Wall clock time and date at job start Thu Apr 9 2020 12:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.50698 * 119.99559 * 179.71963 * 5 4 3 7 7 N 1.46892 * 109.47190 * 259.99470 * 6 5 4 8 8 C 1.46900 * 111.00115 * 180.02562 * 7 6 5 9 9 C 1.53007 * 109.47204 * 179.97438 * 8 7 6 10 10 C 1.50693 * 109.47064 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00505 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99941 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99659 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99861 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.46806 * 60.00496 * 14 12 10 16 16 H 1.48502 * 109.46686 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47103 * 299.99709 * 14 12 10 18 18 C 1.38208 * 120.00078 * 359.52112 * 5 4 3 19 19 C 1.50697 * 120.00178 * 180.21352 * 18 5 4 20 20 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 21 21 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 22 22 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 23 23 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 24 24 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 25 25 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 26 26 H 1.09000 * 109.47511 * 19.99846 * 6 5 4 27 27 H 1.09008 * 109.47004 * 139.99281 * 6 5 4 28 28 H 1.00899 * 110.99977 * 303.95468 * 7 6 5 29 29 H 1.08995 * 109.47451 * 299.99820 * 8 7 6 30 30 H 1.09003 * 109.47183 * 60.00241 * 8 7 6 31 31 H 1.09004 * 109.46602 * 300.00267 * 9 8 7 32 32 H 1.08998 * 109.46917 * 59.99553 * 9 8 7 33 33 H 0.97006 * 119.99544 * 180.02562 * 13 12 10 34 34 H 1.09004 * 109.47662 * 270.21974 * 19 18 5 35 35 H 1.09005 * 109.46941 * 30.21466 * 19 18 5 36 36 H 1.09000 * 109.47383 * 150.21880 * 19 18 5 37 37 H 1.08001 * 119.99686 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 5.7787 0.0000 -0.0107 7 7 6.2631 -0.2374 -1.3770 8 6 7.7314 -0.2447 -1.4212 9 6 8.1972 -0.4949 -2.8570 10 6 9.7035 -0.5029 -2.9022 11 1 10.2718 -0.3450 -1.9975 12 6 10.3562 -0.7120 -4.0986 13 7 9.6642 -0.9038 -5.2004 14 14 12.2234 -0.7213 -4.1547 15 1 12.7397 -1.7976 -3.2716 16 1 12.6754 -0.9642 -5.5482 17 1 12.7391 0.5912 -3.6892 18 6 3.5806 -1.1970 -0.0009 19 6 4.3341 -2.5021 -0.0020 20 6 2.1981 -1.1970 -0.0005 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5140 24 1 1.6583 2.1326 0.0004 25 1 4.1204 2.1326 0.0010 26 1 6.1434 0.9648 0.3416 27 1 6.1446 -0.7888 0.6467 28 1 5.8862 -1.0957 -1.7503 29 1 8.1100 0.7182 -1.0786 30 1 8.1105 -1.0354 -0.7737 31 1 7.8186 -1.4580 -3.1991 32 1 7.8181 0.2955 -3.5048 33 1 10.1234 -1.0512 -6.0420 34 1 4.5154 -2.8162 -1.0300 35 1 5.2867 -2.3721 0.5116 36 1 3.7451 -3.2621 0.5115 37 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258953728.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:28 Heat of formation + Delta-G solvation = -19.596258 kcal Electronic energy + Delta-G solvation = -15523.190272 eV Core-core repulsion = 13070.312698 eV Total energy + Delta-G solvation = -2452.877575 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.64337 -37.57463 -35.37125 -34.17232 -33.05084 -31.34426 -28.60813 -28.01910 -26.15814 -24.25100 -23.01072 -22.43476 -20.89703 -18.51287 -17.30305 -16.88813 -16.46303 -16.05689 -15.73904 -15.55104 -14.75400 -14.68896 -14.21025 -14.03447 -13.96927 -13.87647 -13.39928 -13.25524 -12.84107 -12.82316 -12.71125 -12.53212 -12.34483 -12.03901 -11.77825 -11.73239 -11.40571 -11.25762 -10.56540 -9.63319 -9.44358 -9.18751 -8.20446 -6.32525 0.42255 0.52035 1.40350 1.43987 1.51906 2.40497 2.77765 3.12728 3.54197 3.85629 3.90177 4.04933 4.10447 4.25187 4.43086 4.48427 4.56922 4.63471 4.68251 4.72742 4.79740 4.87119 4.89258 4.95122 5.04850 5.08556 5.28618 5.36944 5.42956 5.56956 5.65831 5.72196 5.76508 5.79612 6.10881 6.17760 6.25838 6.48938 6.84439 7.36790 8.91576 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.051470 B = 0.004026 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.879911 B = 6953.508980 C = 7006.904325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.093 4.093 3 C -0.136 4.136 4 C -0.109 4.109 5 C -0.101 4.101 6 C 0.099 3.901 7 N -0.691 5.691 8 C 0.083 3.917 9 C 0.032 3.968 10 C -0.546 4.546 11 H 0.062 0.938 12 C 0.000 4.000 13 N -0.932 5.932 14 Si 0.969 3.031 15 H -0.265 1.265 16 H -0.283 1.283 17 H -0.267 1.267 18 C -0.087 4.087 19 C -0.120 4.120 20 C -0.131 4.131 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.139 0.861 25 H 0.125 0.875 26 H 0.076 0.924 27 H 0.043 0.957 28 H 0.337 0.663 29 H 0.060 0.940 30 H 0.022 0.978 31 H -0.010 1.010 32 H -0.008 1.008 33 H 0.264 0.736 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.441 0.138 12.935 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.093 4.093 3 C -0.154 4.154 4 C -0.127 4.127 5 C -0.102 4.102 6 C -0.029 4.029 7 N -0.322 5.322 8 C -0.045 4.045 9 C -0.005 4.005 10 C -0.585 4.585 11 H 0.080 0.920 12 C -0.198 4.198 13 N -0.572 5.572 14 Si 0.793 3.207 15 H -0.190 1.190 16 H -0.208 1.208 17 H -0.191 1.191 18 C -0.088 4.088 19 C -0.176 4.176 20 C -0.149 4.149 21 H 0.093 0.907 22 H 0.094 0.906 23 H 0.095 0.905 24 H 0.157 0.843 25 H 0.143 0.857 26 H 0.094 0.906 27 H 0.061 0.939 28 H 0.154 0.846 29 H 0.078 0.922 30 H 0.040 0.960 31 H 0.009 0.991 32 H 0.011 0.989 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.462 0.771 12.582 20.734 hybrid contribution 1.267 -0.789 -0.109 1.496 sum -15.195 -0.018 12.473 19.659 Atomic orbital electron populations 1.20815 0.89179 1.03712 1.02944 1.20272 0.97576 0.92839 0.98660 1.21258 0.93747 0.98614 1.01743 1.21201 0.94851 0.97561 0.99133 1.19735 0.94785 0.93604 1.02046 1.20870 0.91060 1.01378 0.89570 1.60581 1.08488 1.42255 1.20922 1.21816 0.85987 0.99283 0.97462 1.18914 0.94778 0.94748 0.92096 1.21587 0.92922 1.49406 0.94572 0.91993 1.26007 1.04037 0.94578 0.95180 1.70113 1.37738 1.49719 0.99623 0.85448 0.78829 0.79176 0.77265 1.19020 1.20794 1.19136 1.19985 0.94467 0.95010 0.99292 1.20884 1.00085 0.94093 1.02540 1.21133 0.93029 0.98639 1.02119 0.90671 0.90557 0.90497 0.84316 0.85698 0.90571 0.93885 0.84567 0.92187 0.96009 0.99114 0.98919 0.92715 0.91396 0.91908 0.89665 0.84422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 10.01 71.24 0.71 -0.83 16 2 C -0.09 -1.96 5.88 -19.87 -0.12 -2.07 16 3 C -0.14 -3.04 9.70 22.27 0.22 -2.83 16 4 C -0.11 -2.86 9.67 22.27 0.22 -2.64 16 5 C -0.10 -2.87 5.39 -19.87 -0.11 -2.98 16 6 C 0.10 3.04 5.24 85.56 0.45 3.49 16 7 N -0.69 -26.07 6.49 -517.93 -3.36 -29.43 16 8 C 0.08 3.61 5.62 86.31 0.49 4.10 16 9 C 0.03 1.76 5.23 29.85 0.16 1.92 16 10 C -0.55 -31.75 9.11 25.60 0.23 -31.52 16 11 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 12 C 0.00 0.00 5.46 84.66 0.46 0.46 16 13 N -0.93 -57.80 13.29 21.45 0.28 -57.51 16 14 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 15 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 18 C -0.09 -2.23 5.88 -19.87 -0.12 -2.35 16 19 C -0.12 -2.73 8.98 71.24 0.64 -2.09 16 20 C -0.13 -2.94 9.36 22.27 0.21 -2.73 16 21 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.08 0.89 8.09 -2.39 -0.02 0.87 16 23 H 0.08 0.89 8.09 -2.38 -0.02 0.87 16 24 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 25 H 0.13 3.06 8.04 -2.91 -0.02 3.04 16 26 H 0.08 2.27 8.00 -2.39 -0.02 2.25 16 27 H 0.04 1.25 6.40 -2.38 -0.02 1.23 16 28 H 0.34 12.58 7.84 -89.69 -0.70 11.88 16 29 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 31 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 32 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 33 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 34 H 0.07 1.63 7.92 -2.38 -0.02 1.61 16 35 H 0.06 1.49 6.13 -2.38 -0.01 1.47 16 36 H 0.08 1.54 8.09 -2.39 -0.02 1.52 16 37 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -66.21 307.64 2.72 -63.49 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.33 Total: 16.82 kcal Atomic # 6 Polarization: -43.49 SS G_CDS: 3.44 Total: -40.06 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -3.08 Total: -86.94 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -66.21 2.72 -63.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258953728.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.897 kcal (2) G-P(sol) polarization free energy of solvation -66.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds