Wall clock time and date at job start Thu Apr 9 2020 12:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 119.99913 * 2 1 4 4 C 1.38208 * 120.00021 * 180.02562 * 3 2 1 5 5 C 1.38255 * 120.00227 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00038 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.47066 * 90.00189 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46916 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46807 * 179.97438 * 9 8 7 11 11 H 1.07995 * 120.00107 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99714 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99944 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99765 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47371 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46838 * 120.00669 * 14 12 10 17 17 H 1.48505 * 109.46977 * 239.99980 * 14 12 10 18 18 C 1.38213 * 119.99581 * 0.25642 * 5 4 3 19 19 C 1.38213 * 120.00338 * 180.02562 * 2 1 3 20 20 C 1.50701 * 119.99797 * 0.02562 * 19 2 1 21 21 H 1.09006 * 109.46935 * 90.00761 * 1 2 3 22 22 H 1.09000 * 109.47123 * 210.00352 * 1 2 3 23 23 H 1.08994 * 109.47338 * 330.00312 * 1 2 3 24 24 H 1.08004 * 119.99900 * 359.97438 * 3 2 1 25 25 H 1.08004 * 119.99713 * 179.97438 * 4 3 2 26 26 H 1.09001 * 109.47558 * 330.00352 * 6 5 4 27 27 H 1.08998 * 109.47216 * 210.00015 * 6 5 4 28 28 H 1.00901 * 110.99869 * 56.04737 * 7 6 5 29 29 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 30 30 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 31 31 H 1.08995 * 109.46615 * 299.99641 * 9 8 7 32 32 H 1.08996 * 109.46939 * 60.00272 * 9 8 7 33 33 H 0.97007 * 120.00038 * 179.97438 * 13 12 10 34 34 H 1.08001 * 119.99902 * 179.72249 * 18 5 4 35 35 H 1.09002 * 109.46507 * 89.99895 * 20 19 2 36 36 H 1.08992 * 109.47230 * 209.99770 * 20 19 2 37 37 H 1.08997 * 109.47345 * 330.00486 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 5.7787 0.0002 -0.0017 7 7 6.2694 0.0008 1.3830 8 6 7.7380 0.0015 1.4210 9 6 8.2104 0.0015 2.8763 10 6 9.7169 0.0015 2.9153 11 1 10.2809 0.0012 1.9943 12 6 10.3751 0.0021 4.1268 13 7 9.6883 0.0020 5.2483 14 14 12.2425 0.0015 4.1751 15 1 12.7736 0.0010 2.7884 16 1 12.7196 1.2142 4.8871 17 1 12.7188 -1.2108 4.8885 18 6 3.5807 -1.1968 -0.0054 19 6 2.1982 -1.1969 -0.0005 20 6 1.4447 -2.5020 -0.0017 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8899 0.5137 24 1 1.6583 2.1327 -0.0004 25 1 4.1203 2.1328 -0.0010 26 1 6.1417 0.8900 -0.5161 27 1 6.1417 -0.8900 -0.5154 28 1 5.8944 -0.7804 1.8998 29 1 8.1149 -0.8885 0.9170 30 1 8.1140 0.8915 0.9165 31 1 7.8335 0.8912 3.3805 32 1 7.8343 -0.8888 3.3803 33 1 10.1513 0.0020 6.1007 34 1 4.1207 -2.1321 -0.0099 35 1 1.2635 -2.8159 -1.0297 36 1 2.0336 -3.2620 0.5118 37 1 0.4921 -2.3721 0.5117 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259008307.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:36 Heat of formation + Delta-G solvation = -19.097249 kcal Electronic energy + Delta-G solvation = -15328.258584 eV Core-core repulsion = 12875.402648 eV Total energy + Delta-G solvation = -2452.855936 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.58996 -37.64294 -35.38385 -34.14360 -33.05290 -31.35321 -28.76247 -27.81020 -26.14606 -24.32816 -22.93615 -22.49210 -20.89170 -18.52608 -17.19603 -16.84682 -16.48312 -16.14388 -15.79785 -15.54484 -14.99705 -14.70288 -14.20212 -14.03769 -13.92880 -13.55967 -13.39832 -13.28978 -12.87614 -12.85071 -12.61791 -12.55543 -12.38427 -12.01667 -11.80404 -11.68402 -11.40417 -11.23927 -10.58438 -9.66062 -9.41179 -9.22027 -8.21339 -6.33331 0.42053 0.51154 1.40053 1.40810 1.54291 2.39917 2.77091 3.11978 3.51962 3.86119 3.90336 4.04650 4.15521 4.25985 4.41727 4.49203 4.54569 4.65664 4.69089 4.75055 4.77005 4.88456 4.90819 5.03769 5.05159 5.07169 5.29003 5.40572 5.42881 5.55958 5.64949 5.75028 5.76397 5.77974 6.09642 6.17948 6.24703 6.47244 6.83974 7.36129 8.91146 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.051790 B = 0.003764 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.516224 B = 7437.039231 C = 7511.990128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.126 4.126 4 C -0.117 4.117 5 C -0.093 4.093 6 C 0.101 3.899 7 N -0.692 5.692 8 C 0.083 3.917 9 C 0.031 3.969 10 C -0.545 4.545 11 H 0.062 0.938 12 C -0.001 4.001 13 N -0.932 5.932 14 Si 0.970 3.030 15 H -0.261 1.261 16 H -0.278 1.278 17 H -0.277 1.277 18 C -0.125 4.125 19 C -0.099 4.099 20 C -0.114 4.114 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.139 0.861 25 H 0.122 0.878 26 H 0.078 0.922 27 H 0.039 0.961 28 H 0.337 0.663 29 H 0.021 0.979 30 H 0.060 0.940 31 H -0.007 1.007 32 H -0.010 1.010 33 H 0.264 0.736 34 H 0.122 0.878 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.898 -2.095 -12.916 22.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.099 4.099 3 C -0.144 4.144 4 C -0.135 4.135 5 C -0.094 4.094 6 C -0.028 4.028 7 N -0.323 5.323 8 C -0.045 4.045 9 C -0.006 4.006 10 C -0.583 4.583 11 H 0.080 0.920 12 C -0.199 4.199 13 N -0.572 5.572 14 Si 0.794 3.206 15 H -0.185 1.185 16 H -0.203 1.203 17 H -0.202 1.202 18 C -0.143 4.143 19 C -0.099 4.099 20 C -0.170 4.170 21 H 0.099 0.901 22 H 0.097 0.903 23 H 0.091 0.909 24 H 0.157 0.843 25 H 0.140 0.860 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.154 0.846 29 H 0.039 0.961 30 H 0.079 0.921 31 H 0.012 0.988 32 H 0.009 0.991 33 H 0.073 0.927 34 H 0.140 0.860 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.919 -1.412 -12.685 22.000 hybrid contribution 1.397 -0.754 0.231 1.604 sum -16.522 -2.166 -12.454 20.803 Atomic orbital electron populations 1.20890 0.89252 1.03669 1.03145 1.20134 0.97544 0.92338 0.99907 1.21274 0.93762 0.98580 1.00760 1.21158 0.94783 0.97664 0.99932 1.19821 0.94753 0.93924 1.00860 1.20874 0.90994 1.01207 0.89707 1.60552 1.08456 1.50151 1.13157 1.21816 0.85927 0.98961 0.97821 1.18930 0.94816 0.95014 0.91886 1.21640 0.92891 1.50918 0.92848 0.92012 1.26015 1.04108 0.94572 0.95201 1.70124 1.37621 1.51428 0.98061 0.85331 0.78819 0.77830 0.78634 1.18480 1.20316 1.20250 1.21089 0.94349 0.97464 1.01408 1.20056 0.93326 0.96351 1.00162 1.20885 1.00305 0.92738 1.03095 0.90110 0.90252 0.90928 0.84327 0.86024 0.90389 0.94258 0.84570 0.96066 0.92124 0.98825 0.99116 0.92708 0.85960 0.90145 0.91583 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 9.60 71.24 0.68 -0.90 16 2 C -0.10 -2.09 5.88 -19.86 -0.12 -2.21 16 3 C -0.13 -2.88 9.70 22.27 0.22 -2.66 16 4 C -0.12 -3.13 9.70 22.27 0.22 -2.92 16 5 C -0.09 -2.65 5.39 -19.87 -0.11 -2.75 16 6 C 0.10 3.10 5.81 85.55 0.50 3.59 16 7 N -0.69 -26.31 6.49 -517.92 -3.36 -29.67 16 8 C 0.08 3.65 5.62 86.30 0.49 4.13 16 9 C 0.03 1.71 5.23 29.85 0.16 1.87 16 10 C -0.54 -31.77 9.11 25.60 0.23 -31.54 16 11 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 12 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 13 N -0.93 -57.94 13.29 21.45 0.28 -57.66 16 14 Si 0.97 44.84 29.54 68.60 2.03 46.87 16 15 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 16 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 17 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 18 C -0.12 -3.21 9.36 22.27 0.21 -3.00 16 19 C -0.10 -2.21 5.88 -19.87 -0.12 -2.32 16 20 C -0.11 -1.80 9.60 71.24 0.68 -1.12 16 21 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 22 H 0.08 0.94 5.95 -2.39 -0.01 0.93 16 23 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 24 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 25 H 0.12 3.15 8.06 -2.91 -0.02 3.13 16 26 H 0.08 2.33 8.09 -2.39 -0.02 2.31 16 27 H 0.04 1.14 8.08 -2.39 -0.02 1.12 16 28 H 0.34 12.73 8.72 -89.69 -0.78 11.95 16 29 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 31 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 32 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 33 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 34 H 0.12 2.92 8.06 -2.91 -0.02 2.89 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 37 H 0.08 1.07 5.95 -2.39 -0.01 1.05 16 Total: -1.00 -66.69 309.03 2.70 -63.99 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.25 Total: 15.91 kcal Atomic # 6 Polarization: -42.93 SS G_CDS: 3.50 Total: -39.43 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -3.08 Total: -87.33 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -66.69 2.70 -63.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259008307.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.890 kcal (2) G-P(sol) polarization free energy of solvation -66.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds