Wall clock time and date at job start Thu Apr 9 2020 12:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46493 * 109.46981 * 261.30371 * 3 2 1 5 5 C 1.37105 * 120.00201 * 262.74413 * 4 3 2 6 6 H 1.07991 * 120.00127 * 176.17838 * 5 4 3 7 7 C 1.38942 * 119.99651 * 356.17557 * 5 4 3 8 8 N 1.31413 * 120.00027 * 30.92786 * 7 5 4 9 9 Si 1.86799 * 120.00205 * 210.92728 * 7 5 4 10 10 H 1.48497 * 109.47245 * 89.99785 * 9 7 5 11 11 H 1.48504 * 109.47201 * 210.00599 * 9 7 5 12 12 H 1.48507 * 109.46789 * 329.99910 * 9 7 5 13 13 C 1.34784 * 120.00310 * 82.74389 * 4 3 2 14 14 O 1.21298 * 119.99579 * 3.21660 * 13 4 3 15 15 C 1.50699 * 120.00364 * 182.94097 * 13 4 3 16 16 C 1.53002 * 119.29389 * 299.99695 * 15 13 4 17 17 C 1.53004 * 60.37630 * 248.69012 * 16 15 13 18 18 H 1.08997 * 119.29603 * 111.30495 * 17 16 15 19 19 C 1.54260 * 118.20180 * 266.38364 * 17 16 15 20 20 C 1.54895 * 104.19400 * 87.78756 * 19 17 16 21 21 C 1.54263 * 117.41102 * 94.33573 * 15 13 4 22 22 H 4.40638 * 5.51391 * 179.97438 * 4 1 2 23 23 H 1.09001 * 109.46980 * 141.30535 * 3 2 1 24 24 H 1.08999 * 109.47247 * 21.30270 * 3 2 1 25 25 H 0.97004 * 119.99943 * 180.02562 * 8 7 5 26 26 H 1.08992 * 117.46412 * 356.28842 * 16 15 13 27 27 H 1.09002 * 117.46145 * 141.09734 * 16 15 13 28 28 H 1.08997 * 110.49232 * 206.46565 * 19 17 16 29 29 H 1.09000 * 110.48841 * 329.11434 * 19 17 16 30 30 H 1.09005 * 110.75237 * 80.37614 * 20 19 17 31 31 H 1.09006 * 110.75379 * 203.55655 * 20 19 17 32 32 H 1.09008 * 110.48664 * 235.04910 * 21 15 13 33 33 H 1.08993 * 110.49089 * 357.68874 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.2097 1.3653 5 6 3.5035 1.4643 1.7767 6 1 3.8046 1.6300 2.8005 7 6 3.4905 2.5225 0.8764 8 7 2.6205 2.5366 -0.1084 9 14 4.7095 3.9252 1.0659 10 1 5.9440 3.6148 0.3012 11 1 4.1067 5.1786 0.5454 12 1 5.0468 4.0973 2.5019 13 6 3.2203 -0.8313 2.2171 14 8 2.9493 -1.9506 1.8361 15 6 3.6593 -0.6057 3.6409 16 6 5.0405 -0.0060 3.9124 17 6 4.7628 -1.4641 4.2836 18 1 5.2582 -2.2597 3.7272 19 6 4.2984 -1.7746 5.7215 20 6 2.7572 -1.6309 5.6622 21 6 2.5565 -0.4055 4.7008 22 1 -1.0500 0.0002 -0.0001 23 1 3.0090 0.8029 -0.6425 24 1 3.0098 -0.9566 -0.3733 25 1 2.6116 3.2752 -0.7372 26 1 5.6853 0.1800 3.0536 27 1 5.1250 0.7128 4.7275 28 1 4.5763 -2.7907 6.0012 29 1 4.7218 -1.0555 6.4228 30 1 2.3014 -2.5291 5.2454 31 1 2.3510 -1.4164 6.6507 32 1 2.7111 0.5288 5.2406 33 1 1.5717 -0.4189 4.2340 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491425787.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:31 Heat of formation + Delta-G solvation = 42.704508 kcal Electronic energy + Delta-G solvation = -16624.589231 eV Core-core repulsion = 14038.580126 eV Total energy + Delta-G solvation = -2586.009105 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.29125 -39.09619 -36.94852 -33.98108 -33.33703 -32.30616 -29.56209 -28.28062 -26.62851 -23.81506 -22.58106 -21.22813 -20.50458 -19.35188 -18.36495 -17.60209 -16.55163 -16.28906 -16.12761 -15.53827 -15.40380 -14.30789 -14.23580 -14.01794 -13.86826 -13.73204 -13.47171 -12.82094 -12.59038 -12.45249 -12.06824 -11.99408 -11.85404 -11.74635 -11.41399 -11.19750 -11.07269 -10.75368 -10.42474 -10.12623 -9.91579 -8.34872 -5.79268 1.40442 1.50633 1.61184 1.79676 2.02620 2.20441 2.33283 2.70607 3.02110 3.16995 3.67906 3.80355 3.88522 3.96245 4.25210 4.34182 4.55569 4.57581 4.70832 4.74771 4.85973 4.96368 5.01939 5.09912 5.17587 5.22308 5.23823 5.30055 5.42233 5.51916 5.57844 5.72502 6.43852 6.92799 7.10370 7.56352 7.97123 8.65738 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.021901 B = 0.011027 C = 0.008283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.195637 B = 2538.707557 C = 3379.658272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.170 4.170 3 C 0.205 3.795 4 N -0.440 5.440 5 C -0.352 4.352 6 H 0.123 0.877 7 C -0.004 4.004 8 N -0.876 5.876 9 Si 0.981 3.019 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.253 1.253 13 C 0.476 3.524 14 O -0.645 6.645 15 C -0.162 4.162 16 C -0.116 4.116 17 C -0.142 4.142 18 H 0.093 0.907 19 C -0.081 4.081 20 C -0.114 4.114 21 C -0.073 4.073 22 H 0.245 0.755 23 H 0.139 0.861 24 H 0.052 0.948 25 H 0.272 0.728 26 H 0.089 0.911 27 H 0.118 0.882 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.050 0.950 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.442 -0.467 8.937 9.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.171 4.171 3 C 0.083 3.917 4 N -0.155 5.155 5 C -0.478 4.478 6 H 0.140 0.860 7 C -0.206 4.206 8 N -0.515 5.515 9 Si 0.805 3.195 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.177 1.177 13 C 0.266 3.734 14 O -0.534 6.534 15 C -0.165 4.165 16 C -0.153 4.153 17 C -0.161 4.161 18 H 0.111 0.889 19 C -0.118 4.118 20 C -0.151 4.151 21 C -0.111 4.111 22 H 0.261 0.739 23 H 0.156 0.844 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.108 0.892 27 H 0.137 0.863 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.263 -0.855 8.575 9.215 hybrid contribution -0.153 0.607 -0.894 1.091 sum 3.110 -0.248 7.681 8.290 Atomic orbital electron populations 1.25385 0.96524 1.04352 1.00470 1.23993 0.95615 0.97417 1.00076 1.18961 0.84467 1.01309 0.86987 1.44103 1.53820 1.08087 1.09517 1.20195 1.43854 0.84373 0.99338 0.85958 1.26084 0.97308 1.01303 0.95877 1.70210 1.30412 1.32907 1.17929 0.85104 0.78348 0.76397 0.79677 1.20037 1.21376 1.17651 1.19837 0.82599 0.83724 0.87191 1.90469 1.58469 1.25376 1.79108 1.21981 0.92642 1.10042 0.91866 1.23120 0.94602 0.94918 1.02702 1.23537 1.00541 0.94269 0.97767 0.88877 1.21934 0.94357 1.02885 0.92661 1.23013 0.96546 0.96413 0.99171 1.22149 0.95007 0.99941 0.94006 0.73897 0.84442 0.93045 0.91758 0.89238 0.86342 0.89819 0.88877 0.93064 0.88523 0.89434 0.94423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -11.32 19.25 74.32 1.43 -9.89 16 2 C -0.17 -8.84 12.90 31.12 0.40 -8.44 16 3 C 0.21 10.87 5.11 84.58 0.43 11.31 16 4 N -0.44 -23.22 2.61 -645.43 -1.69 -24.91 16 5 C -0.35 -17.63 8.85 84.04 0.74 -16.89 16 6 H 0.12 5.73 5.54 -2.92 -0.02 5.71 16 7 C 0.00 -0.18 4.99 84.92 0.42 0.25 16 8 N -0.88 -45.25 9.82 21.66 0.21 -45.04 16 9 Si 0.98 38.17 29.65 68.60 2.03 40.20 16 10 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 11 H -0.29 -11.24 7.11 99.48 0.71 -10.54 16 12 H -0.25 -9.18 7.11 99.48 0.71 -8.47 16 13 C 0.48 24.62 6.95 87.66 0.61 25.23 16 14 O -0.64 -37.40 16.78 -3.08 -0.05 -37.45 16 15 C -0.16 -6.56 1.49 -52.20 -0.08 -6.64 16 16 C -0.12 -3.91 7.82 30.60 0.24 -3.67 16 17 C -0.14 -4.71 6.81 -10.07 -0.07 -4.78 16 18 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 19 C -0.08 -2.00 6.63 31.67 0.21 -1.79 16 20 C -0.11 -3.13 6.96 32.66 0.23 -2.90 16 21 C -0.07 -2.56 6.59 32.44 0.21 -2.34 16 22 H 0.24 8.32 7.80 -4.42 -0.03 8.29 16 23 H 0.14 7.40 5.09 -2.39 -0.01 7.39 16 24 H 0.05 2.73 7.60 -2.39 -0.02 2.72 16 25 H 0.27 13.24 8.31 -92.71 -0.77 12.47 16 26 H 0.09 3.22 8.08 -2.39 -0.02 3.20 16 27 H 0.12 3.25 8.14 -2.39 -0.02 3.24 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.10 2.01 8.14 -2.38 -0.02 2.00 16 32 H 0.09 2.66 8.14 -2.38 -0.02 2.64 16 33 H 0.04 1.51 8.00 -2.39 -0.02 1.49 16 Total: -1.00 -65.49 281.96 6.39 -59.10 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: 1.10 Total: 28.66 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: 4.79 Total: -20.56 kcal Atomic # 7 Polarization: -68.48 SS G_CDS: -1.47 Total: -69.95 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -0.05 Total: -37.45 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Total: -65.49 6.39 -59.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491425787.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.801 kcal (2) G-P(sol) polarization free energy of solvation -65.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds