Wall clock time and date at job start Thu Apr 9 2020 12:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30593 * 1 3 3 Si 1.86806 * 120.00207 * 2 1 4 4 H 1.48494 * 109.47090 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46992 * 300.00379 * 3 2 1 6 6 H 1.48502 * 109.47055 * 59.99789 * 3 2 1 7 7 C 1.40208 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00249 * 179.97438 * 7 2 1 9 9 C 1.40755 * 119.99826 * 0.02562 * 7 2 1 10 10 O 1.21968 * 119.99902 * 359.97438 * 9 7 2 11 11 N 1.34778 * 119.99891 * 179.97438 * 9 7 2 12 12 N 1.40101 * 119.99958 * 179.97438 * 11 9 7 13 13 C 1.30688 * 119.99908 * 180.02562 * 12 11 9 14 14 C 1.46724 * 119.99622 * 179.97438 * 13 12 11 15 15 C 1.40135 * 120.22943 * 179.97438 * 14 13 12 16 16 C 1.37646 * 119.86492 * 179.72448 * 15 14 13 17 17 C 1.38717 * 120.34927 * 0.02562 * 16 15 14 18 18 C 1.38172 * 120.47559 * 0.02562 * 17 16 15 19 19 C 1.38549 * 120.12170 * 359.97438 * 18 17 16 20 20 O 1.35672 * 120.17380 * 180.02562 * 19 18 17 21 21 H 0.97006 * 120.00100 * 359.97438 * 1 2 3 22 22 H 0.97002 * 120.00123 * 359.97438 * 11 9 7 23 23 H 1.07999 * 120.00239 * 359.97438 * 13 12 11 24 24 H 1.07996 * 120.06491 * 359.74911 * 15 14 13 25 25 H 1.08000 * 119.82528 * 179.97438 * 16 15 14 26 26 H 1.07997 * 119.76336 * 179.97438 * 17 16 15 27 27 H 1.08000 * 119.94085 * 180.02562 * 18 17 16 28 28 H 0.96698 * 114.00466 * 269.98194 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 3.6999 1.3463 -0.0006 5 1 1.8812 2.3965 -1.2125 6 1 1.8812 2.3965 1.2125 7 6 2.0070 -1.2142 -0.0005 8 1 3.0870 -1.2143 -0.0010 9 6 1.3032 -2.4332 -0.0016 10 8 0.0835 -2.4332 -0.0016 11 7 1.9771 -3.6004 -0.0027 12 7 1.2766 -4.8137 -0.0032 13 6 1.9300 -5.9455 -0.0037 14 6 1.1964 -7.2161 -0.0037 15 6 1.8921 -8.4326 -0.0048 16 6 1.1963 -9.6202 0.0009 17 6 -0.1909 -9.6197 0.0073 18 6 -0.8913 -8.4287 0.0074 19 6 -0.2107 -7.2219 0.0016 20 8 -0.8974 -6.0517 0.0022 21 1 -0.4850 0.8401 0.0004 22 1 2.9471 -3.6004 -0.0031 23 1 3.0100 -5.9455 -0.0041 24 1 2.9720 -8.4382 -0.0097 25 1 1.7331 -10.5573 -0.0003 26 1 -0.7273 -10.5570 0.0113 27 1 -1.9712 -8.4384 0.0127 28 1 -1.1003 -5.7142 -0.8809 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000143686.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:51 Heat of formation + Delta-G solvation = -8.946713 kcal Electronic energy + Delta-G solvation = -15276.441928 eV Core-core repulsion = 12486.934052 eV Total energy + Delta-G solvation = -2789.507876 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.39862 -37.52981 -36.14250 -35.11504 -32.68955 -31.78283 -29.99457 -28.93029 -26.52190 -23.44027 -22.30169 -20.64996 -19.71205 -17.95025 -17.41691 -16.35125 -15.87319 -15.49673 -14.91109 -14.55873 -14.07107 -13.74602 -13.17907 -13.14639 -12.65859 -12.26348 -11.80953 -11.48548 -11.34926 -11.31263 -10.88658 -10.65661 -10.35305 -10.23058 -9.27336 -9.12923 -8.83951 -8.49354 -7.73621 -7.22638 -6.39208 -4.94231 1.11754 1.47734 2.90358 3.05355 3.11011 3.16103 3.73452 3.96700 4.09980 4.45680 4.62894 4.98833 5.06974 5.16637 5.37999 5.59713 5.77761 5.86398 6.03335 6.14589 6.32334 6.55699 6.64503 6.81149 6.99583 7.21296 7.84477 7.99714 8.23183 8.70669 8.77252 9.30808 10.39755 10.66242 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.067605 B = 0.004974 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.072833 B = 5627.566826 C = 6029.222695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.088 3.912 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.071 0.929 9 C 0.557 3.443 10 O -0.549 6.549 11 N -0.590 5.590 12 N -0.159 5.159 13 C 0.003 3.997 14 C -0.049 4.049 15 C -0.095 4.095 16 C -0.136 4.136 17 C -0.111 4.111 18 C -0.152 4.152 19 C 0.133 3.867 20 O -0.468 6.468 21 H 0.274 0.726 22 H 0.367 0.633 23 H 0.105 0.895 24 H 0.126 0.874 25 H 0.121 0.879 26 H 0.121 0.879 27 H 0.126 0.874 28 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.954 -13.849 -1.675 14.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.136 4.136 3 Si 0.740 3.260 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.089 0.911 9 C 0.365 3.635 10 O -0.428 6.428 11 N -0.336 5.336 12 N 0.030 4.970 13 C -0.205 4.205 14 C -0.052 4.052 15 C -0.116 4.116 16 C -0.154 4.154 17 C -0.130 4.130 18 C -0.171 4.171 19 C 0.084 3.916 20 O -0.279 6.279 21 H 0.085 0.915 22 H 0.202 0.798 23 H 0.122 0.878 24 H 0.144 0.856 25 H 0.139 0.861 26 H 0.139 0.861 27 H 0.144 0.856 28 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 2.073 -13.104 -1.073 13.311 hybrid contribution 1.888 0.587 -0.441 2.026 sum 3.961 -12.518 -1.513 13.216 Atomic orbital electron populations 1.70019 1.07332 1.27919 1.31867 1.25766 0.94680 1.00675 0.92459 0.86171 0.80436 0.80877 0.78490 1.18547 1.19850 1.19835 1.19801 0.94448 0.89654 1.53473 0.91120 1.16816 0.87902 0.80327 0.78421 1.90728 1.13310 1.85237 1.53488 1.48234 1.07409 1.02222 1.75758 1.75099 1.26844 0.92607 1.02477 1.23861 0.96417 0.90756 1.09498 1.19043 0.92380 0.91765 1.01998 1.21090 0.99635 0.90897 0.99954 1.20939 0.94220 0.97676 1.02599 1.21052 0.94210 0.97397 1.00339 1.21415 1.00435 0.91914 1.03305 1.18852 0.89118 0.86185 0.97398 1.84846 1.74498 1.35341 1.33176 0.91537 0.79790 0.87756 0.85641 0.86054 0.86140 0.85590 0.74988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.85 11.71 55.56 0.65 -21.20 15 2 C 0.09 2.39 5.50 -17.34 -0.10 2.29 15 3 Si 0.92 19.44 29.56 -169.99 -5.02 14.42 15 4 H -0.26 -5.34 7.11 56.52 0.40 -4.93 15 5 H -0.27 -5.66 7.11 56.52 0.40 -5.26 15 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 7 C -0.54 -14.95 9.26 -37.89 -0.35 -15.30 15 8 H 0.07 1.77 7.85 -52.49 -0.41 1.36 15 9 C 0.56 16.30 7.66 -15.31 -0.12 16.18 15 10 O -0.55 -18.32 15.20 4.95 0.08 -18.25 15 11 N -0.59 -14.31 6.26 28.94 0.18 -14.13 15 12 N -0.16 -3.64 8.93 32.12 0.29 -3.35 15 13 C 0.00 0.05 10.76 -14.61 -0.16 -0.11 15 14 C -0.05 -0.79 5.89 -104.83 -0.62 -1.41 15 15 C -0.09 -1.18 9.80 -39.09 -0.38 -1.57 15 16 C -0.14 -1.49 10.02 -39.62 -0.40 -1.88 15 17 C -0.11 -1.25 10.04 -39.43 -0.40 -1.64 15 18 C -0.15 -2.06 9.97 -39.49 -0.39 -2.45 15 19 C 0.13 2.21 6.73 -38.53 -0.26 1.95 15 20 O -0.47 -9.06 11.38 -18.72 -0.21 -9.27 15 21 H 0.27 7.17 8.29 -40.82 -0.34 6.83 15 22 H 0.37 7.51 8.62 -182.59 -1.57 5.94 15 23 H 0.11 1.57 8.03 -52.49 -0.42 1.15 15 24 H 0.13 1.25 8.06 -52.49 -0.42 0.82 15 25 H 0.12 0.97 8.06 -52.49 -0.42 0.55 15 26 H 0.12 1.02 8.06 -52.49 -0.42 0.60 15 27 H 0.13 1.51 8.06 -52.49 -0.42 1.08 15 28 H 0.39 6.64 9.06 45.56 0.41 7.06 15 LS Contribution 264.06 15.07 3.98 3.98 Total: -1.00 -35.76 264.06 -6.05 -41.81 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -2.82 Total: 9.92 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -3.17 Total: -3.93 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 1.12 Total: -38.68 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.14 Total: -27.52 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -35.76 -6.05 -41.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000143686.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.868 kcal (2) G-P(sol) polarization free energy of solvation -35.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds