Wall clock time and date at job start Thu Apr 9 2020 12:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34169 * 125.42801 * 2 1 4 4 C 1.47035 * 105.96220 * 179.97438 * 3 2 1 5 5 C 1.47289 * 127.19726 * 179.97438 * 4 3 2 6 6 O 1.21644 * 120.00105 * 186.19567 * 5 4 3 7 7 N 1.34782 * 120.00288 * 6.20179 * 5 4 3 8 8 C 1.36955 * 120.00097 * 184.69948 * 7 5 4 9 9 H 1.07993 * 120.00360 * 328.23860 * 8 7 5 10 10 C 1.38980 * 119.99947 * 148.23804 * 8 7 5 11 11 N 1.31412 * 119.99842 * 341.24195 * 10 8 7 12 12 Si 1.86796 * 120.00327 * 161.23790 * 10 8 7 13 13 H 1.48498 * 109.47366 * 90.00132 * 12 10 8 14 14 H 1.48493 * 109.47478 * 210.00117 * 12 10 8 15 15 H 1.48504 * 109.47247 * 330.00366 * 12 10 8 16 16 C 1.46502 * 119.99394 * 4.70258 * 7 5 4 17 17 C 1.47205 * 109.46843 * 274.48292 * 16 7 5 18 18 N 4.34333 * 100.96377 * 333.34198 * 2 1 3 19 19 C 1.36493 * 105.60206 * 0.02562 * 4 3 2 20 20 O 1.33670 * 108.38219 * 359.97438 * 19 4 3 21 21 H 1.08996 * 109.47074 * 89.99845 * 1 2 3 22 22 H 1.09002 * 109.46498 * 209.99851 * 1 2 3 23 23 H 1.08997 * 109.46714 * 329.99461 * 1 2 3 24 24 H 1.08002 * 127.01715 * 359.71687 * 3 2 1 25 25 H 0.97005 * 119.99894 * 179.97438 * 11 10 8 26 26 H 1.08997 * 109.47601 * 34.48644 * 16 7 5 27 27 H 1.09002 * 109.46831 * 154.48831 * 16 7 5 28 28 H 1.08000 * 125.81230 * 179.97438 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2848 1.0933 0.0000 4 6 3.6711 0.6033 0.0006 5 6 4.9016 1.4127 0.0003 6 8 5.9854 0.8719 -0.1127 7 7 4.8270 2.7526 0.1255 8 6 5.9615 3.5137 0.0288 9 1 6.9092 3.1146 0.3587 10 6 5.8931 4.7997 -0.4938 11 7 4.8601 5.1588 -1.2224 12 14 7.2694 6.0178 -0.1604 13 1 8.2976 5.9070 -1.2261 14 1 6.7178 7.3964 -0.1464 15 1 7.8873 5.7185 1.1564 16 6 3.5322 3.3948 0.3650 17 6 2.8555 3.6295 -0.9210 18 7 2.3331 3.8108 -1.9131 19 6 3.5791 -0.7585 0.0004 20 8 2.2851 -1.0936 0.0002 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3632 -0.8900 0.5138 23 1 -0.3632 0.8899 0.5139 24 1 1.9591 2.1230 -0.0043 25 1 4.8122 6.0565 -1.5869 26 1 2.9149 2.7471 0.9875 27 1 3.6872 4.3467 0.8730 28 1 4.4104 -1.4481 0.0003 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275635071.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:32 Heat of formation + Delta-G solvation = 13.125948 kcal Electronic energy + Delta-G solvation = -16222.139866 eV Core-core repulsion = 13433.589133 eV Total energy + Delta-G solvation = -2788.550733 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.079 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.47942 -40.44701 -37.73244 -36.12205 -34.45060 -33.46060 -32.64528 -29.37538 -27.55708 -27.10311 -24.03726 -22.36629 -20.01062 -19.66789 -18.57305 -18.06463 -17.59540 -17.13120 -16.56908 -15.93768 -15.43700 -15.22232 -14.72659 -14.31777 -13.97870 -13.81730 -13.72415 -13.42801 -13.24400 -12.98933 -12.85834 -12.64334 -12.46798 -12.19859 -12.03477 -11.12517 -10.73979 -10.59126 -9.88653 -9.44274 -8.43169 -6.11542 0.50296 1.07985 1.44862 1.46094 1.58969 1.92661 1.96539 2.23190 2.34615 2.47586 3.00553 3.10273 3.54730 3.67491 3.99387 4.09161 4.37095 4.50668 4.56388 4.68215 4.76629 4.88894 4.93993 5.19199 5.42713 5.45141 6.01559 6.14550 6.37446 7.02503 7.06147 7.25423 7.85925 8.59784 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.036458 B = 0.008641 C = 0.007305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.830998 B = 3239.738222 C = 3831.868775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.004 4.004 3 C -0.229 4.229 4 C -0.246 4.246 5 C 0.520 3.480 6 O -0.617 6.617 7 N -0.443 5.443 8 C -0.345 4.345 9 H 0.083 0.917 10 C 0.006 3.994 11 N -0.889 5.889 12 Si 0.993 3.007 13 H -0.285 1.285 14 H -0.271 1.271 15 H -0.258 1.258 16 C 0.208 3.792 17 C 0.256 3.744 18 N -0.493 5.493 19 C 0.036 3.964 20 O -0.174 6.174 21 H 0.088 0.912 22 H 0.098 0.902 23 H 0.106 0.894 24 H 0.167 0.833 25 H 0.274 0.726 26 H 0.140 0.860 27 H 0.115 0.885 28 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.241 -5.587 6.685 12.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.053 4.053 3 C -0.248 4.248 4 C -0.251 4.251 5 C 0.312 3.688 6 O -0.504 6.504 7 N -0.162 5.162 8 C -0.472 4.472 9 H 0.101 0.899 10 C -0.197 4.197 11 N -0.526 5.526 12 Si 0.816 3.184 13 H -0.211 1.211 14 H -0.196 1.196 15 H -0.182 1.182 16 C 0.082 3.918 17 C -0.061 4.061 18 N -0.174 5.174 19 C -0.034 4.034 20 O -0.070 6.070 21 H 0.107 0.893 22 H 0.117 0.883 23 H 0.125 0.875 24 H 0.184 0.816 25 H 0.084 0.916 26 H 0.157 0.843 27 H 0.133 0.867 28 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -9.672 -5.645 5.083 12.299 hybrid contribution 1.426 0.993 -0.022 1.738 sum -8.246 -4.652 5.061 10.736 Atomic orbital electron populations 1.20543 0.81571 1.05938 1.04685 1.23041 0.95666 0.82964 1.03636 1.23415 0.90601 1.00786 1.09995 1.21640 0.93840 0.95174 1.14437 1.17858 0.87671 0.82841 0.80429 1.90581 1.31019 1.72283 1.56493 1.43446 1.06740 1.04118 1.61849 1.19586 0.88791 0.96445 1.42399 0.89876 1.26176 1.00466 0.99913 0.93166 1.69829 1.32278 1.20684 1.29807 0.84937 0.77455 0.76930 0.79033 1.21087 1.19615 1.18217 1.19530 0.83951 1.01430 0.86876 1.29204 0.90920 0.90606 0.95374 1.80839 1.14342 1.11422 1.10825 1.24548 0.84116 0.94995 0.99753 1.83738 1.16288 1.35581 1.71343 0.89302 0.88342 0.87520 0.81606 0.91570 0.84270 0.86708 0.75050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.19 10.40 71.24 0.74 -0.45 15 2 C 0.00 -0.12 7.28 24.76 0.18 0.07 15 3 C -0.23 -7.63 8.09 23.65 0.19 -7.44 15 4 C -0.25 -9.80 6.07 -19.00 -0.12 -9.91 15 5 C 0.52 25.88 7.57 86.62 0.66 26.54 15 6 O -0.62 -34.73 16.71 -4.17 -0.07 -34.80 15 7 N -0.44 -21.94 2.55 -649.27 -1.66 -23.60 15 8 C -0.34 -18.51 9.04 84.07 0.76 -17.75 15 9 H 0.08 4.71 7.59 -2.91 -0.02 4.69 15 10 C 0.01 0.29 4.89 84.93 0.42 0.71 15 11 N -0.89 -46.49 9.84 21.67 0.21 -46.27 15 12 Si 0.99 40.61 29.59 68.60 2.03 42.64 15 13 H -0.28 -11.97 7.11 99.48 0.71 -11.27 15 14 H -0.27 -10.55 7.11 99.48 0.71 -9.85 15 15 H -0.26 -10.13 7.11 99.48 0.71 -9.43 15 16 C 0.21 8.44 4.72 84.57 0.40 8.84 15 17 C 0.26 11.42 9.93 89.45 0.89 12.31 15 18 N -0.49 -23.61 18.54 20.00 0.37 -23.24 15 19 C 0.04 1.18 11.91 67.41 0.80 1.99 15 20 O -0.17 -5.03 10.52 4.28 0.05 -4.98 15 21 H 0.09 1.39 8.14 -2.39 -0.02 1.37 15 22 H 0.10 1.22 8.14 -2.39 -0.02 1.20 15 23 H 0.11 1.43 8.14 -2.39 -0.02 1.41 15 24 H 0.17 5.41 3.62 -2.91 -0.01 5.40 15 25 H 0.27 13.84 8.31 -92.70 -0.77 13.07 15 26 H 0.14 4.51 4.97 -2.39 -0.01 4.50 15 27 H 0.12 4.49 7.44 -2.39 -0.02 4.48 15 28 H 0.23 6.43 8.06 -2.91 -0.02 6.41 15 Total: -1.00 -70.43 253.39 7.06 -63.37 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 1.21 Total: 11.99 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 4.92 Total: 14.89 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -1.07 Total: -93.11 kcal Atomic # 8 Polarization: -39.76 SS G_CDS: -0.02 Total: -39.78 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -70.43 7.06 -63.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275635071.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.497 kcal (2) G-P(sol) polarization free energy of solvation -70.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds