Wall clock time and date at job start Thu Apr 9 2020 12:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50698 * 120.00206 * 180.26181 * 6 5 4 8 8 C 1.53000 * 109.46770 * 270.21487 * 7 6 5 9 9 N 1.46901 * 109.47138 * 179.97438 * 8 7 6 10 10 C 1.46901 * 111.00034 * 66.04278 * 9 8 7 11 11 C 1.46904 * 111.00302 * 189.99668 * 9 8 7 12 12 C 1.50703 * 109.47187 * 169.99894 * 11 9 8 13 13 H 1.07999 * 120.00081 * 0.02562 * 12 11 9 14 14 C 1.37876 * 119.99806 * 180.02562 * 12 11 9 15 15 N 1.31510 * 119.99927 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99807 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47083 * 89.99942 * 16 14 12 18 18 H 1.48492 * 109.46984 * 209.99896 * 16 14 12 19 19 H 1.48494 * 109.47044 * 330.00249 * 16 14 12 20 20 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 21 21 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 22 22 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 23 23 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 24 24 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 25 25 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 26 26 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 27 27 H 1.09005 * 109.47039 * 30.20591 * 7 6 5 28 28 H 1.08995 * 109.47567 * 150.21599 * 7 6 5 29 29 H 1.08997 * 109.47347 * 299.99738 * 8 7 6 30 30 H 1.09001 * 109.47565 * 60.00121 * 8 7 6 31 31 H 1.09006 * 109.46784 * 60.00241 * 10 9 8 32 32 H 1.09003 * 109.47135 * 179.97438 * 10 9 8 33 33 H 1.08995 * 109.47131 * 300.00346 * 10 9 8 34 34 H 1.08992 * 109.47165 * 290.00208 * 11 9 8 35 35 H 1.09003 * 109.46650 * 50.00202 * 11 9 8 36 36 H 0.97004 * 119.99653 * 180.02562 * 15 14 12 37 37 H 1.08001 * 119.99700 * 359.96970 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0005 8 6 4.5891 -2.9437 -1.4431 9 7 5.3241 -4.2156 -1.4431 10 6 4.5024 -5.2985 -0.8862 11 6 5.7935 -4.5524 -2.7938 12 6 6.7427 -5.7205 -2.7191 13 1 6.9737 -6.1683 -1.7638 14 6 7.3160 -6.2176 -3.8702 15 7 7.0351 -5.6720 -5.0333 16 14 8.4920 -7.6661 -3.7776 17 1 7.7282 -8.9329 -3.9075 18 1 9.4829 -7.5704 -4.8794 19 1 9.1997 -7.6464 -2.4723 20 6 2.1981 -1.1970 -0.0005 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5140 24 1 1.6583 2.1326 0.0004 25 1 4.1204 2.1326 0.0010 26 1 5.3517 -0.0001 -0.0091 27 1 5.2866 -2.3718 0.5133 28 1 3.7450 -3.2618 0.5132 29 1 3.6367 -3.0740 -1.9569 30 1 5.1782 -2.1841 -1.9569 31 1 3.6005 -5.4160 -1.4870 32 1 5.0704 -6.2287 -0.8985 33 1 4.2264 -5.0544 0.1396 34 1 4.9410 -4.8164 -3.4195 35 1 6.3079 -3.6932 -3.2243 36 1 7.4382 -6.0220 -5.8432 37 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258912512.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:18 Heat of formation + Delta-G solvation = 10.481621 kcal Electronic energy + Delta-G solvation = -15621.385333 eV Core-core repulsion = 13169.812033 eV Total energy + Delta-G solvation = -2451.573300 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.43867 -36.76725 -33.63964 -32.51642 -31.83317 -28.65652 -27.04959 -26.77647 -25.24560 -22.75059 -21.84109 -20.39398 -19.81177 -16.44454 -16.29394 -15.53908 -15.16694 -14.59721 -14.33635 -14.02200 -13.80315 -13.37138 -13.11494 -12.69926 -12.57000 -12.25176 -12.17708 -11.87211 -11.34825 -11.22411 -11.01355 -10.92055 -10.84678 -10.54419 -10.47648 -10.28569 -9.79900 -9.20821 -8.70722 -8.47344 -8.41973 -7.21110 -6.00558 -4.01900 1.41778 1.45096 3.33089 3.39138 3.43786 3.80380 4.44111 4.76926 4.81869 4.91634 5.15093 5.25115 5.33549 5.36987 5.42779 5.48992 5.59596 5.70864 5.73489 5.79320 6.00131 6.08819 6.14110 6.24005 6.28943 6.43907 6.51360 6.55853 6.61293 6.78063 6.82080 7.09274 7.32768 7.37802 7.82496 8.11666 8.23174 8.58008 9.05898 9.62189 11.10432 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.048634 B = 0.004271 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.592832 B = 6553.538379 C = 6669.643539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.133 4.133 4 C -0.116 4.116 5 C -0.122 4.122 6 C -0.066 4.066 7 C -0.079 4.079 8 C 0.064 3.936 9 N -0.542 5.542 10 C 0.035 3.965 11 C 0.192 3.808 12 C -0.507 4.507 13 H 0.064 0.936 14 C 0.054 3.946 15 N -0.899 5.899 16 Si 0.898 3.102 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 C -0.119 4.119 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.116 0.884 25 H 0.119 0.881 26 H 0.123 0.877 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.021 0.979 30 H 0.067 0.933 31 H 0.009 0.991 32 H 0.073 0.927 33 H 0.046 0.954 34 H -0.010 1.010 35 H 0.029 0.971 36 H 0.261 0.739 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.498 11.264 10.313 18.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.151 4.151 4 C -0.134 4.134 5 C -0.140 4.140 6 C -0.066 4.066 7 C -0.117 4.117 8 C -0.065 4.065 9 N -0.266 5.266 10 C -0.113 4.113 11 C 0.067 3.933 12 C -0.545 4.545 13 H 0.082 0.918 14 C -0.147 4.147 15 N -0.539 5.539 16 Si 0.726 3.274 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.197 1.197 20 C -0.137 4.137 21 H 0.087 0.913 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.134 0.866 25 H 0.137 0.863 26 H 0.141 0.859 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.028 0.972 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.008 0.992 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.034 11.295 10.409 18.347 hybrid contribution -0.058 -0.818 -0.716 1.089 sum -10.091 10.477 9.692 17.480 Atomic orbital electron populations 1.20775 0.91482 1.02474 1.02231 1.19886 0.95866 0.93254 0.99900 1.20945 0.94306 0.97224 1.02583 1.21106 0.94249 0.97927 1.00136 1.21110 1.00095 0.91935 1.00830 1.20027 0.93629 0.95512 0.97455 1.20686 0.99894 0.92664 0.98463 1.21988 0.96433 0.93803 0.94294 1.62111 1.36604 1.00947 1.26958 1.22255 0.95363 0.96403 0.97312 1.19734 0.94456 0.96742 0.82366 1.21178 1.25735 1.14346 0.93282 0.91833 1.24998 0.96982 0.97375 0.95325 1.69966 1.44421 1.41567 0.97962 0.86496 0.80713 0.82484 0.77731 1.20764 1.21259 1.19743 1.20957 0.93743 0.97450 1.01573 0.91284 0.91653 0.91801 0.86559 0.86297 0.85921 0.90270 0.91215 0.96034 0.91429 0.97214 0.90785 0.93525 0.99207 0.95263 0.92950 0.86300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.01 36.01 0.36 -0.64 16 2 C -0.09 -1.05 5.88 -104.62 -0.62 -1.66 16 3 C -0.13 -1.49 9.70 -39.58 -0.38 -1.88 16 4 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 5 C -0.12 -1.60 9.70 -39.58 -0.38 -1.98 16 6 C -0.07 -0.92 5.13 -104.63 -0.54 -1.46 16 7 C -0.08 -1.21 5.27 -27.88 -0.15 -1.35 16 8 C 0.06 1.19 4.94 -3.82 -0.02 1.17 16 9 N -0.54 -12.02 4.75 -244.36 -1.16 -13.18 16 10 C 0.04 0.70 9.14 60.07 0.55 1.25 16 11 C 0.19 5.15 4.72 -4.97 -0.02 5.13 16 12 C -0.51 -14.49 8.46 -34.44 -0.29 -14.78 16 13 H 0.06 1.79 7.12 -52.49 -0.37 1.42 16 14 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 16 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 C -0.12 -1.56 9.36 -39.58 -0.37 -1.93 16 21 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 23 H 0.06 0.48 8.09 -51.92 -0.42 0.06 16 24 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 25 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 26 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 27 H 0.08 1.21 8.09 -51.93 -0.42 0.79 16 28 H 0.07 1.01 6.50 -51.93 -0.34 0.68 16 29 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 30 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 31 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.07 1.57 6.76 -51.93 -0.35 1.21 16 33 H 0.05 0.78 6.47 -51.93 -0.34 0.44 16 34 H -0.01 -0.28 8.12 -51.93 -0.42 -0.71 16 35 H 0.03 0.84 7.93 -51.93 -0.41 0.42 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 306.75 15.07 4.62 4.62 Total: -1.00 -30.63 306.75 -9.18 -39.80 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -6.00 Total: -3.23 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -2.36 Total: -18.43 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: -0.43 Total: -39.58 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.63 -9.18 -39.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258912512.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.286 kcal (2) G-P(sol) polarization free energy of solvation -30.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds