Wall clock time and date at job start Thu Apr 9 2020 12:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47360 * 2 1 4 4 H 1.08999 * 109.46636 * 304.17943 * 3 2 1 5 5 C 1.50695 * 109.47301 * 184.17501 * 3 2 1 6 6 H 1.07998 * 120.00292 * 240.00181 * 5 3 2 7 7 C 1.37886 * 119.99761 * 59.99885 * 5 3 2 8 8 N 1.31510 * 119.99958 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99675 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47244 * 90.00267 * 9 7 5 11 11 H 1.48503 * 109.46790 * 209.99896 * 9 7 5 12 12 H 1.48500 * 109.47345 * 330.00296 * 9 7 5 13 13 N 1.46906 * 109.46985 * 64.17497 * 3 2 1 14 14 C 1.46900 * 110.99668 * 207.25010 * 13 3 2 15 15 H 1.08998 * 110.05566 * 31.47320 * 14 13 3 16 16 C 1.54755 * 110.01322 * 270.11049 * 14 13 3 17 17 C 1.54889 * 103.96249 * 217.12701 * 16 14 13 18 18 C 1.54892 * 102.91591 * 37.92831 * 17 16 14 19 19 C 1.53879 * 110.02921 * 152.88964 * 14 13 3 20 20 F 1.39901 * 110.03175 * 0.02562 * 19 14 13 21 21 F 1.39900 * 110.02929 * 238.56936 * 19 14 13 22 22 H 1.08998 * 109.46965 * 294.94011 * 1 2 3 23 23 H 1.08998 * 109.46274 * 54.94226 * 1 2 3 24 24 H 1.08997 * 109.46691 * 174.93712 * 1 2 3 25 25 H 1.09001 * 109.47200 * 239.99455 * 2 1 3 26 26 H 1.09005 * 109.46991 * 119.99526 * 2 1 3 27 27 H 0.96995 * 120.00138 * 180.02562 * 8 7 5 28 28 H 1.00899 * 110.99801 * 83.29737 * 13 3 2 29 29 H 1.08999 * 110.69333 * 98.48361 * 16 14 13 30 30 H 1.09001 * 110.50356 * 335.68380 * 16 14 13 31 31 H 1.09000 * 110.76068 * 279.52118 * 17 16 14 32 32 H 1.09001 * 110.75621 * 156.32744 * 17 16 14 33 33 H 1.08999 * 110.48920 * 80.63671 * 18 17 16 34 34 H 1.09002 * 110.48573 * 203.29019 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6169 1.9774 -0.8502 5 6 3.5435 1.4437 -0.1034 6 1 4.1383 1.8920 0.6787 7 6 4.1598 0.8725 -1.1967 8 7 3.4355 0.3270 -2.1493 9 14 6.0234 0.8747 -1.3252 10 1 6.5648 -0.3537 -0.6903 11 1 6.4208 0.9089 -2.7557 12 1 6.5660 2.0705 -0.6319 13 7 1.6345 2.1053 1.2467 14 6 1.5064 3.5560 1.0541 15 1 1.1891 3.7709 0.0337 16 6 2.8584 4.2504 1.3453 17 6 2.4560 5.5765 2.0370 18 6 1.2547 5.1560 2.9197 19 6 0.4898 4.1328 2.0549 20 9 -0.0210 3.1106 2.8620 21 9 -0.5507 4.7680 1.3685 22 1 -0.3633 0.4333 0.9318 23 1 -0.3632 0.5903 -0.8412 24 1 -0.3632 -1.0237 -0.0907 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 3.8690 -0.0751 -2.9181 28 1 2.2790 1.8953 1.9941 29 1 3.3957 4.4513 0.4185 30 1 3.4649 3.6398 2.0143 31 1 2.1523 6.3200 1.3001 32 1 3.2729 5.9550 2.6515 33 1 1.6031 4.6911 3.8420 34 1 0.6234 6.0168 3.1400 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398074279.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:44 Heat of formation + Delta-G solvation = -132.420043 kcal Electronic energy + Delta-G solvation = -17583.216770 eV Core-core repulsion = 14571.217259 eV Total energy + Delta-G solvation = -3011.999511 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.129 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.69059 -47.77861 -39.15131 -36.78012 -34.00959 -32.56428 -28.97498 -28.72975 -26.89561 -24.49064 -22.12508 -21.56772 -21.40477 -18.66939 -18.39300 -17.71937 -16.81614 -16.74363 -15.79401 -15.39193 -15.18736 -14.86785 -14.68236 -14.18206 -14.12671 -13.93115 -13.69293 -13.26458 -13.09090 -12.87078 -12.77823 -12.60380 -12.37419 -12.15833 -11.94746 -11.81668 -11.66774 -11.49535 -11.21275 -10.94083 -10.45252 -9.09603 -8.04218 -6.25028 1.40409 1.42581 1.50467 2.41438 2.87735 3.11712 3.18837 3.30605 3.52215 3.89832 4.25085 4.28564 4.38284 4.48565 4.55920 4.59614 4.72745 4.84131 4.89461 5.05949 5.08699 5.14805 5.21188 5.31128 5.38414 5.50570 5.61637 5.75367 6.07938 6.15371 6.33003 6.74771 6.99301 7.46033 8.93869 Molecular weight = 233.13amu Principal moments of inertia in cm(-1) A = 0.027134 B = 0.009201 C = 0.007427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.670701 B = 3042.559456 C = 3769.091525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.226 3.774 4 H -0.004 1.004 5 C -0.549 4.549 6 H 0.062 0.938 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.951 3.049 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 N -0.672 5.672 14 C 0.050 3.950 15 H 0.070 0.930 16 C -0.133 4.133 17 C -0.112 4.112 18 C -0.148 4.148 19 C 0.278 3.722 20 F -0.200 7.200 21 F -0.215 7.215 22 H 0.051 0.949 23 H 0.027 0.973 24 H 0.045 0.955 25 H 0.063 0.937 26 H 0.030 0.970 27 H 0.260 0.740 28 H 0.339 0.661 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.559 9.032 8.749 12.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.142 4.142 3 C 0.118 3.882 4 H 0.014 0.986 5 C -0.588 4.588 6 H 0.081 0.919 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.777 3.223 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.190 1.190 13 N -0.301 5.301 14 C -0.062 4.062 15 H 0.088 0.912 16 C -0.172 4.172 17 C -0.150 4.150 18 C -0.186 4.186 19 C 0.241 3.759 20 F -0.181 7.181 21 F -0.196 7.196 22 H 0.070 0.930 23 H 0.046 0.954 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.157 0.843 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.122 0.878 33 H 0.127 0.873 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.277 8.784 8.474 12.416 hybrid contribution 1.534 -0.217 -0.753 1.722 sum -0.743 8.567 7.722 11.557 Atomic orbital electron populations 1.21558 0.96936 0.99499 1.00263 1.21387 0.93941 0.98608 1.00243 1.18984 0.92276 0.91221 0.85726 0.98588 1.22138 0.93212 1.37523 1.05895 0.91948 1.25684 1.02037 0.94901 0.95552 1.70018 1.36496 1.38774 1.10060 0.85673 0.81129 0.78583 0.76920 1.20473 1.21515 1.19006 1.60607 1.54664 1.05710 1.09093 1.23095 0.95018 0.90570 0.97525 0.91169 1.23003 0.95536 0.97342 1.01354 1.22462 0.97469 0.96358 0.98725 1.23340 0.98015 0.98288 0.98999 1.22257 0.82622 0.83674 0.87359 1.92952 1.88855 1.62252 1.74013 1.92941 1.62614 1.82619 1.81432 0.92953 0.95389 0.93597 0.91820 0.95071 0.93036 0.84286 0.91575 0.90730 0.90221 0.87820 0.87317 0.87484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.34 9.73 71.98 0.70 -4.64 16 2 C -0.10 -5.02 5.45 30.60 0.17 -4.85 16 3 C 0.23 11.13 1.99 44.17 0.09 11.22 16 4 H 0.00 -0.21 7.37 -2.39 -0.02 -0.23 16 5 C -0.55 -28.22 7.97 25.60 0.20 -28.01 16 6 H 0.06 3.07 7.00 -2.91 -0.02 3.05 16 7 C 0.02 0.96 5.29 84.66 0.45 1.41 16 8 N -0.91 -51.64 11.30 21.45 0.24 -51.40 16 9 Si 0.95 42.06 29.54 68.60 2.03 44.09 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 11 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 13 N -0.67 -27.84 4.74 -468.72 -2.22 -30.06 16 14 C 0.05 1.84 3.10 45.81 0.14 1.98 16 15 H 0.07 2.90 7.25 -2.39 -0.02 2.88 16 16 C -0.13 -4.05 5.52 31.84 0.18 -3.87 16 17 C -0.11 -2.41 6.89 31.89 0.22 -2.19 16 18 C -0.15 -3.30 6.40 31.67 0.20 -3.10 16 19 C 0.28 8.90 2.57 31.32 0.08 8.98 16 20 F -0.20 -7.15 16.18 44.97 0.73 -6.42 16 21 F -0.21 -7.38 17.04 44.97 0.77 -6.62 16 22 H 0.05 2.17 7.87 -2.39 -0.02 2.15 16 23 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.06 3.47 5.97 -2.39 -0.01 3.45 16 26 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 27 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 28 H 0.34 13.55 7.70 -89.69 -0.69 12.86 16 29 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.07 2.27 7.25 -2.39 -0.02 2.26 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.11 2.14 8.12 -2.39 -0.02 2.12 16 34 H 0.11 1.96 8.11 -2.39 -0.02 1.94 16 Total: -1.00 -58.33 278.83 4.37 -53.97 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.40 Total: 19.53 kcal Atomic # 6 Polarization: -25.51 SS G_CDS: 2.43 Total: -23.08 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -1.98 Total: -81.46 kcal Atomic # 9 Polarization: -14.53 SS G_CDS: 1.49 Total: -13.04 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -58.33 4.37 -53.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398074279.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.453 kcal (2) G-P(sol) polarization free energy of solvation -58.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds