Wall clock time and date at job start Thu Apr 9 2020 12:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47051 * 74.29776 * 3 2 1 5 5 C 1.37097 * 120.00392 * 264.23279 * 4 3 2 6 6 H 1.07999 * 120.00234 * 197.72820 * 5 4 3 7 7 C 1.38950 * 119.99909 * 17.72207 * 5 4 3 8 8 N 1.31413 * 119.99716 * 21.42290 * 7 5 4 9 9 Si 1.86799 * 120.00252 * 201.42274 * 7 5 4 10 10 H 1.48503 * 109.46824 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47252 * 119.99972 * 9 7 5 12 12 H 1.48500 * 109.47058 * 240.00138 * 9 7 5 13 13 C 1.34776 * 119.99794 * 84.23178 * 4 3 2 14 14 O 1.21295 * 119.99787 * 179.97438 * 13 4 3 15 15 C 1.50701 * 120.00123 * 0.02562 * 13 4 3 16 16 C 1.50697 * 109.47224 * 180.02562 * 15 13 4 17 17 C 1.34511 * 125.79597 * 89.99604 * 16 15 13 18 18 C 1.41370 * 106.84626 * 180.02562 * 17 16 15 19 19 C 1.34510 * 106.84318 * 359.97438 * 18 17 16 20 20 O 1.34303 * 108.41632 * 359.73806 * 19 18 17 21 21 H 1.09006 * 109.46942 * 314.30312 * 3 2 1 22 22 H 1.08993 * 109.47197 * 194.30130 * 3 2 1 23 23 H 0.97008 * 119.99825 * 179.97438 * 8 7 5 24 24 H 1.09008 * 109.46791 * 299.99529 * 15 13 4 25 25 H 1.08994 * 109.47447 * 59.99668 * 15 13 4 26 26 H 1.08002 * 126.57662 * 0.03318 * 17 16 15 27 27 H 1.08010 * 126.58451 * 179.97438 * 18 17 16 28 28 H 1.08003 * 125.79415 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.3729 -1.3296 5 6 3.4380 -1.6741 -1.5939 6 1 4.0546 -1.9075 -2.4493 7 6 2.9911 -2.6926 -0.7610 8 7 1.9374 -2.5033 0.0011 9 14 3.8881 -4.3307 -0.7246 10 1 5.0336 -4.2889 -1.6687 11 1 4.3876 -4.5911 0.6494 12 1 2.9557 -5.4146 -1.1260 13 6 3.2100 0.5626 -2.2932 14 8 3.6149 0.2534 -3.3939 15 6 2.8351 1.9930 -2.0026 16 6 3.0519 2.8298 -3.2370 17 6 2.1415 3.0629 -4.1993 18 6 2.7647 3.8907 -5.1611 19 6 4.0186 4.1145 -4.7288 20 8 4.1850 3.4745 -3.5598 21 1 2.9716 -0.7170 0.7355 22 1 2.9709 0.9966 0.2538 23 1 1.6251 -3.2145 0.5823 24 1 1.7859 2.0415 -1.7109 25 1 3.4557 2.3737 -1.1915 26 1 1.1286 2.6895 -4.2311 27 1 2.3195 4.2706 -6.0689 28 1 4.7637 4.7117 -5.2335 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268799789.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:20 Heat of formation + Delta-G solvation = 22.002374 kcal Electronic energy + Delta-G solvation = -15908.491756 eV Core-core repulsion = 13120.325934 eV Total energy + Delta-G solvation = -2788.165823 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.079 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.18350 -38.83248 -35.84023 -34.40256 -32.76369 -32.11360 -31.28813 -27.59604 -26.90458 -24.49258 -21.40049 -20.64105 -19.20507 -17.98751 -16.89697 -16.68312 -16.32049 -15.39483 -14.59337 -14.48201 -14.23957 -13.65903 -13.04843 -12.80181 -12.48956 -12.41034 -12.31610 -12.04425 -11.62793 -11.43958 -11.25923 -11.16090 -10.61569 -10.39533 -10.33431 -9.55707 -9.30611 -8.75295 -8.09566 -8.04596 -6.54136 -4.03330 2.09103 2.96659 3.06567 3.21085 3.26755 3.31546 3.53910 3.73963 3.92998 4.10107 4.76240 4.86747 4.99819 5.14764 5.33633 5.35656 5.53366 5.66264 5.80088 6.02397 6.13677 6.27902 6.43890 6.46587 6.84799 7.44352 7.49788 7.84731 8.24154 8.68672 8.95923 9.14552 9.67662 10.52026 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.033893 B = 0.007419 C = 0.006486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.922367 B = 3773.312313 C = 4315.893161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.244 3.756 3 C 0.219 3.781 4 N -0.442 5.442 5 C -0.312 4.312 6 H 0.109 0.891 7 C 0.032 3.968 8 N -0.877 5.877 9 Si 0.927 3.073 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.283 1.283 13 C 0.457 3.543 14 O -0.562 6.562 15 C -0.062 4.062 16 C 0.030 3.970 17 C -0.209 4.209 18 C -0.212 4.212 19 C -0.052 4.052 20 O -0.173 6.173 21 H 0.130 0.870 22 H 0.086 0.914 23 H 0.273 0.727 24 H 0.108 0.892 25 H 0.101 0.899 26 H 0.143 0.857 27 H 0.143 0.857 28 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.852 9.592 -0.378 10.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C -0.074 4.074 3 C 0.091 3.909 4 N -0.163 5.163 5 C -0.439 4.439 6 H 0.127 0.873 7 C -0.172 4.172 8 N -0.516 5.516 9 Si 0.754 3.246 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.209 1.209 13 C 0.245 3.755 14 O -0.443 6.443 15 C -0.103 4.103 16 C -0.020 4.020 17 C -0.228 4.228 18 C -0.231 4.231 19 C -0.120 4.120 20 O -0.069 6.069 21 H 0.147 0.853 22 H 0.103 0.897 23 H 0.084 0.916 24 H 0.126 0.874 25 H 0.119 0.881 26 H 0.161 0.839 27 H 0.161 0.839 28 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 2.551 9.295 -0.624 9.659 hybrid contribution 0.405 -0.991 -0.071 1.073 sum 2.956 8.304 -0.695 8.842 Atomic orbital electron populations 1.80906 1.13577 1.12264 1.08306 1.29320 0.95370 0.90058 0.92698 1.18790 0.81628 1.01180 0.89303 1.43623 1.56736 1.08316 1.07610 1.19767 1.29900 0.80469 1.13783 0.87313 1.25280 0.94989 0.99841 0.97048 1.69866 1.19871 1.35040 1.26827 0.85844 0.79592 0.80934 0.78268 1.19076 1.20408 1.20892 1.19858 0.84448 0.86211 0.85019 1.90589 1.49537 1.81702 1.22479 1.20210 1.03910 0.92839 0.93303 1.21695 0.84084 0.97586 0.98673 1.21470 1.01485 1.04258 0.95596 1.21729 0.95310 1.04143 1.01944 1.23847 0.98876 1.02004 0.87266 1.83972 1.36425 1.51585 1.34905 0.85284 0.89663 0.91628 0.87350 0.88056 0.83916 0.83908 0.78541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.86 18.54 42.15 0.78 -10.08 15 2 C 0.24 5.19 12.95 -20.76 -0.27 4.92 15 3 C 0.22 4.14 4.91 -6.83 -0.03 4.11 15 4 N -0.44 -10.11 2.60 -117.93 -0.31 -10.42 15 5 C -0.31 -7.96 9.32 -14.93 -0.14 -8.10 15 6 H 0.11 2.96 7.39 -52.49 -0.39 2.57 15 7 C 0.03 0.78 4.87 -17.47 -0.08 0.69 15 8 N -0.88 -21.75 9.48 55.50 0.53 -21.22 15 9 Si 0.93 19.43 29.60 -169.99 -5.03 14.40 15 10 H -0.27 -5.62 7.11 56.52 0.40 -5.22 15 11 H -0.28 -5.65 7.11 56.52 0.40 -5.25 15 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 13 C 0.46 10.34 7.56 -10.99 -0.08 10.25 15 14 O -0.56 -15.03 15.68 5.54 0.09 -14.95 15 15 C -0.06 -1.09 4.84 -29.04 -0.14 -1.23 15 16 C 0.03 0.55 5.81 -35.63 -0.21 0.34 15 17 C -0.21 -3.61 10.81 -39.71 -0.43 -4.04 15 18 C -0.21 -3.15 10.91 -39.71 -0.43 -3.59 15 19 C -0.05 -0.75 12.09 29.41 0.36 -0.39 15 20 O -0.17 -3.01 10.65 5.71 0.06 -2.95 15 21 H 0.13 2.51 6.46 -51.93 -0.34 2.17 15 22 H 0.09 1.18 6.68 -51.93 -0.35 0.83 15 23 H 0.27 6.55 8.31 -40.82 -0.34 6.21 15 24 H 0.11 1.75 7.51 -51.92 -0.39 1.36 15 25 H 0.10 1.41 7.42 -51.93 -0.39 1.03 15 26 H 0.14 2.34 8.06 -52.49 -0.42 1.91 15 27 H 0.14 1.70 8.06 -52.48 -0.42 1.28 15 28 H 0.20 1.88 8.06 -52.48 -0.42 1.46 15 LS Contribution 259.88 15.07 3.92 3.92 Total: -1.00 -31.98 259.88 -3.68 -35.65 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -2.25 Total: 2.66 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -1.46 Total: 2.98 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 1.00 Total: -41.72 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: 0.15 Total: -17.90 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.40 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.98 -3.68 -35.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268799789.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.657 kcal (2) G-P(sol) polarization free energy of solvation -31.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds