Wall clock time and date at job start Thu Apr 9 2020 12:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.45510 * 2 1 4 4 C 1.53045 * 109.45796 * 240.03384 * 2 1 3 5 5 C 1.53127 * 109.27578 * 180.80204 * 4 2 1 6 6 F 1.39896 * 109.51658 * 177.55780 * 5 4 2 7 7 F 1.39903 * 109.52139 * 297.68433 * 5 4 2 8 8 C 1.53091 * 109.15511 * 57.65482 * 5 4 2 9 9 C 1.53041 * 109.29206 * 302.33884 * 8 5 4 10 10 N 1.46838 * 109.46605 * 119.98068 * 2 1 3 11 11 C 1.46898 * 111.00113 * 305.85048 * 10 2 1 12 12 C 1.53002 * 109.47263 * 164.84110 * 11 10 2 13 13 C 1.50698 * 109.47049 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00236 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99885 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00220 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00071 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47201 * 89.99901 * 17 15 13 19 19 H 1.48498 * 109.47491 * 209.99926 * 17 15 13 20 20 H 1.48504 * 109.47062 * 330.00021 * 17 15 13 21 21 H 1.09010 * 109.46558 * 307.26421 * 1 2 3 22 22 H 1.08991 * 109.47816 * 67.26143 * 1 2 3 23 23 H 1.09000 * 109.47066 * 187.26544 * 1 2 3 24 24 H 1.08993 * 109.50344 * 300.74086 * 4 2 1 25 25 H 1.09002 * 109.50010 * 60.82433 * 4 2 1 26 26 H 1.08993 * 109.48888 * 182.39814 * 8 5 4 27 27 H 1.08999 * 109.50562 * 62.28469 * 8 5 4 28 28 H 1.09009 * 109.45791 * 299.17638 * 9 8 5 29 29 H 1.09000 * 109.46369 * 179.19894 * 9 8 5 30 30 H 1.08996 * 109.47058 * 284.84420 * 11 10 2 31 31 H 1.08997 * 109.46775 * 44.83929 * 11 10 2 32 32 H 1.08996 * 109.47336 * 300.00139 * 12 11 10 33 33 H 1.08999 * 109.46994 * 60.00565 * 12 11 10 34 34 H 0.96996 * 120.00243 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2501 5 6 3.5709 -0.7359 -1.2359 6 9 4.0417 -1.4421 -2.3480 7 9 4.0518 0.5772 -1.2778 8 6 4.0546 -1.4187 0.0462 9 6 3.4866 -0.6778 1.2588 10 7 2.0193 -0.6918 1.1992 11 6 1.4375 -0.1108 2.4165 12 6 1.6559 -1.0654 3.5920 13 6 1.0584 -0.4695 4.8406 14 1 0.5712 0.4935 4.7998 15 6 1.1337 -1.1538 6.0352 16 7 1.7265 -2.3267 6.0850 17 14 0.3938 -0.4149 7.5832 18 1 -1.0212 -0.8471 7.7104 19 1 1.1609 -0.8768 8.7678 20 1 0.4534 1.0667 7.5018 21 1 -0.3633 0.6223 0.8180 22 1 -0.3634 0.3972 -0.9477 23 1 -0.3633 -1.0194 0.1300 24 1 1.6658 -1.7445 -1.2579 25 1 1.6887 -0.1983 -2.1400 26 1 5.1437 -1.3946 0.0823 27 1 3.7123 -2.4535 0.0588 28 1 3.8404 0.3532 1.2530 29 1 3.8177 -1.1702 2.1731 30 1 1.9187 0.8438 2.6293 31 1 0.3689 0.0459 2.2693 32 1 1.1747 -2.0199 3.3792 33 1 2.7245 -1.2219 3.7392 34 1 1.7798 -2.8079 6.9255 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528766130.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:41 Heat of formation + Delta-G solvation = -114.540929 kcal Electronic energy + Delta-G solvation = -17153.454965 eV Core-core repulsion = 14142.230751 eV Total energy + Delta-G solvation = -3011.224214 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.129 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.89376 -46.89562 -38.71000 -33.81559 -32.55878 -32.15249 -28.99062 -27.18899 -24.87187 -23.33675 -21.65028 -20.42308 -19.58509 -17.15127 -16.79439 -16.29754 -16.23130 -15.40053 -14.78573 -14.39462 -13.90932 -13.69595 -13.44946 -13.24842 -13.00669 -12.68023 -12.21441 -12.08371 -11.90250 -11.81079 -11.62250 -11.23053 -11.00626 -10.95477 -10.61561 -10.51234 -10.33238 -9.75613 -9.40082 -9.13489 -8.34901 -7.84050 -6.01734 -4.04264 3.30757 3.37216 3.40034 3.81462 4.14252 4.17347 4.42978 4.45970 4.58775 4.98775 5.26629 5.34319 5.36543 5.46193 5.50797 5.59984 5.69477 5.81027 5.95270 6.01438 6.13799 6.18685 6.30598 6.37849 6.49142 6.94847 7.39521 7.47306 7.74792 7.86319 8.05073 8.40735 9.03010 9.59667 11.09562 Molecular weight = 233.13amu Principal moments of inertia in cm(-1) A = 0.046079 B = 0.005739 C = 0.005424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.506381 B = 4877.888895 C = 5160.566861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.080 3.920 3 H 0.043 0.957 4 C -0.147 4.147 5 C 0.284 3.716 6 F -0.207 7.207 7 F -0.204 7.204 8 C -0.152 4.152 9 C 0.055 3.945 10 N -0.535 5.535 11 C 0.058 3.942 12 C 0.030 3.970 13 C -0.523 4.523 14 H 0.054 0.946 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.065 0.935 22 H 0.055 0.945 23 H 0.069 0.931 24 H 0.101 0.899 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.102 0.898 28 H 0.036 0.964 29 H 0.100 0.900 30 H 0.022 0.978 31 H 0.071 0.929 32 H 0.025 0.975 33 H 0.016 0.984 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.656 2.925 -13.770 14.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.029 4.029 3 H 0.061 0.939 4 C -0.185 4.185 5 C 0.248 3.752 6 F -0.188 7.188 7 F -0.185 7.185 8 C -0.191 4.191 9 C -0.073 4.073 10 N -0.260 5.260 11 C -0.068 4.068 12 C -0.008 4.008 13 C -0.562 4.562 14 H 0.072 0.928 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.719 3.281 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.084 0.916 22 H 0.074 0.926 23 H 0.088 0.912 24 H 0.120 0.880 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.121 0.879 28 H 0.055 0.945 29 H 0.118 0.882 30 H 0.040 0.960 31 H 0.089 0.911 32 H 0.043 0.957 33 H 0.034 0.966 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.574 2.319 -13.707 13.991 hybrid contribution 0.063 1.220 0.802 1.461 sum 1.637 3.539 -12.905 13.481 Atomic orbital electron populations 1.21883 0.93518 1.03318 1.01520 1.21504 0.96282 0.95372 0.89750 0.93888 1.22633 0.91095 1.04893 0.99899 1.21287 0.93857 0.75149 0.84940 1.92981 1.90470 1.78860 1.56448 1.92976 1.90089 1.38526 1.96893 1.22603 1.02093 1.02156 0.92224 1.22055 0.88446 0.98841 0.97945 1.62154 1.06087 1.55140 1.02623 1.22463 0.98590 0.96940 0.88841 1.19074 0.97143 0.94624 0.89921 1.21185 1.36895 1.04592 0.93482 0.92818 1.24985 0.95391 0.94894 0.98981 1.69965 1.43454 1.13406 1.26380 0.86605 0.79200 0.79409 0.82838 1.20635 1.21232 1.19939 0.91592 0.92591 0.91229 0.87999 0.89720 0.89529 0.87942 0.94536 0.88191 0.96013 0.91101 0.95676 0.96615 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.57 37.16 0.32 -1.56 16 2 C 0.08 1.15 2.33 -67.72 -0.16 0.99 16 3 H 0.04 0.65 7.88 -51.93 -0.41 0.24 16 4 C -0.15 -1.85 4.89 -26.64 -0.13 -1.98 16 5 C 0.28 3.88 2.12 -26.62 -0.06 3.82 16 6 F -0.21 -2.89 17.07 2.25 0.04 -2.85 16 7 F -0.20 -3.05 16.23 2.25 0.04 -3.01 16 8 C -0.15 -2.07 5.62 -26.66 -0.15 -2.22 16 9 C 0.06 0.89 5.19 -3.83 -0.02 0.87 16 10 N -0.53 -9.21 4.45 -226.68 -1.01 -10.22 16 11 C 0.06 1.17 4.70 -3.82 -0.02 1.15 16 12 C 0.03 0.75 5.01 -27.88 -0.14 0.61 16 13 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 14 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.49 13.29 55.43 0.74 -25.76 16 17 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 H 0.07 0.90 6.45 -51.92 -0.33 0.57 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 28 H 0.04 0.59 7.88 -51.92 -0.41 0.18 16 29 H 0.10 1.77 6.45 -51.93 -0.34 1.43 16 30 H 0.02 0.45 8.07 -51.93 -0.42 0.03 16 31 H 0.07 1.39 5.58 -51.93 -0.29 1.10 16 32 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.02 0.42 6.62 -51.93 -0.34 0.07 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 276.85 15.07 4.17 4.17 Total: -1.00 -29.29 276.85 -6.85 -36.14 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -5.04 Total: -3.27 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -0.76 Total: -11.56 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: -0.27 Total: -35.98 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 0.07 Total: -5.87 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.29 -6.85 -36.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528766130.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.401 kcal (2) G-P(sol) polarization free energy of solvation -29.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds