Wall clock time and date at job start Thu Apr 9 2020 12:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 109.47139 * 2 1 4 4 C 1.50702 * 109.46860 * 240.00169 * 2 1 3 5 5 C 1.38235 * 119.99621 * 298.76960 * 4 2 1 6 6 C 1.38238 * 119.99670 * 179.81088 * 5 4 2 7 7 C 1.38234 * 119.99897 * 0.39709 * 6 5 4 8 8 C 1.38239 * 120.00271 * 359.85793 * 7 6 5 9 9 C 1.38232 * 119.99585 * 359.95620 * 8 7 6 10 10 C 1.52997 * 109.47204 * 120.00136 * 2 1 3 11 11 H 1.09006 * 109.47110 * 58.74946 * 10 2 1 12 12 C 1.52998 * 109.47245 * 298.75425 * 10 2 1 13 13 N 1.46900 * 109.47226 * 178.74920 * 10 2 1 14 14 C 1.46898 * 111.00059 * 204.99814 * 13 10 2 15 15 C 1.50702 * 109.47038 * 180.02562 * 14 13 10 16 16 H 1.08004 * 119.99397 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00068 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99996 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00019 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47236 * 90.00043 * 19 17 15 21 21 H 1.48499 * 109.46757 * 210.00535 * 19 17 15 22 22 H 1.48503 * 109.46733 * 329.99968 * 19 17 15 23 23 H 1.08995 * 109.47501 * 59.99663 * 1 2 3 24 24 H 1.08997 * 109.47551 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47014 * 299.99911 * 1 2 3 26 26 H 1.07999 * 120.00622 * 359.97438 * 5 4 2 27 27 H 1.07999 * 120.00092 * 180.22724 * 6 5 4 28 28 H 1.08001 * 120.00235 * 179.83584 * 7 6 5 29 29 H 1.07998 * 120.00372 * 179.97438 * 8 7 6 30 30 H 1.08000 * 119.99925 * 180.02562 * 9 8 7 31 31 H 1.09002 * 109.47102 * 185.84661 * 12 10 2 32 32 H 1.08999 * 109.47721 * 65.84144 * 12 10 2 33 33 H 1.09004 * 109.46912 * 305.84350 * 12 10 2 34 34 H 1.00896 * 110.99996 * 328.95634 * 13 10 2 35 35 H 1.08998 * 109.47473 * 299.99930 * 14 13 10 36 36 H 1.08999 * 109.46992 * 60.00765 * 14 13 10 37 37 H 0.97005 * 120.00165 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.7194 -2.0410 -1.4364 6 6 2.1769 -2.6916 -2.5671 7 6 2.9540 -2.0138 -3.4877 8 6 3.2714 -0.6846 -3.2791 9 6 2.8107 -0.0330 -2.1504 10 6 2.0401 -0.7213 1.2492 11 1 1.6585 -1.7423 1.2605 12 6 1.5559 0.0178 2.4983 13 7 3.5087 -0.7475 1.2342 14 6 4.0232 -1.8744 2.0236 15 6 5.5298 -1.8682 1.9854 16 1 6.0526 -1.1032 1.4305 17 6 6.2405 -2.8389 2.6588 18 7 5.6037 -3.7706 3.3340 19 14 8.1079 -2.8307 2.6120 20 1 8.6278 -2.0184 3.7411 21 1 8.6121 -4.2225 2.7301 22 1 8.5683 -2.2448 1.3275 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.1154 -2.5717 -0.7154 27 1 1.9294 -3.7302 -2.7299 28 1 3.3137 -2.5228 -4.3698 29 1 3.8789 -0.1551 -3.9981 30 1 3.0582 1.0056 -1.9876 31 1 2.0033 -0.4336 3.3838 32 1 0.4701 -0.0521 2.5639 33 1 1.8493 1.0658 2.4370 34 1 3.8602 -0.7779 0.2889 35 1 3.6860 -1.7791 3.0557 36 1 3.6528 -2.8102 1.6052 37 1 6.1037 -4.4538 3.8075 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278733060.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:53 Heat of formation + Delta-G solvation = 6.049952 kcal Electronic energy + Delta-G solvation = -16358.379110 eV Core-core repulsion = 13906.613639 eV Total energy + Delta-G solvation = -2451.765471 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -39.49005 -36.71250 -33.58753 -31.93883 -30.69519 -30.05621 -28.03934 -26.16455 -24.07000 -22.50211 -21.88737 -20.82041 -19.21285 -16.76039 -16.37064 -15.26975 -15.05416 -14.64911 -14.39478 -13.91406 -13.54556 -13.19769 -12.89655 -12.61167 -12.31907 -12.05927 -11.93315 -11.46171 -11.35710 -11.27640 -11.15924 -10.92681 -10.69770 -10.54740 -10.34776 -10.03143 -9.72099 -9.10720 -8.67918 -8.42823 -8.41901 -7.19012 -5.98239 -3.99310 1.59490 1.64070 3.34869 3.40184 3.44560 4.01832 4.46936 4.87667 4.93900 5.19752 5.22131 5.32723 5.35290 5.38014 5.60419 5.64641 5.73204 5.77401 5.86687 5.98995 6.07198 6.17647 6.22235 6.27940 6.32758 6.44640 6.62423 6.68900 6.73411 6.83362 6.92386 7.23921 7.35355 7.51247 7.85521 8.20763 8.50905 8.71577 9.10332 9.65171 11.12939 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.021398 B = 0.007566 C = 0.006236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.240618 B = 3700.087609 C = 4489.338516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.056 4.056 3 H 0.082 0.918 4 C -0.070 4.070 5 C -0.111 4.111 6 C -0.118 4.118 7 C -0.128 4.128 8 C -0.120 4.120 9 C -0.114 4.114 10 C 0.090 3.910 11 H 0.034 0.966 12 C -0.136 4.136 13 N -0.686 5.686 14 C 0.197 3.803 15 C -0.510 4.510 16 H 0.060 0.940 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.897 3.103 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.330 0.670 35 H 0.027 0.973 36 H -0.016 1.016 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.613 5.618 -10.577 15.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.075 4.075 3 H 0.100 0.900 4 C -0.070 4.070 5 C -0.129 4.129 6 C -0.136 4.136 7 C -0.146 4.146 8 C -0.138 4.138 9 C -0.132 4.132 10 C -0.020 4.020 11 H 0.052 0.948 12 C -0.194 4.194 13 N -0.317 5.317 14 C 0.070 3.930 15 C -0.549 4.549 16 H 0.079 0.921 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.725 3.275 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.199 1.199 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.136 0.864 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.136 0.864 30 H 0.138 0.862 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.148 0.852 35 H 0.045 0.955 36 H 0.001 0.999 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.513 5.903 -9.939 14.970 hybrid contribution 0.946 -0.992 -0.489 1.455 sum -8.567 4.911 -10.427 14.361 Atomic orbital electron populations 1.21849 0.94531 1.01895 1.01564 1.20423 0.95461 0.99685 0.91894 0.89985 1.19895 0.97178 0.94189 0.95762 1.20998 1.00314 0.94331 0.97225 1.21095 0.98295 0.99579 0.94636 1.21068 0.99150 0.94864 0.99526 1.21080 1.00003 0.94967 0.97759 1.21066 0.97943 0.99977 0.94239 1.21478 0.90904 0.96759 0.92896 0.94783 1.21805 0.98731 1.00649 0.98246 1.60739 1.04160 1.49018 1.17802 1.19545 0.94806 0.85586 0.93080 1.21197 0.91314 1.11382 1.31008 0.92135 1.24976 0.98682 0.95437 0.95487 1.69965 1.35441 1.15309 1.33127 0.86516 0.85522 0.77032 0.78446 1.20639 1.21331 1.19889 0.92926 0.92711 0.91957 0.86434 0.86445 0.86567 0.86419 0.86172 0.92287 0.93540 0.92700 0.85206 0.95517 0.99850 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.70 37.16 0.32 -1.38 16 2 C -0.06 -0.82 2.30 -91.77 -0.21 -1.03 16 3 H 0.08 1.19 7.88 -51.93 -0.41 0.78 16 4 C -0.07 -1.06 3.41 -104.62 -0.36 -1.42 16 5 C -0.11 -1.69 8.73 -39.58 -0.35 -2.04 16 6 C -0.12 -1.67 10.05 -39.58 -0.40 -2.07 16 7 C -0.13 -1.71 10.05 -39.58 -0.40 -2.11 16 8 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 9 C -0.11 -1.63 9.52 -39.59 -0.38 -2.00 16 10 C 0.09 1.63 2.02 -67.72 -0.14 1.49 16 11 H 0.03 0.66 7.02 -51.93 -0.36 0.30 16 12 C -0.14 -2.27 8.95 37.16 0.33 -1.94 16 13 N -0.69 -15.23 6.30 -107.99 -0.68 -15.91 16 14 C 0.20 5.32 5.24 -4.98 -0.03 5.29 16 15 C -0.51 -14.93 9.32 -34.44 -0.32 -15.25 16 16 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 19 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.66 7.46 -51.93 -0.39 0.27 16 25 H 0.06 0.69 6.59 -51.93 -0.34 0.35 16 26 H 0.12 1.75 7.12 -52.49 -0.37 1.38 16 27 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 28 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 30 H 0.12 1.53 7.95 -52.49 -0.42 1.11 16 31 H 0.06 1.11 7.34 -51.93 -0.38 0.73 16 32 H 0.05 0.64 6.78 -51.93 -0.35 0.29 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.33 7.30 6.94 -39.29 -0.27 7.03 16 35 H 0.03 0.77 7.35 -51.93 -0.38 0.39 16 36 H -0.02 -0.47 8.06 -51.93 -0.42 -0.89 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 301.27 15.07 4.54 4.54 Total: -1.00 -30.96 301.27 -8.59 -39.55 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -5.76 Total: 4.20 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -2.41 Total: -22.92 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 0.06 Total: -42.59 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.96 -8.59 -39.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278733060.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.598 kcal (2) G-P(sol) polarization free energy of solvation -30.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds