Wall clock time and date at job start Thu Apr 9 2020 12:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52997 * 109.47229 * 89.99423 * 6 5 4 8 8 N 1.46900 * 109.47426 * 180.02562 * 7 6 5 9 9 C 1.46902 * 111.00303 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.46813 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.46598 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00382 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99891 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99696 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00257 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47275 * 89.99482 * 15 13 11 17 17 H 1.48500 * 109.47382 * 209.99810 * 15 13 11 18 18 H 1.48500 * 109.46884 * 329.99765 * 15 13 11 19 19 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 20 20 C 1.38234 * 120.00033 * 0.49775 * 19 5 4 21 21 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 22 22 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 23 23 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 24 24 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 25 25 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 26 26 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 27 27 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 28 28 H 1.09004 * 109.47454 * 300.00132 * 7 6 5 29 29 H 1.09006 * 109.47180 * 60.00059 * 7 6 5 30 30 H 1.00900 * 110.99993 * 303.95602 * 8 7 6 31 31 H 1.08993 * 109.46918 * 299.99785 * 9 8 7 32 32 H 1.08995 * 109.47026 * 60.00418 * 9 8 7 33 33 H 1.09000 * 109.47255 * 299.99277 * 10 9 8 34 34 H 1.08994 * 109.47785 * 60.00076 * 10 9 8 35 35 H 0.96996 * 119.99719 * 180.02562 * 14 13 11 36 36 H 1.07999 * 119.99934 * 180.25938 * 19 5 4 37 37 H 1.08001 * 120.00294 * 179.76453 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2941 -0.0027 1.4304 8 7 7.7631 -0.0021 1.4249 9 6 8.2948 -0.0053 2.7943 10 6 9.8241 -0.0039 2.7476 11 6 10.3694 -0.0078 4.1525 12 1 9.6930 -0.0105 4.9943 13 6 11.7321 -0.0079 4.3630 14 7 12.5559 -0.0051 3.3378 15 14 12.4082 -0.0120 6.1043 16 1 12.5877 -1.4132 6.5624 17 1 13.7175 0.6883 6.1287 18 1 11.4568 0.6856 7.0063 19 6 3.5805 -1.1972 0.0010 20 6 2.1982 -1.1972 0.0009 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5139 24 1 1.6582 2.1324 -0.0004 25 1 4.1205 2.1325 0.0001 26 1 6.1400 -0.8891 -0.5270 27 1 6.1401 0.8909 -0.5236 28 1 5.9328 0.8863 1.9473 29 1 5.9327 -0.8937 1.9440 30 1 8.1231 -0.7823 0.8958 31 1 7.9470 0.8832 3.3211 32 1 7.9477 -0.8967 3.3167 33 1 10.1723 -0.8923 2.2207 34 1 10.1709 0.8876 2.2253 35 1 13.5144 -0.0056 3.4859 36 1 4.1205 -2.1325 0.0013 37 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258910302.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:14 Heat of formation + Delta-G solvation = -22.008875 kcal Electronic energy + Delta-G solvation = -15035.149132 eV Core-core repulsion = 12582.166939 eV Total energy + Delta-G solvation = -2452.982194 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.38029 -37.81908 -35.53650 -34.43399 -32.04561 -31.79224 -29.90694 -27.07888 -25.49392 -23.59395 -23.16271 -22.50281 -21.36160 -18.52483 -17.07822 -17.00677 -16.55156 -16.20741 -16.01095 -15.30241 -15.02968 -14.63569 -14.51557 -14.24365 -14.19670 -13.43973 -13.33091 -13.22727 -12.96493 -12.86800 -12.53348 -12.36909 -12.17498 -11.91917 -11.90722 -11.65750 -11.41686 -11.23909 -10.57344 -9.81206 -9.36944 -9.31557 -8.21306 -6.33092 0.42581 0.51785 1.39973 1.41815 1.53100 2.40056 2.82202 3.11958 3.33584 3.90247 4.00562 4.13599 4.17919 4.20977 4.28683 4.48906 4.56039 4.60253 4.62075 4.65486 4.85093 4.85478 4.97001 4.99997 5.04754 5.13496 5.24324 5.33705 5.43064 5.53857 5.65678 5.72374 5.77001 5.77085 6.11370 6.15851 6.25032 6.52811 6.83993 7.36197 8.90971 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.061515 B = 0.003268 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.065646 B = 8565.767836 C = 8693.150996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.102 4.102 3 C -0.128 4.128 4 C -0.125 4.125 5 C -0.096 4.096 6 C -0.069 4.069 7 C 0.071 3.929 8 N -0.698 5.698 9 C 0.083 3.917 10 C 0.032 3.968 11 C -0.547 4.547 12 H 0.060 0.940 13 C 0.000 4.000 14 N -0.932 5.932 15 Si 0.969 3.031 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.263 1.263 19 C -0.125 4.125 20 C -0.129 4.129 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.138 0.862 25 H 0.127 0.873 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.026 0.974 30 H 0.340 0.660 31 H 0.056 0.944 32 H 0.018 0.982 33 H -0.007 1.007 34 H -0.005 1.005 35 H 0.265 0.735 36 H 0.128 0.872 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.286 -0.963 -7.456 24.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.102 4.102 3 C -0.146 4.146 4 C -0.143 4.143 5 C -0.097 4.097 6 C -0.107 4.107 7 C -0.058 4.058 8 N -0.329 5.329 9 C -0.046 4.046 10 C -0.006 4.006 11 C -0.585 4.585 12 H 0.078 0.922 13 C -0.198 4.198 14 N -0.572 5.572 15 Si 0.793 3.207 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.188 1.188 19 C -0.143 4.143 20 C -0.146 4.146 21 H 0.097 0.903 22 H 0.092 0.908 23 H 0.092 0.908 24 H 0.156 0.844 25 H 0.145 0.855 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.044 0.956 30 H 0.158 0.842 31 H 0.074 0.926 32 H 0.036 0.964 33 H 0.011 0.989 34 H 0.014 0.986 35 H 0.073 0.927 36 H 0.146 0.854 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -23.072 -0.271 -7.564 24.282 hybrid contribution 0.724 -0.882 0.954 1.487 sum -22.349 -1.152 -6.610 23.334 Atomic orbital electron populations 1.20821 0.89415 1.03533 1.03037 1.20292 0.97539 0.93036 0.99360 1.21297 0.93954 0.98561 1.00808 1.21276 0.94828 0.97903 1.00252 1.19922 0.95310 0.93819 1.00618 1.20470 0.90629 1.03655 0.95924 1.21891 0.86999 1.00120 0.96840 1.60511 1.07461 1.50260 1.14688 1.21783 0.95817 0.98652 0.88334 1.18924 0.90920 0.95161 0.95584 1.21621 0.92342 1.51076 0.93498 0.92202 1.25999 0.97491 0.94553 1.01757 1.70108 1.03283 1.51339 1.32429 0.85398 0.77715 0.78557 0.79070 1.19633 1.20596 1.18754 1.21266 0.94834 0.97816 1.00401 1.21295 0.93972 0.98538 1.00839 0.90332 0.90802 0.90819 0.84444 0.85502 0.90506 0.90409 0.91839 0.95605 0.84192 0.92559 0.96356 0.98885 0.98649 0.92669 0.85422 0.84418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.01 71.24 0.71 -0.59 16 2 C -0.10 -1.83 5.88 -19.86 -0.12 -1.94 16 3 C -0.13 -2.44 9.70 22.27 0.22 -2.22 16 4 C -0.12 -2.72 9.70 22.27 0.22 -2.50 16 5 C -0.10 -2.23 5.13 -19.87 -0.10 -2.33 16 6 C -0.07 -1.70 5.60 29.84 0.17 -1.53 16 7 C 0.07 2.10 5.67 86.30 0.49 2.59 16 8 N -0.70 -25.63 6.50 -513.89 -3.34 -28.97 16 9 C 0.08 3.64 5.62 86.30 0.49 4.12 16 10 C 0.03 1.73 5.23 29.85 0.16 1.89 16 11 C -0.55 -31.92 9.11 25.60 0.23 -31.69 16 12 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 13 C 0.00 0.00 5.46 84.66 0.46 0.46 16 14 N -0.93 -57.63 13.29 21.45 0.28 -57.35 16 15 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 16 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 19 C -0.13 -2.67 9.70 22.27 0.22 -2.45 16 20 C -0.13 -2.41 9.70 22.27 0.22 -2.19 16 21 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 22 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16 23 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16 24 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 25 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 26 H 0.08 1.76 8.09 -2.39 -0.02 1.74 16 27 H 0.08 1.95 8.09 -2.39 -0.02 1.93 16 28 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.03 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.34 11.93 8.73 -89.69 -0.78 11.14 16 31 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 33 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 34 H 0.00 -0.30 8.14 -2.39 -0.02 -0.31 16 35 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 36 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 37 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -65.87 313.53 2.56 -63.31 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.24 Total: 14.61 kcal Atomic # 6 Polarization: -41.76 SS G_CDS: 3.35 Total: -38.40 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -3.06 Total: -86.32 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -65.87 2.56 -63.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258910302.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.299 kcal (2) G-P(sol) polarization free energy of solvation -65.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds