.204 7.710 6.609 10.226 Atomic orbital electron populations 1.21701 0.98932 0.98335 1.00534 1.21503 0.92162 0.99027 1.01746 1.19254 0.92984 0.91285 0.85477 0.94966 1.21851 0.92364 1.38206 1.05953 0.92537 1.24934 0.97910 0.94978 0.95680 1.69876 1.34910 1.37823 1.09553 0.86662 0.86096 0.78393 0.77211 1.20679 1.21259 1.20056 1.60718 1.54840 1.04008 1.10631 1.23021 0.92722 0.91673 0.98015 0.88569 1.23123 0.97431 0.95379 1.01675 1.22474 0.96777 0.98427 0.98584 1.23328 0.98384 0.98839 0.99392 1.21982 0.83141 0.82937 0.87304 1.92977 1.88674 1.61361 1.73871 1.92956 1.62197 1.82629 1.81047 0.93306 0.94513 0.95621 0.89095 0.94981 0.92833 0.84668 0.89939 0.90667 0.90985 0.90791 0.88862 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.73 37.16 0.36 -2.57 16 2 C -0.11 -2.53 5.45 -26.73 -0.15 -2.68 16 3 C 0.22 5.22 1.99 -68.86 -0.14 5.09 16 4 H 0.03 0.87 7.37 -51.93 -0.38 0.48 16 5 C -0.54 -13.90 7.97 -34.44 -0.27 -14.18 16 6 H 0.06 1.41 7.00 -52.49 -0.37 1.04 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.41 11.30 55.43 0.63 -23.78 16 9 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 N -0.67 -13.89 4.74 -99.50 -0.47 -14.36 16 14 C 0.06 1.07 3.10 -66.33 -0.21 0.87 16 15 H 0.10 1.91 7.25 -51.93 -0.38 1.53 16 16 C -0.14 -2.17 5.52 -24.81 -0.14 -2.31 16 17 C -0.12 -1.55 6.89 -24.74 -0.17 -1.72 16 18 C -0.16 -2.07 6.40 -25.07 -0.16 -2.23 16 19 C 0.28 4.74 2.57 -25.61 -0.07 4.67 16 20 F -0.19 -3.48 16.18 2.25 0.04 -3.45 16 21 F -0.21 -3.66 17.04 2.25 0.04 -3.62 16 22 H 0.05 1.02 7.87 -51.93 -0.41 0.61 16 23 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.09 2.41 5.97 -51.93 -0.31 2.10 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.34 6.79 7.70 -39.29 -0.30 6.49 16 29 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.07 1.21 7.25 -51.93 -0.38 0.84 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 1.11 8.12 -51.93 -0.42 0.69 16 34 H 0.08 0.95 8.11 -51.93 -0.42 0.53 16 LS Contribution 278.83 15.07 4.20 4.20 Total: -1.00 -27.01 278.83 -6.66 -33.66 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -5.04 Total: 5.23 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -1.03 Total: -13.36 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.15 Total: -38.14 kcal Atomic # 9 Polarization: -7.14 SS G_CDS: 0.07 Total: -7.07 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.01 -6.66 -33.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398074279.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.633 kcal (2) G-P(sol) polarization free energy of solvation -27.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds