Wall clock time and date at job start Thu Apr 9 2020 12:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00343 * 2 1 4 4 H 1.48504 * 109.47379 * 265.00520 * 3 2 1 5 5 H 1.48497 * 109.47416 * 145.00418 * 3 2 1 6 6 H 1.48505 * 109.47246 * 25.00198 * 3 2 1 7 7 C 1.37877 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99925 * 185.27848 * 7 2 1 9 9 C 1.50698 * 119.99935 * 5.28428 * 7 2 1 10 10 H 1.09000 * 109.46982 * 305.31440 * 9 7 2 11 11 C 1.53003 * 109.47643 * 65.31996 * 9 7 2 12 12 Cl 1.80295 * 109.47223 * 186.27059 * 11 9 7 13 13 O 1.42910 * 109.47036 * 185.32091 * 9 7 2 14 14 C 1.42902 * 113.99888 * 149.99511 * 13 9 7 15 15 C 1.53000 * 109.46804 * 179.97438 * 14 13 9 16 16 H 1.08993 * 110.80614 * 308.63058 * 15 14 13 17 17 C 1.54818 * 110.90416 * 185.00224 * 15 14 13 18 18 C 1.54095 * 104.18380 * 220.92345 * 17 15 14 19 19 O 1.43744 * 107.29767 * 357.96921 * 18 17 15 20 20 C 1.44377 * 106.97175 * 26.51434 * 19 18 17 21 21 H 0.96995 * 119.99586 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46873 * 306.27477 * 11 9 7 23 23 H 1.09007 * 109.46502 * 66.26897 * 11 9 7 24 24 H 1.08994 * 109.47329 * 300.00275 * 14 13 9 25 25 H 1.09007 * 109.46787 * 60.00397 * 14 13 9 26 26 H 1.08994 * 110.48933 * 339.60100 * 17 15 14 27 27 H 1.09001 * 110.48384 * 102.24438 * 17 15 14 28 28 H 1.09002 * 109.87785 * 117.40067 * 18 17 15 29 29 H 1.09004 * 109.87587 * 238.54285 * 18 17 15 30 30 H 1.08996 * 110.61674 * 201.43460 * 20 19 18 31 31 H 1.09000 * 110.61907 * 78.44077 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.6024 1.9854 -1.3948 5 1 3.4900 1.4728 0.8029 6 1 1.3979 2.6808 0.5918 7 6 2.0045 -1.1941 -0.0005 8 1 3.0811 -1.1961 0.0855 9 6 1.2558 -2.4963 -0.1213 10 1 0.4950 -2.5515 0.6573 11 6 0.5864 -2.5744 -1.4949 12 17 -0.4576 -4.0423 -1.5722 13 8 2.1685 -3.5860 0.0264 14 6 1.5845 -4.7605 0.5935 15 6 2.6468 -5.8560 0.7037 16 1 3.1575 -5.9972 -0.2488 17 6 2.0221 -7.1836 1.1978 18 6 3.0575 -7.7403 2.1940 19 8 4.1704 -6.8307 2.2068 20 6 3.6589 -5.5336 1.8323 21 1 -0.4849 0.8400 0.0004 22 1 -0.0244 -1.6854 -1.6525 23 1 1.3515 -2.6314 -2.2692 24 1 1.1953 -4.5302 1.5852 25 1 0.7712 -5.1063 -0.0447 26 1 1.0730 -6.9952 1.6993 27 1 1.8844 -7.8735 0.3652 28 1 2.6179 -7.8022 3.1895 29 1 3.3891 -8.7273 1.8712 30 1 4.4614 -4.8979 1.4582 31 1 3.1555 -5.0613 2.6759 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224480422.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:53 Heat of formation + Delta-G solvation = -119.366732 kcal Electronic energy + Delta-G solvation = -14907.017013 eV Core-core repulsion = 12213.828460 eV Total energy + Delta-G solvation = -2693.188553 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 234.081 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.24283 -37.07097 -34.80897 -33.46277 -32.30062 -29.65505 -28.66511 -25.31219 -24.82408 -22.32420 -20.95778 -20.25212 -16.76534 -16.50436 -15.75293 -15.46226 -15.14496 -14.45486 -14.31055 -13.62986 -13.28758 -12.78633 -12.45605 -12.17476 -11.73337 -11.42528 -11.34099 -11.15558 -11.00913 -10.87394 -10.54629 -10.46539 -10.34657 -9.81883 -9.52773 -9.42110 -9.33896 -8.62177 -8.12905 -6.33580 -4.39084 3.17023 3.25191 3.28374 3.39514 4.07272 4.20516 4.60916 4.85484 4.97878 5.02160 5.18380 5.46283 5.49745 5.74719 5.83352 5.89288 6.00167 6.12034 6.19352 6.29611 6.32560 6.46918 6.51106 6.80072 7.01993 7.25208 7.62517 7.92265 8.35126 8.79698 9.28655 10.74533 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.026813 B = 0.007455 C = 0.006058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.025750 B = 3755.201647 C = 4620.790761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.909 3.091 4 H -0.276 1.276 5 H -0.270 1.270 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.073 0.927 9 C 0.214 3.786 10 H 0.037 0.963 11 C -0.025 4.025 12 Cl -0.249 7.249 13 O -0.387 6.387 14 C 0.060 3.940 15 C -0.116 4.116 16 H 0.089 0.911 17 C -0.150 4.150 18 C 0.049 3.951 19 O -0.386 6.386 20 C 0.056 3.944 21 H 0.269 0.731 22 H 0.112 0.888 23 H 0.074 0.926 24 H 0.037 0.963 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.646 -9.459 1.111 9.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.141 4.141 3 Si 0.736 3.264 4 H -0.202 1.202 5 H -0.195 1.195 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.091 0.909 9 C 0.157 3.843 10 H 0.054 0.946 11 C -0.088 4.088 12 Cl -0.223 7.223 13 O -0.307 6.307 14 C -0.017 4.017 15 C -0.135 4.135 16 H 0.107 0.893 17 C -0.188 4.188 18 C -0.028 4.028 19 O -0.305 6.305 20 C -0.020 4.020 21 H 0.079 0.921 22 H 0.130 0.870 23 H 0.092 0.908 24 H 0.055 0.945 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.814 -9.471 1.108 9.707 hybrid contribution -0.309 0.904 -0.094 0.960 sum 1.505 -8.567 1.014 8.757 Atomic orbital electron populations 1.69928 1.05989 1.27771 1.48848 1.25015 0.95068 0.99726 0.94326 0.86320 0.79703 0.81822 0.78602 1.20197 1.19514 1.20973 1.21039 0.94592 0.88579 1.51291 0.90911 1.19977 0.89059 0.84540 0.90739 0.94569 1.25805 0.93794 0.85822 1.03340 1.98603 1.74568 1.50266 1.98879 1.87834 1.38306 1.21679 1.82853 1.22625 0.94993 0.86497 0.97608 1.22678 0.96940 0.93812 1.00059 0.89266 1.22917 0.99401 0.96969 0.99537 1.23101 0.87409 0.93974 0.98363 1.88831 1.31594 1.19593 1.90514 1.23641 0.97547 0.84995 0.95851 0.92138 0.86987 0.90772 0.94458 0.91686 0.90515 0.90474 0.92705 0.90281 0.88382 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.83 11.95 55.43 0.66 -23.17 16 2 C 0.06 1.61 5.22 -17.82 -0.09 1.52 16 3 Si 0.91 20.24 29.54 -169.99 -5.02 15.21 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 5 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -13.69 8.82 -34.44 -0.30 -14.00 16 8 H 0.07 1.94 7.82 -52.49 -0.41 1.53 16 9 C 0.21 5.24 2.23 -27.88 -0.06 5.18 16 10 H 0.04 0.97 7.77 -51.93 -0.40 0.56 16 11 C -0.02 -0.57 6.22 37.16 0.23 -0.34 16 12 Cl -0.25 -5.01 26.16 -51.86 -1.36 -6.37 16 13 O -0.39 -8.72 9.92 -35.23 -0.35 -9.07 16 14 C 0.06 1.12 4.89 37.16 0.18 1.30 16 15 C -0.12 -1.82 3.38 -88.61 -0.30 -2.12 16 16 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 17 C -0.15 -1.90 6.60 -25.20 -0.17 -2.07 16 18 C 0.05 0.60 7.70 37.73 0.29 0.89 16 19 O -0.39 -6.00 11.52 -35.23 -0.41 -6.41 16 20 C 0.06 0.88 7.13 38.21 0.27 1.15 16 21 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 22 H 0.11 2.74 6.60 -51.93 -0.34 2.40 16 23 H 0.07 1.63 8.14 -51.92 -0.42 1.21 16 24 H 0.04 0.70 7.92 -51.93 -0.41 0.29 16 25 H 0.07 1.21 5.15 -51.93 -0.27 0.95 16 26 H 0.08 0.92 7.86 -51.93 -0.41 0.52 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 31 H 0.06 0.96 7.93 -51.93 -0.41 0.55 16 LS Contribution 270.81 15.07 4.08 4.08 Total: -1.00 -26.97 270.81 -6.67 -33.64 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -4.33 Total: 0.58 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: 0.05 Total: -8.49 kcal Atomic # 7 Polarization: -23.83 SS G_CDS: 0.66 Total: -23.17 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.76 Total: -15.48 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 17 Polarization: -5.01 SS G_CDS: -1.36 Total: -6.37 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -26.97 -6.67 -33.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224480422.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.727 kcal (2) G-P(sol) polarization free energy of solvation -26.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds