Wall clock time and date at job start Thu Apr 9 2020 12:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47509 * 302.98954 * 3 2 1 5 5 C 1.36939 * 120.00299 * 263.94847 * 4 3 2 6 6 H 1.08000 * 119.99697 * 142.63281 * 5 4 3 7 7 C 1.38806 * 119.99654 * 322.62951 * 5 4 3 8 8 N 1.31629 * 119.99642 * 157.67501 * 7 5 4 9 9 Si 1.86792 * 120.00541 * 337.67700 * 7 5 4 10 10 H 1.48499 * 109.47465 * 95.72161 * 9 7 5 11 11 H 1.48503 * 109.47579 * 215.72347 * 9 7 5 12 12 H 1.48502 * 109.47288 * 335.71843 * 9 7 5 13 13 C 1.46502 * 119.99681 * 83.94540 * 4 3 2 14 14 C 1.53004 * 109.46977 * 89.99951 * 13 4 3 15 15 N 1.46500 * 109.47250 * 179.97438 * 14 13 4 16 16 C 1.34944 * 126.03464 * 125.00111 * 15 14 13 17 17 C 1.35319 * 107.74367 * 179.77480 * 16 15 14 18 18 C 1.50706 * 126.03889 * 180.20634 * 17 16 15 19 19 C 1.39865 * 107.92271 * 0.23019 * 17 16 15 20 20 N 1.30834 * 108.20133 * 359.97438 * 19 17 16 21 21 H 4.40639 * 5.51390 * 179.97438 * 4 1 2 22 22 H 1.09007 * 109.46440 * 182.99276 * 3 2 1 23 23 H 1.09004 * 109.47333 * 62.99778 * 3 2 1 24 24 H 0.96995 * 119.99557 * 179.97438 * 8 7 5 25 25 H 1.08995 * 109.47620 * 330.00361 * 13 4 3 26 26 H 1.09003 * 109.47596 * 210.00090 * 13 4 3 27 27 H 1.09004 * 109.46810 * 60.00583 * 14 13 4 28 28 H 1.08992 * 109.47310 * 300.00038 * 14 13 4 29 29 H 1.07995 * 126.12773 * 0.03795 * 16 15 14 30 30 H 1.08999 * 109.46837 * 90.00146 * 18 17 16 31 31 H 1.08998 * 109.46985 * 210.00026 * 18 17 16 32 32 H 1.09001 * 109.46941 * 330.00132 * 18 17 16 33 33 H 1.07999 * 125.90073 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.7511 1.1584 5 6 3.4806 -0.0906 2.3071 6 1 3.2628 -0.5303 3.2692 7 6 4.1112 1.1438 2.2347 8 7 4.0556 1.9721 3.2562 9 14 5.0387 1.6297 0.6878 10 1 4.1548 2.4444 -0.1840 11 1 6.2373 2.4243 1.0582 12 1 5.4615 0.4066 -0.0406 13 6 3.2534 -2.2096 1.0881 14 6 4.6471 -2.5840 0.5796 15 7 4.7661 -4.0424 0.5098 16 6 5.1146 -4.7593 -0.5791 17 6 5.1132 -6.0667 -0.2299 18 6 5.4475 -7.2259 -1.1330 19 6 4.7463 -6.1520 1.1170 20 7 4.5355 -4.9394 1.5608 21 1 -1.0498 0.0000 0.0003 22 1 3.0088 1.0272 0.0537 23 1 3.0096 -0.4658 -0.9157 24 1 4.4966 2.8345 3.2058 25 1 2.5000 -2.6030 0.4057 26 1 3.1024 -2.6348 2.0803 27 1 5.4006 -2.1906 1.2621 28 1 4.7982 -2.1589 -0.4126 29 1 5.3560 -4.3607 -1.5533 30 1 6.5161 -7.4335 -1.0774 31 1 4.8893 -8.1066 -0.8154 32 1 5.1788 -6.9761 -2.1594 33 1 4.6531 -7.0618 1.6916 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491071654.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:26 Heat of formation + Delta-G solvation = 156.432190 kcal Electronic energy + Delta-G solvation = -15729.057068 eV Core-core repulsion = 13180.272316 eV Total energy + Delta-G solvation = -2548.784752 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.90871 -36.76548 -33.70804 -32.37861 -31.67537 -31.13517 -28.84108 -26.50009 -25.82834 -23.95592 -21.32012 -20.37736 -19.72962 -18.19893 -16.71260 -16.41136 -15.41843 -15.18255 -14.39145 -13.93894 -13.80221 -13.46206 -13.15060 -12.94976 -12.84370 -12.67840 -12.32856 -11.81551 -11.78388 -11.50663 -10.85415 -10.65033 -10.54877 -10.22441 -9.94859 -9.56284 -9.31897 -9.15432 -8.72003 -8.10151 -7.18150 -6.14934 -3.60651 2.19102 2.83013 3.00527 3.15361 3.30245 3.32333 3.47509 3.55892 4.34471 4.74877 4.99444 5.02241 5.13972 5.22789 5.32843 5.41278 5.60484 5.69891 5.73192 5.87449 5.97981 6.02946 6.06243 6.28648 6.29472 6.38890 6.58799 6.70286 6.91728 7.33787 7.83913 8.01232 8.22335 8.33761 8.76418 9.50669 9.86142 10.99993 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.027027 B = 0.006759 C = 0.006188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.735160 B = 4141.418294 C = 4523.595046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.165 4.165 3 C 0.226 3.774 4 N -0.590 5.590 5 C -0.278 4.278 6 H 0.084 0.916 7 C 0.041 3.959 8 N -0.889 5.889 9 Si 0.870 3.130 10 H -0.282 1.282 11 H -0.295 1.295 12 H -0.266 1.266 13 C 0.146 3.854 14 C 0.105 3.895 15 N -0.354 5.354 16 C 0.048 3.952 17 C -0.257 4.257 18 C -0.067 4.067 19 C 0.035 3.965 20 N -0.286 5.286 21 H 0.207 0.793 22 H 0.084 0.916 23 H 0.063 0.937 24 H 0.266 0.734 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.167 0.833 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.473 -12.059 -10.229 15.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.168 4.168 3 C 0.101 3.899 4 N -0.310 5.310 5 C -0.406 4.406 6 H 0.102 0.898 7 C -0.161 4.161 8 N -0.528 5.528 9 Si 0.699 3.301 10 H -0.210 1.210 11 H -0.222 1.222 12 H -0.191 1.191 13 C 0.019 3.981 14 C -0.018 4.018 15 N -0.136 5.136 16 C -0.099 4.099 17 C -0.269 4.269 18 C -0.125 4.125 19 C -0.151 4.151 20 N -0.108 5.108 21 H 0.224 0.776 22 H 0.102 0.898 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.090 0.910 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.184 0.816 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.215 -10.980 -9.080 14.300 hybrid contribution 0.588 0.060 -1.496 1.609 sum 1.802 -10.920 -10.576 15.309 Atomic orbital electron populations 1.24698 0.95717 1.03272 1.03230 1.24845 0.95847 0.98184 0.97931 1.18521 0.82767 0.97957 0.90684 1.44051 1.72683 1.01211 1.13080 1.18830 1.34314 1.02322 0.85169 0.89849 1.25490 0.97447 0.96620 0.96542 1.69869 1.43169 1.07974 1.31802 0.87034 0.80342 0.78511 0.84220 1.20972 1.22226 1.19098 1.21146 0.91451 0.84706 1.00823 1.22884 1.03651 0.72037 1.03208 1.48956 1.50454 1.07317 1.06855 1.22339 1.02012 0.92030 0.93559 1.20059 1.16329 0.94336 0.96133 1.19980 1.00547 0.94772 0.97202 1.23717 1.00853 0.96089 0.94417 1.77399 1.22769 0.99030 1.11619 0.77649 0.89845 0.91929 0.92354 0.93605 0.91050 0.89023 0.89690 0.81603 0.92622 0.92243 0.92569 0.80659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.67 19.25 29.55 0.57 -4.10 16 2 C -0.17 -3.48 13.66 -37.12 -0.51 -3.98 16 3 C 0.23 4.81 4.77 -6.83 -0.03 4.78 16 4 N -0.59 -13.59 2.05 -176.57 -0.36 -13.96 16 5 C -0.28 -7.57 9.92 -15.06 -0.15 -7.71 16 6 H 0.08 2.50 8.06 -52.49 -0.42 2.07 16 7 C 0.04 1.14 5.27 -17.43 -0.09 1.04 16 8 N -0.89 -26.42 13.97 55.49 0.78 -25.64 16 9 Si 0.87 20.57 25.03 -169.99 -4.25 16.32 16 10 H -0.28 -6.50 6.69 56.52 0.38 -6.12 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 13 C 0.15 2.92 5.86 -4.04 -0.02 2.90 16 14 C 0.11 1.87 6.83 -4.04 -0.03 1.84 16 15 N -0.35 -5.97 3.68 -61.37 -0.23 -6.19 16 16 C 0.05 0.68 11.36 -17.22 -0.20 0.48 16 17 C -0.26 -3.38 6.10 -105.05 -0.64 -4.02 16 18 C -0.07 -0.64 10.37 36.01 0.37 -0.26 16 19 C 0.03 0.50 11.96 -17.37 -0.21 0.29 16 20 N -0.29 -5.09 12.42 30.62 0.38 -4.71 16 21 H 0.21 2.94 7.80 -54.10 -0.42 2.52 16 22 H 0.08 1.91 3.57 -51.92 -0.19 1.73 16 23 H 0.06 1.13 8.12 -51.93 -0.42 0.71 16 24 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.05 0.87 8.07 -51.93 -0.42 0.45 16 26 H 0.07 1.55 8.04 -51.93 -0.42 1.13 16 27 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 28 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 29 H 0.17 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.18 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 292.11 15.07 4.40 4.40 Total: -1.00 -31.08 292.11 -4.62 -35.70 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.40 Total: 2.82 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -0.93 Total: -8.75 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: 0.57 Total: -50.50 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.25 Total: 16.32 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.08 -4.62 -35.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491071654.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.134 kcal (2) G-P(sol) polarization free energy of solvation -31.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds