Wall clock time and date at job start Thu Apr 9 2020 12:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00235 * 2 1 4 4 H 1.48507 * 109.47068 * 269.99725 * 3 2 1 5 5 H 1.48494 * 109.47346 * 29.99744 * 3 2 1 6 6 H 1.48498 * 109.47507 * 150.00194 * 3 2 1 7 7 C 1.37879 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00523 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99908 * 359.97438 * 7 2 1 10 10 O 1.42098 * 106.40220 * 66.46211 * 9 7 2 11 11 O 1.42105 * 106.40505 * 293.54524 * 9 7 2 12 12 N 1.65596 * 107.22025 * 180.02562 * 9 7 2 13 13 C 1.39672 * 119.99943 * 64.99828 * 12 9 7 14 14 C 1.34234 * 125.97099 * 135.00327 * 13 12 9 15 15 N 1.31789 * 115.53427 * 179.97438 * 14 13 12 16 16 C 1.29122 * 117.27052 * 0.02562 * 15 14 13 17 17 S 1.76153 * 109.27871 * 359.97438 * 16 15 14 18 18 H 0.97001 * 119.99723 * 0.02562 * 1 2 3 19 19 H 0.97003 * 119.99528 * 244.99958 * 12 9 7 20 20 H 1.07999 * 122.22949 * 359.69224 * 14 13 12 21 21 H 1.07992 * 125.35613 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4509 -2.7950 -1.2500 11 8 0.4517 -2.7956 1.2494 12 7 2.2482 -3.9355 -0.0005 13 6 3.0977 -4.1008 1.0957 14 6 3.3990 -5.2656 1.6911 15 7 4.2269 -5.1836 2.7132 16 6 4.6571 -4.0090 3.0334 17 16 3.9619 -2.8167 1.9389 18 1 -0.4850 0.8401 -0.0004 19 1 2.3169 -4.5325 -0.7619 20 1 2.9867 -6.2064 1.3577 21 1 5.3368 -3.7920 3.8440 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192939529.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:36 Heat of formation + Delta-G solvation = -46.856070 kcal Electronic energy + Delta-G solvation = -12544.048365 eV Core-core repulsion = 10059.427249 eV Total energy + Delta-G solvation = -2484.621116 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 233.992 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.08678 -35.51672 -34.75388 -34.23129 -33.23623 -28.28669 -26.35001 -24.46174 -20.29184 -19.44311 -18.37206 -17.41486 -16.69059 -16.07031 -15.01291 -14.45030 -14.06879 -13.74635 -13.62557 -13.52666 -12.19873 -11.67006 -11.49265 -11.30263 -11.07916 -10.69817 -10.54840 -10.45694 -10.23533 -9.41790 -9.30941 -8.97261 -8.65706 -8.08395 -6.85601 -5.50698 1.05685 1.53301 1.92748 2.15487 3.00140 3.07090 3.13085 3.17596 3.94079 4.41797 4.51838 4.72379 5.46088 5.56408 5.68951 6.00179 6.35044 6.50251 7.16066 7.41063 7.76426 8.00465 8.72303 10.09251 Molecular weight = 233.99amu Principal moments of inertia in cm(-1) A = 0.032428 B = 0.012096 C = 0.009533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.237512 B = 2314.196237 C = 2936.363294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.137 3.863 3 Si 0.923 3.077 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.258 1.258 7 C -1.013 5.013 8 H 0.108 0.892 9 S 2.689 3.311 10 O -0.989 6.989 11 O -0.984 6.984 12 N -1.034 6.034 13 C 0.069 3.931 14 C -0.021 4.021 15 N -0.453 5.453 16 C 0.010 3.990 17 S 0.114 5.886 18 H 0.294 0.706 19 H 0.417 0.583 20 H 0.172 0.828 21 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.446 -3.462 2.373 9.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.082 4.082 3 Si 0.746 3.254 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.182 1.182 7 C -1.148 5.148 8 H 0.126 0.874 9 S 2.790 3.210 10 O -0.979 6.979 11 O -0.974 6.974 12 N -0.779 5.779 13 C -0.152 4.152 14 C -0.177 4.177 15 N -0.166 5.166 16 C -0.289 4.289 17 S 0.362 5.638 18 H 0.105 0.895 19 H 0.253 0.747 20 H 0.189 0.811 21 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 7.505 -2.804 2.676 8.447 hybrid contribution 0.569 0.163 -0.735 0.944 sum 8.074 -2.641 1.941 8.714 Atomic orbital electron populations 1.69879 1.06854 1.31155 1.39047 1.24708 0.94475 1.00815 0.88195 0.86109 0.80322 0.79590 0.79371 1.19060 1.19785 1.18198 1.30309 1.05893 1.10837 1.67782 0.87435 1.01525 0.72398 0.73636 0.73490 1.93416 1.72027 1.87172 1.45272 1.93416 1.71830 1.86867 1.45274 1.53844 1.50020 1.51329 1.22756 1.22989 0.99278 0.96555 0.96389 1.21748 1.02612 0.98607 0.94699 1.66281 1.11135 1.24880 1.14318 1.29086 1.04917 0.89898 1.04995 1.85994 1.38584 1.10883 1.28318 0.89545 0.74732 0.81094 0.78370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.72 13.19 55.43 0.73 -22.99 14 2 C 0.14 3.65 5.46 -17.82 -0.10 3.55 14 3 Si 0.92 19.62 29.54 -169.99 -5.02 14.60 14 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 14 5 H -0.27 -5.59 7.11 56.52 0.40 -5.19 14 6 H -0.26 -5.24 7.11 56.52 0.40 -4.83 14 7 C -1.01 -26.45 8.60 30.60 0.26 -26.19 14 8 H 0.11 2.55 6.73 -52.49 -0.35 2.19 14 9 S 2.69 69.54 4.92 -107.50 -0.53 69.01 14 10 O -0.99 -27.92 18.02 -57.17 -1.03 -28.95 14 11 O -0.98 -28.30 17.74 -57.17 -1.01 -29.31 14 12 N -1.03 -20.50 5.90 31.81 0.19 -20.31 14 13 C 0.07 1.29 6.79 -15.38 -0.10 1.19 14 14 C -0.02 -0.36 11.30 -18.98 -0.21 -0.57 14 15 N -0.45 -7.45 10.54 -14.30 -0.15 -7.60 14 16 C 0.01 0.15 12.52 51.62 0.65 0.79 14 17 S 0.11 2.01 21.09 -107.50 -2.27 -0.26 14 18 H 0.29 7.43 8.31 -40.82 -0.34 7.09 14 19 H 0.42 6.74 8.95 -34.46 -0.31 6.43 14 20 H 0.17 2.44 8.06 -52.49 -0.42 2.02 14 21 H 0.20 1.99 8.06 -52.49 -0.42 1.57 14 LS Contribution 227.02 15.07 3.42 3.42 Total: -1.00 -33.58 227.02 -5.82 -39.40 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -0.64 Total: 4.20 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 0.49 Total: -21.23 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.77 Total: -50.90 kcal Atomic # 8 Polarization: -56.21 SS G_CDS: -2.04 Total: -58.26 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Atomic # 16 Polarization: 71.55 SS G_CDS: -2.80 Total: 68.75 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -33.58 -5.82 -39.40 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192939529.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.451 kcal (2) G-P(sol) polarization free energy of solvation -33.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds