Wall clock time and date at job start Thu Apr 9 2020 12:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31262 * 1 3 3 Si 1.86806 * 119.99915 * 2 1 4 4 H 1.48496 * 109.46830 * 239.99741 * 3 2 1 5 5 H 1.48503 * 109.47100 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46970 * 119.99559 * 3 2 1 7 7 C 1.39063 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00164 * 162.53901 * 7 2 1 9 9 N 1.37111 * 120.00087 * 342.54362 * 7 2 1 10 10 C 1.36241 * 119.71051 * 330.56823 * 9 7 2 11 11 N 1.29829 * 123.29079 * 180.02562 * 10 9 7 12 12 C 1.35656 * 121.60521 * 359.97438 * 11 10 9 13 13 C 1.39566 * 121.61175 * 180.02562 * 12 11 10 14 14 C 1.37790 * 119.76250 * 179.97438 * 13 12 11 15 15 C 1.38746 * 120.86816 * 359.97438 * 14 13 12 16 16 C 1.38132 * 120.53916 * 0.28493 * 15 14 13 17 17 F 1.35103 * 120.27864 * 179.71806 * 16 15 14 18 18 C 1.39615 * 119.44946 * 359.44818 * 16 15 14 19 19 C 1.35334 * 119.71678 * 150.59076 * 9 7 2 20 20 O 1.21738 * 121.27600 * 0.02562 * 19 9 7 21 21 H 0.97000 * 120.00208 * 0.02562 * 1 2 3 22 22 H 1.08000 * 118.35290 * 0.02562 * 10 9 7 23 23 H 1.07995 * 120.12420 * 359.95110 * 13 12 11 24 24 H 1.07993 * 119.56902 * 179.97438 * 14 13 12 25 25 H 1.08005 * 119.73234 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2466 1.6178 0.0000 4 1 3.1004 1.6964 -1.2125 5 1 1.2816 2.7465 -0.0006 6 1 3.1003 1.6965 1.2126 7 6 2.0080 -1.2043 0.0005 8 1 3.0507 -1.2259 -0.2801 9 7 1.3699 -2.3642 0.3573 10 6 0.3347 -2.3208 1.2419 11 7 -0.3175 -3.3750 1.6280 12 6 -0.0058 -4.6122 1.1671 13 6 -0.7071 -5.7454 1.5816 14 6 -0.3584 -6.9839 1.0885 15 6 0.6830 -7.1219 0.1821 16 6 1.3967 -6.0173 -0.2404 17 9 2.4135 -6.1584 -1.1187 18 6 1.0550 -4.7530 0.2434 19 6 1.7740 -3.5424 -0.1721 20 8 2.6980 -3.5961 -0.9629 21 1 -0.4850 0.8400 -0.0004 22 1 0.0419 -1.3614 1.6421 23 1 -1.5198 -5.6521 2.2866 24 1 -0.9029 -7.8588 1.4117 25 1 0.9405 -8.1015 -0.1929 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260611413.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:58 Heat of formation + Delta-G solvation = -50.659655 kcal Electronic energy + Delta-G solvation = -15877.395363 eV Core-core repulsion = 12962.618374 eV Total energy + Delta-G solvation = -2914.776990 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 234.055 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -49.92720 -42.27814 -39.32170 -38.18907 -35.88576 -33.77503 -31.85314 -30.77278 -27.90050 -25.57555 -24.83966 -22.78710 -20.98828 -19.90711 -19.14852 -17.89781 -17.32235 -17.09671 -16.89122 -16.43327 -16.17423 -15.89730 -15.25477 -14.97631 -14.19607 -14.07205 -13.85716 -13.47024 -13.02240 -13.01318 -12.74521 -12.58145 -12.14872 -11.51356 -11.04653 -10.95804 -10.64931 -10.01187 -9.08620 -8.76264 -6.60687 -0.29198 -0.24497 1.21606 1.35321 1.40613 1.52460 1.91071 2.03264 2.41866 2.59766 3.14799 3.20184 3.35990 3.55490 3.91019 3.97602 4.32949 4.48040 4.78991 4.95548 5.08155 5.11281 5.29662 5.32325 5.52581 5.85748 5.96968 6.30126 6.62355 7.17826 7.24597 8.22253 Molecular weight = 234.05amu Principal moments of inertia in cm(-1) A = 0.041062 B = 0.008614 C = 0.007286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.724051 B = 3249.661564 C = 3841.826396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.023 3.977 3 Si 1.016 2.984 4 H -0.272 1.272 5 H -0.257 1.257 6 H -0.253 1.253 7 C -0.389 4.389 8 H 0.097 0.903 9 N -0.368 5.368 10 C 0.377 3.623 11 N -0.565 5.565 12 C 0.165 3.835 13 C -0.132 4.132 14 C -0.034 4.034 15 C -0.178 4.178 16 C 0.137 3.863 17 F -0.143 7.143 18 C -0.283 4.283 19 C 0.474 3.526 20 O -0.581 6.581 21 H 0.300 0.700 22 H 0.204 0.796 23 H 0.165 0.835 24 H 0.194 0.806 25 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.798 -6.725 5.089 9.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.186 4.186 3 Si 0.834 3.166 4 H -0.197 1.197 5 H -0.180 1.180 6 H -0.177 1.177 7 C -0.515 4.515 8 H 0.115 0.885 9 N -0.070 5.070 10 C 0.094 3.906 11 N -0.290 5.290 12 C 0.049 3.951 13 C -0.151 4.151 14 C -0.053 4.053 15 C -0.198 4.198 16 C 0.116 3.884 17 F -0.122 7.122 18 C -0.291 4.291 19 C 0.272 3.728 20 O -0.463 6.463 21 H 0.111 0.889 22 H 0.221 0.779 23 H 0.182 0.818 24 H 0.211 0.789 25 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -3.990 -6.638 5.069 9.256 hybrid contribution 1.386 0.953 -1.259 2.101 sum -2.604 -5.685 3.810 7.322 Atomic orbital electron populations 1.69777 1.07604 1.31824 1.40921 1.26579 0.96443 1.03530 0.92007 0.84689 0.78031 0.73944 0.79900 1.19668 1.18050 1.17703 1.20150 0.96985 0.83406 1.51004 0.88469 1.42796 1.25875 1.08200 1.30131 1.25098 0.82889 0.99027 0.83570 1.68829 1.31109 0.97227 1.31869 1.19255 0.91173 0.93613 0.91085 1.21193 1.01442 0.89607 1.02889 1.21516 0.93606 0.98157 0.92018 1.21428 0.98539 0.97365 1.02430 1.17904 0.87019 0.93432 0.90093 1.91471 1.57765 1.96380 1.66539 1.20936 1.05519 0.93408 1.09220 1.19012 0.86153 0.85090 0.82540 1.90664 1.32042 1.86801 1.36829 0.88893 0.77939 0.81773 0.78918 0.81039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -42.28 11.21 21.67 0.24 -42.04 15 2 C 0.02 1.09 4.97 84.98 0.42 1.52 15 3 Si 1.02 37.20 29.59 68.60 2.03 39.23 15 4 H -0.27 -10.22 7.11 99.48 0.71 -9.52 15 5 H -0.26 -8.58 7.11 99.48 0.71 -7.87 15 6 H -0.25 -8.84 7.11 99.48 0.71 -8.14 15 7 C -0.39 -21.24 9.10 84.07 0.77 -20.48 15 8 H 0.10 5.53 7.61 -2.91 -0.02 5.51 15 9 N -0.37 -20.20 2.76 -473.91 -1.31 -21.50 15 10 C 0.38 18.46 10.23 180.07 1.84 20.30 15 11 N -0.57 -25.47 10.37 -191.60 -1.99 -27.46 15 12 C 0.17 6.98 6.63 39.64 0.26 7.24 15 13 C -0.13 -3.95 10.03 22.48 0.23 -3.73 15 14 C -0.03 -0.77 10.00 22.29 0.22 -0.55 15 15 C -0.18 -5.06 10.01 22.37 0.22 -4.83 15 16 C 0.14 5.66 7.30 22.58 0.16 5.83 15 17 F -0.14 -6.54 15.84 44.97 0.71 -5.83 15 18 C -0.28 -13.58 5.90 -19.94 -0.12 -13.70 15 19 C 0.47 26.96 7.61 86.40 0.66 27.62 15 20 O -0.58 -36.29 15.57 -4.47 -0.07 -36.36 15 21 H 0.30 13.07 8.31 -92.71 -0.77 12.30 15 22 H 0.20 9.57 6.13 -2.91 -0.02 9.55 15 23 H 0.16 3.95 8.06 -2.91 -0.02 3.92 15 24 H 0.19 2.23 8.06 -2.91 -0.02 2.21 15 25 H 0.17 3.50 8.06 -2.91 -0.02 3.48 15 Total: -1.00 -68.84 234.65 5.53 -63.30 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 1.24 Total: 11.45 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: 4.67 Total: 19.21 kcal Atomic # 7 Polarization: -87.95 SS G_CDS: -3.05 Total: -91.00 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: -0.07 Total: -36.36 kcal Atomic # 9 Polarization: -6.54 SS G_CDS: 0.71 Total: -5.83 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.23 kcal Total: -68.84 5.53 -63.30 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260611413.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.644 kcal (2) G-P(sol) polarization free energy of solvation -68.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds