Wall clock time and date at job start Thu Apr 9 2020 12:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47419 * 338.51748 * 3 2 1 5 5 C 1.36826 * 119.99781 * 251.46598 * 4 3 2 6 6 H 1.07997 * 119.99708 * 209.23614 * 5 4 3 7 7 C 1.39077 * 119.99659 * 29.24409 * 5 4 3 8 8 N 1.31341 * 120.00023 * 359.36060 * 7 5 4 9 9 Si 1.86798 * 119.99530 * 179.35544 * 7 5 4 10 10 H 1.48494 * 109.47341 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46933 * 120.00187 * 9 7 5 12 12 H 1.48506 * 109.46886 * 240.00039 * 9 7 5 13 13 C 1.34771 * 120.00351 * 71.47050 * 4 3 2 14 14 O 1.21664 * 120.00376 * 179.97438 * 13 4 3 15 15 C 1.46957 * 119.99756 * 0.27637 * 13 4 3 16 16 C 1.33123 * 120.00102 * 178.72017 * 15 13 4 17 17 C 1.50698 * 119.99826 * 353.66239 * 16 15 13 18 18 C 1.53786 * 113.61608 * 203.32706 * 17 16 15 19 19 C 1.53950 * 87.01807 * 220.04781 * 18 17 16 20 20 C 1.53782 * 87.11659 * 25.36137 * 19 18 17 21 21 H 4.40638 * 5.51439 * 179.97438 * 4 1 2 22 22 H 1.08998 * 109.46831 * 218.51282 * 3 2 1 23 23 H 1.09002 * 109.46966 * 98.52060 * 3 2 1 24 24 H 0.97004 * 119.99732 * 180.02562 * 8 7 5 25 25 H 1.08002 * 120.00081 * 358.71519 * 15 13 4 26 26 H 1.07996 * 120.00234 * 173.66002 * 16 15 13 27 27 H 1.09003 * 112.85508 * 334.52104 * 17 16 15 28 28 H 1.09005 * 113.60771 * 334.56487 * 18 17 16 29 29 H 1.08996 * 113.61781 * 105.46559 * 18 17 16 30 30 H 1.08998 * 113.53979 * 270.80899 * 19 18 17 31 31 H 1.09003 * 113.74358 * 139.94352 * 19 18 17 32 32 H 1.08995 * 113.61496 * 220.09011 * 20 19 18 33 33 H 1.09001 * 113.61376 * 89.18751 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.2843 0.5058 5 6 3.7181 -1.3559 1.7415 6 1 4.4703 -2.1048 1.9410 7 6 3.3421 -0.4644 2.7405 8 7 2.4363 0.4542 2.4941 9 14 4.1253 -0.5737 4.4328 10 1 5.1083 -1.6865 4.4525 11 1 4.8167 0.7037 4.7417 12 1 3.0730 -0.8255 5.4500 13 6 3.0104 -2.3959 -0.2460 14 8 3.4169 -3.4630 0.1739 15 6 2.3896 -2.3179 -1.5757 16 6 2.2896 -3.4111 -2.3288 17 6 2.9381 -4.6959 -1.8818 18 6 3.2372 -5.6686 -3.0347 19 6 2.7817 -6.7982 -2.0931 20 6 1.9385 -5.7415 -1.3600 21 1 -1.0498 -0.0003 0.0003 22 1 3.0089 0.8049 0.6399 23 1 3.0092 0.1531 -1.0163 24 1 2.1744 1.0762 3.1908 25 1 2.0144 -1.3737 -1.9419 26 1 1.7437 -3.3772 -3.2600 27 1 3.7864 -4.5330 -1.2169 28 1 2.5881 -5.5330 -3.8999 29 1 4.2931 -5.7195 -3.3004 30 1 3.5878 -7.2110 -1.4866 31 1 2.1863 -7.5669 -2.5857 32 1 1.9474 -5.8512 -0.2756 33 1 0.9337 -5.6259 -1.7665 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490960785.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:07 Heat of formation + Delta-G solvation = 58.810833 kcal Electronic energy + Delta-G solvation = -16146.565543 eV Core-core repulsion = 13561.254861 eV Total energy + Delta-G solvation = -2585.310683 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.77690 -39.32528 -37.01864 -34.33491 -33.34193 -32.98399 -28.42492 -27.35554 -26.38774 -25.77762 -22.93926 -20.40257 -19.99218 -19.47400 -18.49649 -17.95885 -16.64563 -16.34867 -15.89212 -15.82754 -15.22255 -14.47686 -14.25687 -14.19084 -13.63146 -13.29723 -13.19229 -13.12723 -12.97595 -12.88595 -12.55935 -12.14038 -11.54907 -11.37795 -11.27700 -11.09880 -10.97752 -10.66860 -10.04346 -9.88297 -9.64386 -8.28227 -6.01865 0.65212 1.38996 1.41058 1.53517 2.00688 2.25533 2.32421 2.57828 3.14816 3.30318 3.83005 3.84699 3.91741 3.96327 4.18676 4.27882 4.41035 4.65827 4.75930 4.86283 4.91053 5.09076 5.13231 5.14073 5.21437 5.31532 5.40063 5.43531 5.52762 5.68500 5.89860 6.21045 6.53812 7.02945 7.17389 7.44600 8.06170 8.67953 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.028204 B = 0.007715 C = 0.006510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.518801 B = 3628.312762 C = 4300.323527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.165 4.165 3 C 0.220 3.780 4 N -0.453 5.453 5 C -0.337 4.337 6 H 0.074 0.926 7 C -0.002 4.002 8 N -0.887 5.887 9 Si 0.989 3.011 10 H -0.275 1.275 11 H -0.264 1.264 12 H -0.280 1.280 13 C 0.471 3.529 14 O -0.610 6.610 15 C -0.217 4.217 16 C -0.062 4.062 17 C -0.114 4.114 18 C -0.124 4.124 19 C -0.130 4.130 20 C -0.126 4.126 21 H 0.239 0.761 22 H 0.118 0.882 23 H 0.081 0.919 24 H 0.272 0.728 25 H 0.129 0.871 26 H 0.155 0.845 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.035 0.965 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.362 -3.920 -9.675 10.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.166 4.166 3 C 0.098 3.902 4 N -0.171 5.171 5 C -0.465 4.465 6 H 0.092 0.908 7 C -0.204 4.204 8 N -0.526 5.526 9 Si 0.813 3.187 10 H -0.199 1.199 11 H -0.189 1.189 12 H -0.205 1.205 13 C 0.264 3.736 14 O -0.498 6.498 15 C -0.238 4.238 16 C -0.082 4.082 17 C -0.132 4.132 18 C -0.161 4.161 19 C -0.168 4.168 20 C -0.164 4.164 21 H 0.255 0.745 22 H 0.135 0.865 23 H 0.099 0.901 24 H 0.082 0.918 25 H 0.147 0.853 26 H 0.172 0.828 27 H 0.115 0.885 28 H 0.119 0.881 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.054 0.946 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.205 -4.227 -9.328 10.476 hybrid contribution 0.070 0.373 1.308 1.362 sum -2.134 -3.854 -8.020 9.150 Atomic orbital electron populations 1.25291 0.96431 1.00772 1.03619 1.23714 0.95187 0.99861 0.97811 1.18565 0.84345 0.88821 0.98454 1.43724 1.51490 1.06119 1.15762 1.19617 1.20195 1.18215 0.88487 0.90833 1.26136 0.96248 0.95559 1.02452 1.69955 1.30239 1.17829 1.34537 0.84937 0.77901 0.78477 0.77384 1.19936 1.18902 1.20544 1.19211 0.82910 0.83383 0.88100 1.90460 1.55304 1.28884 1.75192 1.22766 1.05675 1.00768 0.94553 1.23889 0.93416 0.93023 0.97894 1.22231 1.00523 0.91668 0.98802 1.23022 1.01734 0.94888 0.96492 1.22766 0.99415 0.96415 0.98171 1.22741 0.98325 0.96401 0.98932 0.74457 0.86473 0.90141 0.91802 0.85281 0.82806 0.88477 0.88121 0.91457 0.91155 0.89405 0.94643 0.89478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.50 19.25 74.32 1.43 -8.07 16 2 C -0.16 -7.33 10.94 31.12 0.34 -6.99 16 3 C 0.22 10.21 4.78 84.57 0.40 10.62 16 4 N -0.45 -24.15 2.67 -649.70 -1.73 -25.88 16 5 C -0.34 -19.38 9.17 84.12 0.77 -18.61 16 6 H 0.07 4.48 7.51 -2.91 -0.02 4.46 16 7 C 0.00 -0.13 5.28 84.97 0.45 0.32 16 8 N -0.89 -47.11 9.54 21.68 0.21 -46.91 16 9 Si 0.99 43.22 29.55 68.60 2.03 45.24 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 12 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 13 C 0.47 24.10 7.34 86.53 0.64 24.74 16 14 O -0.61 -34.45 12.75 -4.23 -0.05 -34.51 16 15 C -0.22 -8.62 8.79 23.41 0.21 -8.41 16 16 C -0.06 -2.04 9.30 24.54 0.23 -1.82 16 17 C -0.11 -3.95 2.81 -11.01 -0.03 -3.98 16 18 C -0.12 -3.09 7.64 31.18 0.24 -2.85 16 19 C -0.13 -3.30 8.09 31.18 0.25 -3.04 16 20 C -0.13 -4.06 7.63 31.12 0.24 -3.82 16 21 H 0.24 6.99 7.80 -4.43 -0.03 6.96 16 22 H 0.12 5.86 5.74 -2.39 -0.01 5.85 16 23 H 0.08 3.17 7.25 -2.39 -0.02 3.16 16 24 H 0.27 13.62 8.31 -92.70 -0.77 12.85 16 25 H 0.13 4.63 6.00 -2.91 -0.02 4.61 16 26 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 27 H 0.10 4.31 5.36 -3.62 -0.02 4.29 16 28 H 0.10 1.97 8.09 -2.38 -0.02 1.95 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.09 2.45 8.09 -2.39 -0.02 2.43 16 Total: -1.00 -66.92 281.63 6.69 -60.22 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 1.09 Total: 23.74 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: 5.16 Total: -21.92 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -1.53 Total: -72.79 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.05 Total: -34.51 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -66.92 6.69 -60.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490960785.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.034 kcal (2) G-P(sol) polarization free energy of solvation -66.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds