Wall clock time and date at job start Thu Apr 9 2020 12:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46493 * 109.46981 * 261.30371 * 3 2 1 5 5 C 1.37105 * 120.00201 * 262.74413 * 4 3 2 6 6 H 1.07991 * 120.00127 * 176.17838 * 5 4 3 7 7 C 1.38942 * 119.99651 * 356.17557 * 5 4 3 8 8 N 1.31413 * 120.00027 * 30.92786 * 7 5 4 9 9 Si 1.86799 * 120.00205 * 210.92728 * 7 5 4 10 10 H 1.48497 * 109.47245 * 89.99785 * 9 7 5 11 11 H 1.48504 * 109.47201 * 210.00599 * 9 7 5 12 12 H 1.48507 * 109.46789 * 329.99910 * 9 7 5 13 13 C 1.34784 * 120.00310 * 82.74389 * 4 3 2 14 14 O 1.21298 * 119.99579 * 3.21660 * 13 4 3 15 15 C 1.50699 * 120.00364 * 182.94097 * 13 4 3 16 16 C 1.53002 * 119.29389 * 299.99695 * 15 13 4 17 17 C 1.53004 * 60.37630 * 248.69012 * 16 15 13 18 18 H 1.08997 * 119.29603 * 111.30495 * 17 16 15 19 19 C 1.54260 * 118.20180 * 266.38364 * 17 16 15 20 20 C 1.54895 * 104.19400 * 87.78756 * 19 17 16 21 21 C 1.54263 * 117.41102 * 94.33573 * 15 13 4 22 22 H 4.40638 * 5.51391 * 179.97438 * 4 1 2 23 23 H 1.09001 * 109.46980 * 141.30535 * 3 2 1 24 24 H 1.08999 * 109.47247 * 21.30270 * 3 2 1 25 25 H 0.97004 * 119.99943 * 180.02562 * 8 7 5 26 26 H 1.08992 * 117.46412 * 356.28842 * 16 15 13 27 27 H 1.09002 * 117.46145 * 141.09734 * 16 15 13 28 28 H 1.08997 * 110.49232 * 206.46565 * 19 17 16 29 29 H 1.09000 * 110.48841 * 329.11434 * 19 17 16 30 30 H 1.09005 * 110.75237 * 80.37614 * 20 19 17 31 31 H 1.09006 * 110.75379 * 203.55655 * 20 19 17 32 32 H 1.09008 * 110.48664 * 235.04910 * 21 15 13 33 33 H 1.08993 * 110.49089 * 357.68874 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.2097 1.3653 5 6 3.5035 1.4643 1.7767 6 1 3.8046 1.6300 2.8005 7 6 3.4905 2.5225 0.8764 8 7 2.6205 2.5366 -0.1084 9 14 4.7095 3.9252 1.0659 10 1 5.9440 3.6148 0.3012 11 1 4.1067 5.1786 0.5454 12 1 5.0468 4.0973 2.5019 13 6 3.2203 -0.8313 2.2171 14 8 2.9493 -1.9506 1.8361 15 6 3.6593 -0.6057 3.6409 16 6 5.0405 -0.0060 3.9124 17 6 4.7628 -1.4641 4.2836 18 1 5.2582 -2.2597 3.7272 19 6 4.2984 -1.7746 5.7215 20 6 2.7572 -1.6309 5.6622 21 6 2.5565 -0.4055 4.7008 22 1 -1.0500 0.0002 -0.0001 23 1 3.0090 0.8029 -0.6425 24 1 3.0098 -0.9566 -0.3733 25 1 2.6116 3.2752 -0.7372 26 1 5.6853 0.1800 3.0536 27 1 5.1250 0.7128 4.7275 28 1 4.5763 -2.7907 6.0012 29 1 4.7218 -1.0555 6.4228 30 1 2.3014 -2.5291 5.2454 31 1 2.3510 -1.4164 6.6507 32 1 2.7111 0.5288 5.2406 33 1 1.5717 -0.4189 4.2340 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491425787.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:31 Heat of formation + Delta-G solvation = 58.578596 kcal Electronic energy + Delta-G solvation = -16623.900879 eV Core-core repulsion = 14038.580126 eV Total energy + Delta-G solvation = -2585.320753 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.68122 -37.40992 -34.98801 -32.08951 -31.53037 -30.87680 -28.11863 -26.47057 -24.74502 -22.38567 -20.99160 -19.91785 -18.66432 -17.59707 -16.65851 -15.75492 -14.84499 -14.70452 -14.35073 -13.87121 -13.75890 -12.78931 -12.75528 -12.48745 -12.15237 -11.91959 -11.69404 -11.17858 -11.01034 -10.79216 -10.70213 -10.58677 -10.43029 -10.39971 -9.69287 -9.49883 -9.22277 -9.02899 -8.79322 -8.28435 -7.96801 -6.46833 -3.84811 3.07774 3.20494 3.22088 3.66295 3.84004 4.10693 4.13148 4.16157 4.80083 4.93856 5.06192 5.15006 5.31988 5.61445 5.63512 5.80133 5.87414 5.93949 6.05036 6.11165 6.18924 6.27837 6.37566 6.56729 6.58348 6.73626 6.74732 6.84013 7.06176 7.17904 7.48371 7.63277 8.35906 8.82824 9.01996 9.47432 9.87827 10.52432 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.021901 B = 0.011027 C = 0.008283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.195637 B = 2538.707557 C = 3379.658272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.111 4.111 3 C 0.206 3.794 4 N -0.432 5.432 5 C -0.333 4.333 6 H 0.112 0.888 7 C 0.036 3.964 8 N -0.849 5.849 9 Si 0.910 3.090 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.493 3.507 14 O -0.602 6.602 15 C -0.127 4.127 16 C -0.130 4.130 17 C -0.154 4.154 18 H 0.106 0.894 19 C -0.090 4.090 20 C -0.121 4.121 21 C -0.074 4.074 22 H 0.201 0.799 23 H 0.146 0.854 24 H 0.063 0.937 25 H 0.270 0.730 26 H 0.103 0.897 27 H 0.089 0.911 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.819 -1.547 6.643 7.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.113 4.113 3 C 0.084 3.916 4 N -0.149 5.149 5 C -0.460 4.460 6 H 0.130 0.870 7 C -0.169 4.169 8 N -0.487 5.487 9 Si 0.736 3.264 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.282 3.718 14 O -0.488 6.488 15 C -0.130 4.130 16 C -0.167 4.167 17 C -0.173 4.173 18 H 0.124 0.876 19 C -0.128 4.128 20 C -0.159 4.159 21 C -0.112 4.112 22 H 0.218 0.782 23 H 0.163 0.837 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.121 0.879 27 H 0.107 0.893 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.636 -1.943 6.273 7.076 hybrid contribution 0.134 0.964 -0.080 0.977 sum 2.770 -0.979 6.193 6.854 Atomic orbital electron populations 1.24361 0.95484 1.06853 1.02825 1.23646 0.94749 0.95092 0.97782 1.19079 0.83687 1.02298 0.86551 1.43833 1.54107 1.07432 1.09483 1.19851 1.43231 0.84448 0.98468 0.86997 1.25208 0.96482 0.98855 0.96309 1.70126 1.29378 1.31996 1.17205 0.86190 0.81193 0.79965 0.79038 1.20173 1.21143 1.19261 1.18944 0.83080 0.84449 0.85355 1.90529 1.56536 1.23920 1.77851 1.21932 0.90641 1.06272 0.94185 1.23073 0.97286 0.93910 1.02432 1.23348 1.03009 0.94804 0.96128 0.87585 1.21886 0.95393 1.00879 0.94633 1.23032 0.95641 0.98672 0.98520 1.22109 0.97508 0.97467 0.94086 0.78187 0.83734 0.91900 0.91911 0.87901 0.89252 0.91685 0.91712 0.91314 0.91915 0.91357 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.33 19.25 29.55 0.57 -5.76 16 2 C -0.11 -2.82 12.90 -37.12 -0.48 -3.30 16 3 C 0.21 5.20 5.11 -6.83 -0.03 5.16 16 4 N -0.43 -11.03 2.61 -117.94 -0.31 -11.34 16 5 C -0.33 -8.30 8.85 -14.93 -0.13 -8.43 16 6 H 0.11 2.66 5.54 -52.49 -0.29 2.37 16 7 C 0.04 0.88 4.99 -17.47 -0.09 0.79 16 8 N -0.85 -21.64 9.82 55.50 0.55 -21.10 16 9 Si 0.91 18.90 29.65 -169.99 -5.04 13.86 16 10 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 11 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 13 C 0.49 12.32 6.95 -10.98 -0.08 12.24 16 14 O -0.60 -16.64 16.78 5.54 0.09 -16.55 16 15 C -0.13 -2.59 1.49 -154.54 -0.23 -2.82 16 16 C -0.13 -2.30 7.82 -26.73 -0.21 -2.51 16 17 C -0.15 -2.67 6.81 -89.50 -0.61 -3.28 16 18 H 0.11 1.89 8.14 -51.93 -0.42 1.47 16 19 C -0.09 -1.28 6.63 -25.07 -0.17 -1.45 16 20 C -0.12 -1.82 6.96 -23.54 -0.16 -1.98 16 21 C -0.07 -1.33 6.59 -23.88 -0.16 -1.49 16 22 H 0.20 3.67 7.80 -54.09 -0.42 3.24 16 23 H 0.15 3.70 5.09 -51.93 -0.26 3.44 16 24 H 0.06 1.55 7.60 -51.93 -0.39 1.16 16 25 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 26 H 0.10 1.89 8.08 -51.93 -0.42 1.47 16 27 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 33 H 0.07 1.37 8.00 -51.93 -0.42 0.96 16 LS Contribution 281.96 15.07 4.25 4.25 Total: -1.00 -29.35 281.96 -6.54 -35.88 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -4.30 Total: 7.83 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -1.78 Total: -12.83 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: 0.24 Total: -32.44 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: 0.09 Total: -16.55 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.04 Total: 13.86 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.35 -6.54 -35.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491425787.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.463 kcal (2) G-P(sol) polarization free energy of solvation -29.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds