Wall clock time and date at job start Thu Apr 9 2020 12:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34169 * 125.42801 * 2 1 4 4 C 1.47035 * 105.96220 * 179.97438 * 3 2 1 5 5 C 1.47289 * 127.19726 * 179.97438 * 4 3 2 6 6 O 1.21644 * 120.00105 * 186.19567 * 5 4 3 7 7 N 1.34782 * 120.00288 * 6.20179 * 5 4 3 8 8 C 1.36955 * 120.00097 * 184.69948 * 7 5 4 9 9 H 1.07993 * 120.00360 * 328.23860 * 8 7 5 10 10 C 1.38980 * 119.99947 * 148.23804 * 8 7 5 11 11 N 1.31412 * 119.99842 * 341.24195 * 10 8 7 12 12 Si 1.86796 * 120.00327 * 161.23790 * 10 8 7 13 13 H 1.48498 * 109.47366 * 90.00132 * 12 10 8 14 14 H 1.48493 * 109.47478 * 210.00117 * 12 10 8 15 15 H 1.48504 * 109.47247 * 330.00366 * 12 10 8 16 16 C 1.46502 * 119.99394 * 4.70258 * 7 5 4 17 17 C 1.47205 * 109.46843 * 274.48292 * 16 7 5 18 18 N 4.34333 * 100.96377 * 333.34198 * 2 1 3 19 19 C 1.36493 * 105.60206 * 0.02562 * 4 3 2 20 20 O 1.33670 * 108.38219 * 359.97438 * 19 4 3 21 21 H 1.08996 * 109.47074 * 89.99845 * 1 2 3 22 22 H 1.09002 * 109.46498 * 209.99851 * 1 2 3 23 23 H 1.08997 * 109.46714 * 329.99461 * 1 2 3 24 24 H 1.08002 * 127.01715 * 359.71687 * 3 2 1 25 25 H 0.97005 * 119.99894 * 179.97438 * 11 10 8 26 26 H 1.08997 * 109.47601 * 34.48644 * 16 7 5 27 27 H 1.09002 * 109.46831 * 154.48831 * 16 7 5 28 28 H 1.08000 * 125.81230 * 179.97438 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2848 1.0933 0.0000 4 6 3.6711 0.6033 0.0006 5 6 4.9016 1.4127 0.0003 6 8 5.9854 0.8719 -0.1127 7 7 4.8270 2.7526 0.1255 8 6 5.9615 3.5137 0.0288 9 1 6.9092 3.1146 0.3587 10 6 5.8931 4.7997 -0.4938 11 7 4.8601 5.1588 -1.2224 12 14 7.2694 6.0178 -0.1604 13 1 8.2976 5.9070 -1.2261 14 1 6.7178 7.3964 -0.1464 15 1 7.8873 5.7185 1.1564 16 6 3.5322 3.3948 0.3650 17 6 2.8555 3.6295 -0.9210 18 7 2.3331 3.8108 -1.9131 19 6 3.5791 -0.7585 0.0004 20 8 2.2851 -1.0936 0.0002 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3632 -0.8900 0.5138 23 1 -0.3632 0.8899 0.5139 24 1 1.9591 2.1230 -0.0043 25 1 4.8122 6.0565 -1.5869 26 1 2.9149 2.7471 0.9875 27 1 3.6872 4.3467 0.8730 28 1 4.4104 -1.4481 0.0003 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275635071.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:33 Heat of formation + Delta-G solvation = 34.459374 kcal Electronic energy + Delta-G solvation = -16221.214780 eV Core-core repulsion = 13433.589133 eV Total energy + Delta-G solvation = -2787.625647 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.079 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.13938 -38.62761 -35.87423 -34.23953 -32.93846 -31.90112 -31.23778 -27.63370 -26.29958 -25.35613 -22.38719 -20.93994 -18.45961 -17.83624 -17.02448 -16.36391 -16.01070 -15.79867 -14.76426 -14.18328 -13.84006 -13.38947 -13.29813 -12.97090 -12.87981 -12.68894 -12.02863 -11.65874 -11.61558 -11.41611 -11.22760 -11.06678 -10.60373 -10.51903 -10.35725 -9.23573 -9.19102 -8.74105 -8.18682 -7.90079 -6.49093 -4.09798 1.93352 2.45596 3.14383 3.19761 3.21931 3.26115 3.71218 3.98597 4.12978 4.26560 4.78268 4.86266 4.95095 5.23249 5.27673 5.45980 5.50963 5.60784 5.73635 5.89406 6.01873 6.22386 6.32213 6.44840 6.72068 7.41492 7.45367 8.01105 8.28133 8.82856 8.97831 9.16169 9.75562 10.55780 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.036458 B = 0.008641 C = 0.007305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.830998 B = 3239.738222 C = 3831.868775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.023 4.023 3 C -0.208 4.208 4 C -0.207 4.207 5 C 0.528 3.472 6 O -0.573 6.573 7 N -0.430 5.430 8 C -0.317 4.317 9 H 0.105 0.895 10 C 0.036 3.964 11 N -0.867 5.867 12 Si 0.928 3.072 13 H -0.277 1.277 14 H -0.282 1.282 15 H -0.267 1.267 16 C 0.207 3.793 17 C 0.243 3.757 18 N -0.462 5.462 19 C 0.016 3.984 20 O -0.182 6.182 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.087 0.913 24 H 0.166 0.834 25 H 0.274 0.726 26 H 0.101 0.899 27 H 0.110 0.890 28 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.742 -5.264 5.988 11.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.227 4.227 4 C -0.211 4.211 5 C 0.318 3.682 6 O -0.457 6.457 7 N -0.149 5.149 8 C -0.444 4.444 9 H 0.122 0.878 10 C -0.169 4.169 11 N -0.504 5.504 12 Si 0.754 3.246 13 H -0.203 1.203 14 H -0.208 1.208 15 H -0.191 1.191 16 C 0.079 3.921 17 C -0.075 4.075 18 N -0.143 5.143 19 C -0.054 4.054 20 O -0.079 6.079 21 H 0.096 0.904 22 H 0.092 0.908 23 H 0.106 0.894 24 H 0.183 0.817 25 H 0.085 0.915 26 H 0.119 0.881 27 H 0.128 0.872 28 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -8.132 -5.325 4.374 10.659 hybrid contribution 1.011 1.002 0.212 1.439 sum -7.121 -4.323 4.586 9.510 Atomic orbital electron populations 1.20264 0.85287 1.03715 1.03370 1.22244 0.93868 0.84152 1.06933 1.23474 0.91608 0.99887 1.07717 1.21853 0.94293 0.94176 1.10808 1.17227 0.86741 0.82495 0.81688 1.90636 1.29024 1.71418 1.54623 1.43270 1.05917 1.03883 1.61866 1.19584 0.88419 0.95422 1.40972 0.87786 1.25462 0.98309 0.99103 0.94070 1.69738 1.30824 1.20470 1.29407 0.85898 0.80459 0.78900 0.79296 1.20255 1.20774 1.19094 1.19222 0.85099 1.00498 0.87268 1.28886 0.91646 0.91643 0.95329 1.80851 1.13182 1.10192 1.10052 1.24200 0.83105 0.95701 1.02346 1.83672 1.16828 1.35360 1.72000 0.90358 0.90782 0.89446 0.81701 0.91546 0.88146 0.87236 0.77028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.40 36.01 0.37 -0.36 15 2 C -0.02 -0.35 7.28 -35.74 -0.26 -0.61 15 3 C -0.21 -3.64 8.09 -37.45 -0.30 -3.94 15 4 C -0.21 -4.17 6.07 -103.28 -0.63 -4.80 15 5 C 0.53 12.91 7.57 -12.58 -0.10 12.81 15 6 O -0.57 -15.64 16.71 5.24 0.09 -15.55 15 7 N -0.43 -10.50 2.55 -119.20 -0.30 -10.80 15 8 C -0.32 -8.32 9.04 -14.99 -0.14 -8.45 15 9 H 0.10 2.83 7.59 -52.49 -0.40 2.43 15 10 C 0.04 0.90 4.89 -17.46 -0.09 0.82 15 11 N -0.87 -22.68 9.84 55.50 0.55 -22.13 15 12 Si 0.93 19.78 29.59 -169.99 -5.03 14.75 15 13 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 14 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 15 H -0.27 -5.53 7.11 56.52 0.40 -5.13 15 16 C 0.21 4.22 4.72 -6.83 -0.03 4.19 15 17 C 0.24 5.46 9.93 -20.76 -0.21 5.25 15 18 N -0.46 -11.13 18.54 42.15 0.78 -10.35 15 19 C 0.02 0.28 11.91 30.10 0.36 0.64 15 20 O -0.18 -2.89 10.52 7.60 0.08 -2.81 15 21 H 0.08 0.77 8.14 -51.93 -0.42 0.35 15 22 H 0.07 0.64 8.14 -51.93 -0.42 0.22 15 23 H 0.09 0.77 8.14 -51.93 -0.42 0.35 15 24 H 0.17 2.82 3.62 -52.49 -0.19 2.63 15 25 H 0.27 6.95 8.31 -40.82 -0.34 6.61 15 26 H 0.10 1.69 4.97 -51.93 -0.26 1.43 15 27 H 0.11 2.17 7.44 -51.93 -0.39 1.78 15 28 H 0.21 3.10 8.06 -52.49 -0.42 2.67 15 LS Contribution 253.39 15.07 3.82 3.82 Total: -1.00 -32.27 253.39 -3.09 -35.36 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -2.06 Total: 2.17 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -1.01 Total: 5.54 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 1.02 Total: -43.28 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.17 Total: -18.36 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -32.27 -3.09 -35.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275635071.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.821 kcal (2) G-P(sol) polarization free energy of solvation -32.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds