Wall clock time and date at job start Thu Apr 9 2020 12:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00343 * 2 1 4 4 H 1.48504 * 109.47379 * 265.00520 * 3 2 1 5 5 H 1.48497 * 109.47416 * 145.00418 * 3 2 1 6 6 H 1.48505 * 109.47246 * 25.00198 * 3 2 1 7 7 C 1.37877 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99925 * 185.27848 * 7 2 1 9 9 C 1.50698 * 119.99935 * 5.28428 * 7 2 1 10 10 H 1.09000 * 109.46982 * 305.31440 * 9 7 2 11 11 C 1.53003 * 109.47643 * 65.31996 * 9 7 2 12 12 Cl 1.80295 * 109.47223 * 186.27059 * 11 9 7 13 13 O 1.42910 * 109.47036 * 185.32091 * 9 7 2 14 14 C 1.42902 * 113.99888 * 149.99511 * 13 9 7 15 15 C 1.53000 * 109.46804 * 179.97438 * 14 13 9 16 16 H 1.08993 * 110.80614 * 308.63058 * 15 14 13 17 17 C 1.54818 * 110.90416 * 185.00224 * 15 14 13 18 18 C 1.54095 * 104.18380 * 220.92345 * 17 15 14 19 19 O 1.43744 * 107.29767 * 357.96921 * 18 17 15 20 20 C 1.44377 * 106.97175 * 26.51434 * 19 18 17 21 21 H 0.96995 * 119.99586 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46873 * 306.27477 * 11 9 7 23 23 H 1.09007 * 109.46502 * 66.26897 * 11 9 7 24 24 H 1.08994 * 109.47329 * 300.00275 * 14 13 9 25 25 H 1.09007 * 109.46787 * 60.00397 * 14 13 9 26 26 H 1.08994 * 110.48933 * 339.60100 * 17 15 14 27 27 H 1.09001 * 110.48384 * 102.24438 * 17 15 14 28 28 H 1.09002 * 109.87785 * 117.40067 * 18 17 15 29 29 H 1.09004 * 109.87587 * 238.54285 * 18 17 15 30 30 H 1.08996 * 110.61674 * 201.43460 * 20 19 18 31 31 H 1.09000 * 110.61907 * 78.44077 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.6024 1.9854 -1.3948 5 1 3.4900 1.4728 0.8029 6 1 1.3979 2.6808 0.5918 7 6 2.0045 -1.1941 -0.0005 8 1 3.0811 -1.1961 0.0855 9 6 1.2558 -2.4963 -0.1213 10 1 0.4950 -2.5515 0.6573 11 6 0.5864 -2.5744 -1.4949 12 17 -0.4576 -4.0423 -1.5722 13 8 2.1685 -3.5860 0.0264 14 6 1.5845 -4.7605 0.5935 15 6 2.6468 -5.8560 0.7037 16 1 3.1575 -5.9972 -0.2488 17 6 2.0221 -7.1836 1.1978 18 6 3.0575 -7.7403 2.1940 19 8 4.1704 -6.8307 2.2068 20 6 3.6589 -5.5336 1.8323 21 1 -0.4849 0.8400 0.0004 22 1 -0.0244 -1.6854 -1.6525 23 1 1.3515 -2.6314 -2.2692 24 1 1.1953 -4.5302 1.5852 25 1 0.7712 -5.1063 -0.0447 26 1 1.0730 -6.9952 1.6993 27 1 1.8844 -7.8735 0.3652 28 1 2.6179 -7.8022 3.1895 29 1 3.3891 -8.7273 1.8712 30 1 4.4614 -4.8979 1.4582 31 1 3.1555 -5.0613 2.6759 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224480422.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:53 Heat of formation + Delta-G solvation = -135.586238 kcal Electronic energy + Delta-G solvation = -14907.720343 eV Core-core repulsion = 12213.828460 eV Total energy + Delta-G solvation = -2693.891884 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 234.081 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.45255 -38.78211 -36.54025 -35.30069 -33.72620 -31.21029 -30.08450 -27.22076 -26.33847 -23.45761 -22.80508 -21.51402 -18.68009 -17.87043 -17.36944 -16.86082 -16.50764 -16.16277 -15.69184 -15.33400 -14.58735 -14.39677 -14.00480 -13.88100 -13.24962 -13.06799 -12.87515 -12.74233 -12.53750 -12.31626 -12.19965 -11.98968 -11.64271 -11.45221 -11.24167 -11.19084 -10.65542 -10.58182 -9.86873 -8.32310 -6.45820 1.40458 1.44141 1.53903 1.59851 2.34028 2.87486 3.01367 3.22063 3.65516 3.84834 4.05381 4.23494 4.33328 4.39816 4.48321 4.51796 4.64868 4.77283 4.83803 4.86691 4.91813 4.94252 5.10742 5.23522 5.33379 5.58954 5.89710 5.95931 6.48144 6.83163 7.27194 8.75516 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.026813 B = 0.007455 C = 0.006058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.025750 B = 3755.201647 C = 4620.790761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.024 3.976 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.269 1.269 6 H -0.279 1.279 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.220 3.780 10 H 0.009 0.991 11 C -0.017 4.017 12 Cl -0.224 7.224 13 O -0.399 6.399 14 C 0.059 3.941 15 C -0.115 4.115 16 H 0.085 0.915 17 C -0.143 4.143 18 C 0.043 3.957 19 O -0.402 6.402 20 C 0.057 3.943 21 H 0.272 0.728 22 H 0.094 0.906 23 H 0.080 0.920 24 H 0.033 0.967 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.816 -10.191 1.015 10.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.177 4.177 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.163 3.837 10 H 0.027 0.973 11 C -0.080 4.080 12 Cl -0.198 7.198 13 O -0.319 6.319 14 C -0.018 4.018 15 C -0.134 4.134 16 H 0.104 0.896 17 C -0.181 4.181 18 C -0.033 4.033 19 O -0.321 6.321 20 C -0.019 4.019 21 H 0.082 0.918 22 H 0.112 0.888 23 H 0.098 0.902 24 H 0.051 0.949 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.114 0.886 28 H 0.087 0.913 29 H 0.121 0.879 30 H 0.107 0.893 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.979 -10.227 1.013 10.466 hybrid contribution -0.405 1.020 -0.035 1.099 sum 1.574 -9.207 0.978 9.391 Atomic orbital electron populations 1.70012 1.07162 1.28706 1.49046 1.25744 0.95810 1.02635 0.93555 0.85372 0.78433 0.77882 0.78891 1.19324 1.19402 1.20379 1.21279 0.94388 0.90073 1.52345 0.91858 1.19722 0.88473 0.84835 0.90715 0.97337 1.25403 0.93888 0.86296 1.02412 1.98597 1.73782 1.48582 1.98835 1.87808 1.38478 1.22396 1.83265 1.22770 0.96108 0.85862 0.97035 1.22645 0.96299 0.94364 1.00046 0.89629 1.22927 0.99547 0.95332 1.00304 1.23343 0.86560 0.94221 0.99154 1.88813 1.33086 1.19641 1.90580 1.23539 0.97224 0.85416 0.95747 0.91845 0.88767 0.90176 0.94899 0.91556 0.89852 0.88595 0.91338 0.87938 0.89345 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.15 11.95 21.45 0.26 -48.90 16 2 C 0.02 1.23 5.22 84.65 0.44 1.67 16 3 Si 0.97 41.22 29.54 68.60 2.03 43.25 16 4 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 6 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 7 C -0.54 -29.14 8.82 25.60 0.23 -28.91 16 8 H 0.06 3.43 7.82 -2.91 -0.02 3.41 16 9 C 0.22 10.93 2.23 29.85 0.07 11.00 16 10 H 0.01 0.48 7.77 -2.39 -0.02 0.46 16 11 C -0.02 -0.77 6.22 71.98 0.45 -0.32 16 12 Cl -0.22 -8.81 26.16 -2.72 -0.07 -8.88 16 13 O -0.40 -18.15 9.92 -148.98 -1.48 -19.63 16 14 C 0.06 2.18 4.89 71.98 0.35 2.53 16 15 C -0.11 -3.48 3.38 -9.49 -0.03 -3.52 16 16 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 17 C -0.14 -3.28 6.60 31.59 0.21 -3.07 16 18 C 0.04 0.95 7.70 72.35 0.56 1.51 16 19 O -0.40 -11.89 11.52 -148.98 -1.72 -13.61 16 20 C 0.06 1.78 7.13 72.66 0.52 2.29 16 21 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 22 H 0.09 4.65 6.60 -2.39 -0.02 4.63 16 23 H 0.08 3.51 8.14 -2.38 -0.02 3.49 16 24 H 0.03 1.23 7.92 -2.39 -0.02 1.22 16 25 H 0.07 2.42 5.15 -2.38 -0.01 2.40 16 26 H 0.08 1.80 7.86 -2.39 -0.02 1.78 16 27 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 31 H 0.06 1.82 7.93 -2.39 -0.02 1.80 16 Total: -1.00 -56.54 270.81 2.91 -53.63 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 1.11 Total: 10.95 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 2.79 Total: -16.82 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.26 Total: -48.90 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -3.19 Total: -33.24 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 17 Polarization: -8.81 SS G_CDS: -0.07 Total: -8.88 kcal Total: -56.54 2.91 -53.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224480422.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.955 kcal (2) G-P(sol) polarization free energy of solvation -56.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds