Wall clock time and date at job start Thu Apr 9 2020 12:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00235 * 2 1 4 4 H 1.48507 * 109.47068 * 269.99725 * 3 2 1 5 5 H 1.48494 * 109.47346 * 29.99744 * 3 2 1 6 6 H 1.48498 * 109.47507 * 150.00194 * 3 2 1 7 7 C 1.37879 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00523 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99908 * 359.97438 * 7 2 1 10 10 O 1.42098 * 106.40220 * 66.46211 * 9 7 2 11 11 O 1.42105 * 106.40505 * 293.54524 * 9 7 2 12 12 N 1.65596 * 107.22025 * 180.02562 * 9 7 2 13 13 C 1.39672 * 119.99943 * 64.99828 * 12 9 7 14 14 C 1.34234 * 125.97099 * 135.00327 * 13 12 9 15 15 N 1.31789 * 115.53427 * 179.97438 * 14 13 12 16 16 C 1.29122 * 117.27052 * 0.02562 * 15 14 13 17 17 S 1.76153 * 109.27871 * 359.97438 * 16 15 14 18 18 H 0.97001 * 119.99723 * 0.02562 * 1 2 3 19 19 H 0.97003 * 119.99528 * 244.99958 * 12 9 7 20 20 H 1.07999 * 122.22949 * 359.69224 * 14 13 12 21 21 H 1.07992 * 125.35613 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4509 -2.7950 -1.2500 11 8 0.4517 -2.7956 1.2494 12 7 2.2482 -3.9355 -0.0005 13 6 3.0977 -4.1008 1.0957 14 6 3.3990 -5.2656 1.6911 15 7 4.2269 -5.1836 2.7132 16 6 4.6571 -4.0090 3.0334 17 16 3.9619 -2.8167 1.9389 18 1 -0.4850 0.8401 -0.0004 19 1 2.3169 -4.5325 -0.7619 20 1 2.9867 -6.2064 1.3577 21 1 5.3368 -3.7920 3.8440 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192939529.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:35 Heat of formation + Delta-G solvation = -75.314586 kcal Electronic energy + Delta-G solvation = -12545.282419 eV Core-core repulsion = 10059.427249 eV Total energy + Delta-G solvation = -2485.855169 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 233.992 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.41339 -37.62338 -36.38125 -36.27111 -35.22468 -29.66908 -28.37605 -25.80094 -21.79475 -21.16357 -20.07191 -19.07496 -18.47417 -17.74112 -16.89934 -16.18415 -15.81200 -15.40347 -15.03704 -14.75994 -14.05418 -13.47923 -13.15109 -13.03609 -12.97658 -12.67958 -12.61966 -12.30118 -11.74745 -11.27632 -11.03773 -10.56073 -10.04712 -9.49649 -8.81256 -7.56044 -0.31822 0.03127 0.26072 0.83131 1.35888 1.36659 1.53364 1.87032 2.18803 2.54850 2.69125 3.48459 3.55281 4.13468 4.36620 4.44866 4.65034 5.18558 5.25192 5.80780 5.94758 6.69817 6.72047 8.16348 Molecular weight = 233.99amu Principal moments of inertia in cm(-1) A = 0.032428 B = 0.012096 C = 0.009533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.237512 B = 2314.196237 C = 2936.363294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.988 3.012 4 H -0.255 1.255 5 H -0.263 1.263 6 H -0.240 1.240 7 C -1.024 5.024 8 H 0.126 0.874 9 S 2.696 3.304 10 O -1.025 7.025 11 O -1.024 7.024 12 N -1.022 6.022 13 C 0.025 3.975 14 C -0.003 4.003 15 N -0.470 5.470 16 C 0.057 3.943 17 S 0.069 5.931 18 H 0.302 0.698 19 H 0.432 0.568 20 H 0.194 0.806 21 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.702 -3.260 3.364 11.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.135 4.135 3 Si 0.806 3.194 4 H -0.179 1.179 5 H -0.187 1.187 6 H -0.163 1.163 7 C -1.159 5.159 8 H 0.144 0.856 9 S 2.798 3.202 10 O -1.016 7.016 11 O -1.013 7.013 12 N -0.773 5.773 13 C -0.194 4.194 14 C -0.158 4.158 15 N -0.183 5.183 16 C -0.243 4.243 17 S 0.317 5.683 18 H 0.112 0.888 19 H 0.270 0.730 20 H 0.211 0.789 21 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 9.752 -2.638 3.652 10.743 hybrid contribution -0.018 -0.050 -0.933 0.934 sum 9.734 -2.688 2.719 10.458 Atomic orbital electron populations 1.69972 1.08819 1.32667 1.40603 1.25940 0.95285 1.05092 0.87209 0.85149 0.79532 0.74576 0.80184 1.17937 1.18704 1.16320 1.30573 1.06943 1.10962 1.67441 0.85563 1.00929 0.72753 0.74342 0.72131 1.93357 1.73838 1.87974 1.46394 1.93354 1.73684 1.87693 1.46612 1.52945 1.49732 1.50584 1.24048 1.23116 1.01247 0.97572 0.97492 1.22143 1.01178 0.98880 0.93629 1.66405 1.12035 1.25305 1.14510 1.29978 1.02737 0.87898 1.03673 1.86050 1.39722 1.12677 1.29818 0.88818 0.72988 0.78920 0.73367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.12 13.19 21.45 0.28 -50.84 14 2 C 0.08 4.18 5.46 84.66 0.46 4.65 14 3 Si 0.99 39.14 29.54 68.60 2.03 41.17 14 4 H -0.26 -9.60 7.11 99.48 0.71 -8.90 14 5 H -0.26 -9.87 7.11 99.48 0.71 -9.16 14 6 H -0.24 -8.74 7.11 99.48 0.71 -8.04 14 7 C -1.02 -53.56 8.60 67.73 0.58 -52.98 14 8 H 0.13 5.91 6.73 -2.91 -0.02 5.89 14 9 S 2.70 142.23 4.92 -56.49 -0.28 141.95 14 10 O -1.03 -59.65 18.02 -128.00 -2.31 -61.96 14 11 O -1.02 -60.45 17.74 -128.00 -2.27 -62.72 14 12 N -1.02 -40.54 5.90 -53.27 -0.31 -40.85 14 13 C 0.02 0.91 6.79 82.53 0.56 1.47 14 14 C 0.00 -0.09 11.30 83.78 0.95 0.85 14 15 N -0.47 -13.88 10.54 -199.15 -2.10 -15.97 14 16 C 0.06 1.43 12.52 130.64 1.64 3.06 14 17 S 0.07 2.31 21.09 -56.49 -1.19 1.12 14 18 H 0.30 15.52 8.31 -92.71 -0.77 14.75 14 19 H 0.43 13.95 8.95 -96.75 -0.87 13.08 14 20 H 0.19 5.04 8.06 -2.91 -0.02 5.02 14 21 H 0.25 3.56 8.06 -2.91 -0.02 3.54 14 Total: -1.00 -73.33 227.02 -1.54 -74.88 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.42 Total: 16.18 kcal Atomic # 6 Polarization: -47.14 SS G_CDS: 4.19 Total: -42.95 kcal Atomic # 7 Polarization: -105.53 SS G_CDS: -2.13 Total: -107.66 kcal Atomic # 8 Polarization: -120.10 SS G_CDS: -4.58 Total: -124.68 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Atomic # 16 Polarization: 144.54 SS G_CDS: -1.47 Total: 143.07 kcal Total: -73.33 -1.54 -74.88 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192939529.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.439 kcal (2) G-P(sol) polarization free energy of solvation -73.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds