Wall clock time and date at job start Thu Apr 9 2020 12:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86792 * 119.99955 * 2 1 4 4 H 1.48505 * 109.47133 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47074 * 300.00086 * 3 2 1 6 6 H 1.48499 * 109.47425 * 60.00294 * 3 2 1 7 7 C 1.37875 * 119.99453 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99455 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00482 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47138 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47138 * 180.02562 * 10 9 7 12 12 N 1.30932 * 126.41040 * 90.27310 * 11 10 9 13 13 C 1.35373 * 105.57879 * 180.12948 * 12 11 10 14 14 C 1.47823 * 126.44529 * 179.87605 * 13 12 11 15 15 C 1.36117 * 126.77047 * 359.69375 * 14 13 12 16 16 N 1.33688 * 107.86832 * 180.27334 * 15 14 13 17 17 C 1.30653 * 109.56523 * 359.59199 * 16 15 14 18 18 N 1.34898 * 109.01441 * 0.41025 * 17 16 15 19 19 H 0.96999 * 126.45476 * 179.77786 * 18 17 16 20 20 N 1.31005 * 107.10985 * 359.61394 * 13 12 11 21 21 O 1.21294 * 110.04946 * 0.24303 * 20 13 12 22 22 H 0.97001 * 119.99560 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.47472 * 59.99761 * 9 7 2 24 24 H 1.09002 * 109.46839 * 299.99740 * 9 7 2 25 25 H 1.08994 * 109.47114 * 59.99566 * 10 9 7 26 26 H 1.09002 * 109.47063 * 299.99627 * 10 9 7 27 27 H 1.08002 * 126.06109 * 0.02562 * 15 14 13 28 28 H 1.08001 * 125.49695 * 180.12410 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4917 -4.9672 -0.0045 12 7 1.1079 -5.6415 -1.0592 13 6 0.4705 -6.7352 -0.5793 14 6 -0.1510 -7.8112 -1.3799 15 6 -0.1990 -7.8925 -2.7378 16 7 -0.8530 -9.0135 -3.0587 17 6 -1.2080 -9.6403 -1.9687 18 7 -0.7963 -8.9291 -0.8989 19 1 -0.9293 -9.1613 0.0335 20 7 0.5131 -6.6634 0.7281 21 8 1.0951 -5.6558 1.0705 22 1 -0.4849 0.8401 0.0004 23 1 0.6247 -2.5563 -0.8919 24 1 0.6241 -2.5575 0.8881 25 1 2.8719 -3.6051 0.8872 26 1 2.8719 -3.6036 -0.8927 27 1 0.2141 -7.1763 -3.4326 28 1 -1.7483 -10.5746 -1.9302 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260028922.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:42 Heat of formation + Delta-G solvation = 113.285609 kcal Electronic energy + Delta-G solvation = -15186.322061 eV Core-core repulsion = 12434.407328 eV Total energy + Delta-G solvation = -2751.914733 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.086 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.21402 -42.14873 -35.73004 -34.56610 -32.98187 -32.41815 -30.41900 -29.53533 -25.90895 -24.41553 -23.03844 -21.72226 -21.16693 -20.69096 -18.55128 -17.78660 -16.87649 -16.39611 -15.18711 -14.86257 -14.57345 -14.48380 -13.99728 -13.58403 -13.27241 -12.48813 -12.19251 -11.82724 -11.51211 -11.04206 -10.89060 -10.76405 -10.36269 -10.34467 -10.19587 -10.18567 -9.50546 -9.30611 -8.48404 -8.44759 -6.12433 -4.17346 0.99555 1.78136 2.60665 2.66375 3.13442 3.18159 3.26494 3.34590 3.37740 3.77159 4.21332 4.38224 4.47437 4.98176 5.24472 5.29307 5.41422 5.73484 5.85466 6.02130 6.15711 6.23376 6.44330 6.55458 7.05009 7.44636 7.51340 7.74965 7.82922 8.17625 8.37217 8.88136 9.47965 10.98825 Molecular weight = 234.09amu Principal moments of inertia in cm(-1) A = 0.053127 B = 0.004552 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.908636 B = 6149.798685 C = 6363.673702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.063 0.937 9 C 0.027 3.973 10 C -0.030 4.030 11 C 0.226 3.774 12 N -0.479 5.479 13 C 0.238 3.762 14 C 0.040 3.960 15 C 0.047 3.953 16 N -0.495 5.495 17 C 0.205 3.795 18 N -0.555 5.555 19 H 0.425 0.575 20 N -0.402 5.402 21 O 0.073 5.927 22 H 0.263 0.737 23 H 0.028 0.972 24 H 0.024 0.976 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.185 0.815 28 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.160 -15.554 -0.100 15.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.081 0.919 9 C -0.012 4.012 10 C -0.069 4.069 11 C 0.007 3.993 12 N -0.212 5.212 13 C -0.033 4.033 14 C -0.076 4.076 15 C -0.106 4.106 16 N -0.214 5.214 17 C -0.079 4.079 18 N -0.159 5.159 19 H 0.264 0.736 20 N -0.113 5.113 21 O 0.016 5.984 22 H 0.072 0.928 23 H 0.046 0.954 24 H 0.042 0.958 25 H 0.112 0.888 26 H 0.121 0.879 27 H 0.202 0.798 28 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -0.523 -16.367 -0.810 16.396 hybrid contribution 0.397 1.172 1.405 1.872 sum -0.126 -15.195 0.595 15.208 Atomic orbital electron populations 1.69982 1.06168 1.26919 1.49851 1.25022 0.94882 0.99508 0.94888 0.86441 0.80043 0.83299 0.77661 1.19536 1.20917 1.20948 1.21091 0.93217 0.90122 1.51951 0.91905 1.19182 0.93576 0.89808 0.98585 1.20843 0.98014 0.83324 1.04706 1.29660 0.93663 0.96844 0.79107 1.72042 1.16329 1.04277 1.28563 1.22520 0.99445 0.94288 0.87038 1.17682 1.07347 0.89791 0.92781 1.22558 1.00208 0.96461 0.91408 1.70292 1.15681 1.07309 1.28092 1.25124 1.02256 0.99582 0.80899 1.43192 1.43521 1.18153 1.11054 0.73603 1.74889 1.17137 1.04877 1.14424 1.85240 1.52285 1.24680 1.36180 0.92768 0.95387 0.95767 0.88817 0.87854 0.79801 0.76731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.84 13.29 55.43 0.74 -25.11 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 3 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 15 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 7 C -0.53 -13.76 9.11 -34.44 -0.31 -14.07 15 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 15 9 C 0.03 0.64 4.96 -27.88 -0.14 0.50 15 10 C -0.03 -0.55 5.78 -27.88 -0.16 -0.71 15 11 C 0.23 4.15 7.75 -12.98 -0.10 4.05 15 12 N -0.48 -8.96 11.58 -9.88 -0.11 -9.07 15 13 C 0.24 4.12 8.07 -156.05 -1.26 2.87 15 14 C 0.04 0.59 7.19 -82.05 -0.59 0.00 15 15 C 0.05 0.68 11.84 -17.51 -0.21 0.47 15 16 N -0.49 -6.62 11.22 -14.43 -0.16 -6.78 15 17 C 0.21 2.01 13.02 -90.38 -1.18 0.83 15 18 N -0.56 -6.01 6.19 -10.65 -0.07 -6.08 15 19 H 0.43 3.53 8.96 -40.82 -0.37 3.17 15 20 N -0.40 -7.03 12.22 30.99 0.38 -6.65 15 21 O 0.07 1.32 11.29 17.99 0.20 1.52 15 22 H 0.26 7.18 8.31 -40.82 -0.34 6.84 15 23 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 24 H 0.02 0.62 8.14 -51.93 -0.42 0.19 15 25 H 0.09 1.52 8.14 -51.93 -0.42 1.10 15 26 H 0.10 1.79 8.14 -51.93 -0.42 1.37 15 27 H 0.18 2.53 8.06 -52.49 -0.42 2.10 15 28 H 0.22 1.00 8.06 -52.49 -0.42 0.58 15 LS Contribution 263.51 15.07 3.97 3.97 Total: -1.00 -31.56 263.51 -6.56 -38.12 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -2.44 Total: -1.01 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -4.04 Total: -4.54 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 0.77 Total: -53.69 kcal Atomic # 8 Polarization: 1.32 SS G_CDS: 0.20 Total: 1.52 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.56 -6.56 -38.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260028922.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.403 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds