Wall clock time and date at job start Thu Apr 9 2020 12:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 119.99913 * 2 1 4 4 C 1.38208 * 120.00021 * 180.02562 * 3 2 1 5 5 C 1.38255 * 120.00227 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00038 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.47066 * 90.00189 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46916 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46807 * 179.97438 * 9 8 7 11 11 H 1.07995 * 120.00107 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99714 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99944 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99765 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47371 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46838 * 120.00669 * 14 12 10 17 17 H 1.48505 * 109.46977 * 239.99980 * 14 12 10 18 18 C 1.38213 * 119.99581 * 0.25642 * 5 4 3 19 19 C 1.38213 * 120.00338 * 180.02562 * 2 1 3 20 20 C 1.50701 * 119.99797 * 0.02562 * 19 2 1 21 21 H 1.09006 * 109.46935 * 90.00761 * 1 2 3 22 22 H 1.09000 * 109.47123 * 210.00352 * 1 2 3 23 23 H 1.08994 * 109.47338 * 330.00312 * 1 2 3 24 24 H 1.08004 * 119.99900 * 359.97438 * 3 2 1 25 25 H 1.08004 * 119.99713 * 179.97438 * 4 3 2 26 26 H 1.09001 * 109.47558 * 330.00352 * 6 5 4 27 27 H 1.08998 * 109.47216 * 210.00015 * 6 5 4 28 28 H 1.00901 * 110.99869 * 56.04737 * 7 6 5 29 29 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 30 30 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 31 31 H 1.08995 * 109.46615 * 299.99641 * 9 8 7 32 32 H 1.08996 * 109.46939 * 60.00272 * 9 8 7 33 33 H 0.97007 * 120.00038 * 179.97438 * 13 12 10 34 34 H 1.08001 * 119.99902 * 179.72249 * 18 5 4 35 35 H 1.09002 * 109.46507 * 89.99895 * 20 19 2 36 36 H 1.08992 * 109.47230 * 209.99770 * 20 19 2 37 37 H 1.08997 * 109.47345 * 330.00486 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 5.7787 0.0002 -0.0017 7 7 6.2694 0.0008 1.3830 8 6 7.7380 0.0015 1.4210 9 6 8.2104 0.0015 2.8763 10 6 9.7169 0.0015 2.9153 11 1 10.2809 0.0012 1.9943 12 6 10.3751 0.0021 4.1268 13 7 9.6883 0.0020 5.2483 14 14 12.2425 0.0015 4.1751 15 1 12.7736 0.0010 2.7884 16 1 12.7196 1.2142 4.8871 17 1 12.7188 -1.2108 4.8885 18 6 3.5807 -1.1968 -0.0054 19 6 2.1982 -1.1969 -0.0005 20 6 1.4447 -2.5020 -0.0017 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8899 0.5137 24 1 1.6583 2.1327 -0.0004 25 1 4.1203 2.1328 -0.0010 26 1 6.1417 0.8900 -0.5161 27 1 6.1417 -0.8900 -0.5154 28 1 5.8944 -0.7804 1.8998 29 1 8.1149 -0.8885 0.9170 30 1 8.1140 0.8915 0.9165 31 1 7.8335 0.8912 3.3805 32 1 7.8343 -0.8888 3.3803 33 1 10.1513 0.0020 6.1007 34 1 4.1207 -2.1321 -0.0099 35 1 1.2635 -2.8159 -1.0297 36 1 2.0336 -3.2620 0.5118 37 1 0.4921 -2.3721 0.5117 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259008307.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:36 Heat of formation + Delta-G solvation = -0.994505 kcal Electronic energy + Delta-G solvation = -15327.473590 eV Core-core repulsion = 12875.402648 eV Total energy + Delta-G solvation = -2452.070942 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.63938 -36.16424 -33.73608 -32.61320 -32.07111 -29.67013 -27.63605 -26.77592 -24.49370 -22.92064 -21.98912 -20.61590 -19.84752 -16.31046 -16.00151 -15.85671 -15.00214 -14.68733 -14.41099 -14.35619 -13.86382 -13.25131 -13.07946 -12.92082 -12.81270 -12.29996 -12.13981 -12.02334 -11.82205 -11.57867 -11.04956 -10.96416 -10.88669 -10.72529 -10.48876 -9.98470 -9.39664 -9.13692 -8.68516 -8.38460 -8.33763 -7.78105 -5.98366 -4.01000 1.39787 1.46979 3.32119 3.39327 3.43494 3.76190 4.45919 4.75775 4.76348 4.90874 5.01732 5.09963 5.13731 5.32923 5.37551 5.38452 5.54269 5.60597 5.63172 5.71393 5.76250 5.82157 5.88510 6.19215 6.23078 6.34033 6.41066 6.51917 6.66639 6.78361 6.99075 7.10274 7.48911 7.74771 7.83958 7.97128 8.10255 8.44955 9.06554 9.62722 11.13098 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.051790 B = 0.003764 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.516224 B = 7437.039231 C = 7511.990128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.095 4.095 3 C -0.119 4.119 4 C -0.100 4.100 5 C -0.074 4.074 6 C 0.095 3.905 7 N -0.686 5.686 8 C 0.065 3.935 9 C 0.025 3.975 10 C -0.521 4.521 11 H 0.055 0.945 12 C 0.057 3.943 13 N -0.893 5.893 14 Si 0.893 3.107 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.112 4.112 19 C -0.091 4.091 20 C -0.115 4.115 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.119 0.881 25 H 0.123 0.877 26 H 0.075 0.925 27 H 0.031 0.969 28 H 0.337 0.663 29 H 0.015 0.985 30 H 0.059 0.941 31 H 0.026 0.974 32 H 0.014 0.986 33 H 0.260 0.740 34 H 0.118 0.882 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.314 -1.755 -11.885 21.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.096 4.096 3 C -0.137 4.137 4 C -0.119 4.119 5 C -0.074 4.074 6 C -0.034 4.034 7 N -0.317 5.317 8 C -0.063 4.063 9 C -0.013 4.013 10 C -0.560 4.560 11 H 0.073 0.927 12 C -0.144 4.144 13 N -0.532 5.532 14 Si 0.721 3.279 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.131 4.131 19 C -0.091 4.091 20 C -0.172 4.172 21 H 0.085 0.915 22 H 0.087 0.913 23 H 0.082 0.918 24 H 0.137 0.863 25 H 0.141 0.859 26 H 0.094 0.906 27 H 0.049 0.951 28 H 0.154 0.846 29 H 0.034 0.966 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.032 0.968 33 H 0.070 0.930 34 H 0.136 0.864 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.319 -1.071 -11.633 20.891 hybrid contribution 1.329 -0.863 -0.086 1.587 sum -15.990 -1.934 -11.719 19.919 Atomic orbital electron populations 1.20825 0.91656 1.02655 1.01968 1.19699 0.95697 0.92771 1.01396 1.20983 0.94233 0.97227 1.01288 1.21019 0.93791 0.97878 0.99163 1.19886 0.95624 0.93021 0.98873 1.20892 0.89838 1.00780 0.91871 1.60641 1.10376 1.49936 1.10705 1.22191 0.83966 0.98678 1.01437 1.19077 0.95352 0.97766 0.89091 1.21217 0.91722 1.50747 0.92295 0.92689 1.25012 0.98367 0.95327 0.95725 1.69988 1.35209 1.50733 0.97294 0.86527 0.85791 0.77575 0.78044 1.19762 1.20971 1.21034 1.20921 0.93409 0.97670 1.01084 1.19674 0.93599 0.94759 1.01020 1.20832 1.00056 0.94274 1.02025 0.91513 0.91347 0.91797 0.86326 0.85937 0.90610 0.95072 0.84561 0.96639 0.92279 0.95606 0.96805 0.93048 0.86407 0.91467 0.91657 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.60 36.01 0.35 -0.62 16 2 C -0.10 -1.10 5.88 -104.62 -0.62 -1.71 16 3 C -0.12 -1.44 9.70 -39.58 -0.38 -1.82 16 4 C -0.10 -1.35 9.70 -39.59 -0.38 -1.74 16 5 C -0.07 -1.05 5.39 -104.63 -0.56 -1.61 16 6 C 0.10 1.47 5.81 -4.97 -0.03 1.44 16 7 N -0.69 -12.84 6.49 -115.05 -0.75 -13.59 16 8 C 0.07 1.41 5.62 -3.82 -0.02 1.39 16 9 C 0.02 0.66 5.23 -27.88 -0.15 0.51 16 10 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 11 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -27.29 13.29 55.43 0.74 -26.56 16 14 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 15 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 18 C -0.11 -1.48 9.36 -39.59 -0.37 -1.85 16 19 C -0.09 -1.08 5.88 -104.63 -0.62 -1.69 16 20 C -0.12 -1.04 9.60 36.01 0.35 -0.70 16 21 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.07 0.52 5.95 -51.93 -0.31 0.21 16 23 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 24 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 25 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 26 H 0.08 1.14 8.09 -51.93 -0.42 0.72 16 27 H 0.03 0.46 8.08 -51.93 -0.42 0.04 16 28 H 0.34 6.22 8.72 -39.29 -0.34 5.88 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 37 H 0.07 0.54 5.95 -51.93 -0.31 0.23 16 LS Contribution 309.03 15.07 4.66 4.66 Total: -1.00 -31.02 309.03 -9.21 -40.23 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.99 Total: 0.57 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -2.85 Total: -22.19 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: -0.01 Total: -40.14 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.02 -9.21 -40.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259008307.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.240 kcal (2) G-P(sol) polarization free energy of solvation -31.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds