Wall clock time and date at job start Thu Apr 9 2020 12:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52997 * 109.47229 * 89.99423 * 6 5 4 8 8 N 1.46900 * 109.47426 * 180.02562 * 7 6 5 9 9 C 1.46902 * 111.00303 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.46813 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.46598 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00382 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99891 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99696 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00257 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47275 * 89.99482 * 15 13 11 17 17 H 1.48500 * 109.47382 * 209.99810 * 15 13 11 18 18 H 1.48500 * 109.46884 * 329.99765 * 15 13 11 19 19 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 20 20 C 1.38234 * 120.00033 * 0.49775 * 19 5 4 21 21 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 22 22 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 23 23 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 24 24 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 25 25 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 26 26 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 27 27 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 28 28 H 1.09004 * 109.47454 * 300.00132 * 7 6 5 29 29 H 1.09006 * 109.47180 * 60.00059 * 7 6 5 30 30 H 1.00900 * 110.99993 * 303.95602 * 8 7 6 31 31 H 1.08993 * 109.46918 * 299.99785 * 9 8 7 32 32 H 1.08995 * 109.47026 * 60.00418 * 9 8 7 33 33 H 1.09000 * 109.47255 * 299.99277 * 10 9 8 34 34 H 1.08994 * 109.47785 * 60.00076 * 10 9 8 35 35 H 0.96996 * 119.99719 * 180.02562 * 14 13 11 36 36 H 1.07999 * 119.99934 * 180.25938 * 19 5 4 37 37 H 1.08001 * 120.00294 * 179.76453 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2941 -0.0027 1.4304 8 7 7.7631 -0.0021 1.4249 9 6 8.2948 -0.0053 2.7943 10 6 9.8241 -0.0039 2.7476 11 6 10.3694 -0.0078 4.1525 12 1 9.6930 -0.0105 4.9943 13 6 11.7321 -0.0079 4.3630 14 7 12.5559 -0.0051 3.3378 15 14 12.4082 -0.0120 6.1043 16 1 12.5877 -1.4132 6.5624 17 1 13.7175 0.6883 6.1287 18 1 11.4568 0.6856 7.0063 19 6 3.5805 -1.1972 0.0010 20 6 2.1982 -1.1972 0.0009 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5139 24 1 1.6582 2.1324 -0.0004 25 1 4.1205 2.1325 0.0001 26 1 6.1400 -0.8891 -0.5270 27 1 6.1401 0.8909 -0.5236 28 1 5.9328 0.8863 1.9473 29 1 5.9327 -0.8937 1.9440 30 1 8.1231 -0.7823 0.8958 31 1 7.9470 0.8832 3.3211 32 1 7.9477 -0.8967 3.3167 33 1 10.1723 -0.8923 2.2207 34 1 10.1709 0.8876 2.2253 35 1 13.5144 -0.0056 3.4859 36 1 4.1205 -2.1325 0.0013 37 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258910302.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:16 Heat of formation + Delta-G solvation = -4.354087 kcal Electronic energy + Delta-G solvation = -15034.383563 eV Core-core repulsion = 12582.166939 eV Total energy + Delta-G solvation = -2452.216624 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.56840 -36.37444 -34.07364 -32.75934 -31.00458 -30.59974 -28.46894 -25.82935 -23.81110 -22.80010 -21.97851 -20.80606 -20.25343 -16.36118 -16.09705 -15.86163 -15.20805 -15.11483 -14.46327 -14.04640 -13.85203 -13.56560 -13.44878 -13.08600 -12.60983 -12.43039 -12.25787 -12.03782 -11.44915 -11.25746 -11.08280 -11.04278 -10.91139 -10.74721 -10.50634 -9.95681 -9.38221 -9.13698 -9.00631 -8.52659 -8.33887 -7.80395 -5.98412 -4.00910 1.24342 1.32260 3.33048 3.39093 3.42769 3.64721 4.44054 4.60736 4.68918 4.76704 4.93352 5.04260 5.18126 5.32299 5.35029 5.37467 5.42797 5.47955 5.59048 5.60881 5.76934 5.91239 6.02930 6.12137 6.23546 6.34182 6.37702 6.44613 6.48132 6.64110 6.94255 6.99901 7.49531 7.74637 7.84608 7.98177 8.10244 8.45361 9.06417 9.62729 11.13102 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.061515 B = 0.003268 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.065646 B = 8565.767836 C = 8693.150996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.098 4.098 3 C -0.120 4.120 4 C -0.112 4.112 5 C -0.078 4.078 6 C -0.080 4.080 7 C 0.065 3.935 8 N -0.693 5.693 9 C 0.066 3.934 10 C 0.025 3.975 11 C -0.522 4.522 12 H 0.054 0.946 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.114 4.114 20 C -0.120 4.120 21 H 0.067 0.933 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.119 0.881 25 H 0.123 0.877 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.023 0.977 30 H 0.335 0.665 31 H 0.058 0.942 32 H 0.015 0.985 33 H 0.014 0.986 34 H 0.025 0.975 35 H 0.260 0.740 36 H 0.121 0.879 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.693 -0.731 -8.183 23.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.098 4.098 3 C -0.138 4.138 4 C -0.130 4.130 5 C -0.079 4.079 6 C -0.118 4.118 7 C -0.064 4.064 8 N -0.324 5.324 9 C -0.062 4.062 10 C -0.012 4.012 11 C -0.561 4.561 12 H 0.072 0.928 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.132 4.132 20 C -0.138 4.138 21 H 0.086 0.914 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.137 0.863 25 H 0.141 0.859 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.152 0.848 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.139 0.861 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.455 -0.036 -8.281 22.998 hybrid contribution 0.290 -0.956 1.245 1.597 sum -21.166 -0.993 -7.036 22.327 Atomic orbital electron populations 1.20768 0.91452 1.02613 1.02093 1.19894 0.95920 0.93326 1.00673 1.21014 0.94220 0.97400 1.01161 1.21101 0.94042 0.97875 0.99971 1.19947 0.95915 0.93090 0.98935 1.20622 0.89858 1.03471 0.97867 1.21880 0.89383 1.00266 0.94893 1.60604 1.05250 1.49783 1.16744 1.22156 0.99133 0.98627 0.86324 1.19072 0.87537 0.97724 0.96915 1.21190 0.91596 1.50823 0.92450 0.92763 1.25011 0.97150 0.95315 0.96936 1.69976 1.02809 1.50696 1.29811 0.86579 0.78397 0.78054 0.84875 1.20706 1.21175 1.19874 1.21075 0.94087 0.97762 1.00307 1.20998 0.94187 0.97398 1.01253 0.91400 0.91712 0.91682 0.86268 0.85867 0.91191 0.90079 0.91406 0.95898 0.84753 0.92384 0.96697 0.96809 0.95621 0.92991 0.86137 0.86330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.01 0.36 -0.45 16 2 C -0.10 -0.97 5.88 -104.62 -0.62 -1.59 16 3 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 4 C -0.11 -1.27 9.70 -39.58 -0.38 -1.65 16 5 C -0.08 -0.94 5.13 -104.63 -0.54 -1.47 16 6 C -0.08 -1.01 5.60 -27.89 -0.16 -1.17 16 7 C 0.07 0.99 5.67 -3.83 -0.02 0.97 16 8 N -0.69 -12.71 6.50 -113.78 -0.74 -13.45 16 9 C 0.07 1.43 5.62 -3.82 -0.02 1.41 16 10 C 0.02 0.66 5.23 -27.88 -0.15 0.52 16 11 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 12 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -27.27 13.29 55.43 0.74 -26.54 16 15 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 C -0.11 -1.28 9.70 -39.58 -0.38 -1.67 16 20 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 21 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 22 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 23 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 24 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 25 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 26 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 27 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.34 5.86 8.73 -39.29 -0.34 5.51 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 313.53 15.07 4.72 4.72 Total: -1.00 -30.94 313.53 -9.60 -40.54 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.21 Total: 0.00 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -3.08 Total: -22.17 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.00 Total: -39.99 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.94 -9.60 -40.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258910302.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.182 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds