Wall clock time and date at job start Thu Apr 9 2020 12:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47425 * 2 1 4 4 C 1.38256 * 119.99862 * 265.92707 * 3 2 1 5 5 C 1.38210 * 119.99821 * 179.97438 * 4 3 2 6 6 C 1.38248 * 120.00334 * 359.97438 * 5 4 3 7 7 C 1.38221 * 120.00003 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.00052 * 180.02562 * 7 6 5 9 9 C 1.38211 * 119.99897 * 85.89450 * 3 2 1 10 10 C 1.50697 * 120.00351 * 0.04824 * 9 3 2 11 11 N 1.46503 * 109.47083 * 81.30816 * 10 9 3 12 12 C 1.46503 * 120.00217 * 83.85660 * 11 10 9 13 13 C 1.36936 * 120.00055 * 263.85998 * 11 10 9 14 14 H 1.08006 * 119.99534 * 321.70950 * 13 11 10 15 15 C 1.38814 * 120.00110 * 141.71088 * 13 11 10 16 16 N 1.31621 * 119.99698 * 163.22912 * 15 13 11 17 17 Si 1.86799 * 119.99942 * 343.22498 * 15 13 11 18 18 H 1.48497 * 109.47134 * 92.56062 * 17 15 13 19 19 H 1.48500 * 109.47026 * 212.56202 * 17 15 13 20 20 H 1.48500 * 109.47107 * 332.56118 * 17 15 13 21 21 H 1.08998 * 109.47037 * 175.34647 * 1 2 3 22 22 H 1.09003 * 109.47244 * 295.34818 * 1 2 3 23 23 H 1.08996 * 109.46926 * 55.34539 * 1 2 3 24 24 H 1.08996 * 109.47197 * 239.99503 * 2 1 3 25 25 H 1.09003 * 109.46879 * 119.99704 * 2 1 3 26 26 H 1.08003 * 119.99775 * 0.26888 * 4 3 2 27 27 H 1.08004 * 119.99583 * 179.97438 * 5 4 3 28 28 H 1.07998 * 120.00401 * 180.02562 * 6 5 4 29 29 H 1.08997 * 109.47064 * 82.95220 * 8 7 6 30 30 H 1.09003 * 109.47167 * 202.95049 * 8 7 6 31 31 H 1.09000 * 109.47294 * 322.95447 * 8 7 6 32 32 H 1.09004 * 109.47518 * 201.30599 * 10 9 3 33 33 H 1.09002 * 109.47513 * 321.30910 * 10 9 3 34 34 H 1.08998 * 109.46812 * 86.98553 * 12 11 10 35 35 H 1.08994 * 109.47157 * 206.98747 * 12 11 10 36 36 H 1.09002 * 109.47032 * 326.99372 * 12 11 10 37 37 H 0.96999 * 119.99483 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3430 2.0442 -1.1943 5 6 2.8033 3.3474 -1.1944 6 6 2.9526 4.0278 -0.0002 7 6 2.6411 3.4050 1.1937 8 6 2.8032 4.1469 2.4954 9 6 2.1820 2.1009 1.1939 10 6 1.8438 1.4213 2.4957 11 7 2.9654 0.5751 2.9107 12 6 4.0920 1.1591 3.6427 13 6 2.9607 -0.7618 2.6142 14 1 2.0396 -1.3234 2.6670 15 6 4.1397 -1.3952 2.2459 16 7 4.2199 -2.7085 2.2813 17 14 5.6122 -0.3838 1.7001 18 1 6.4827 -0.1052 2.8706 19 1 6.3817 -1.1403 0.6799 20 1 5.1430 0.8983 1.1160 21 1 -0.3633 -1.0243 -0.0834 22 1 -0.3634 0.4400 0.9287 23 1 -0.3633 0.5843 -0.8453 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.2215 1.5143 -2.1276 27 1 3.0464 3.8342 -2.1273 28 1 3.3119 5.0463 -0.0003 29 1 1.9238 4.7660 2.6727 30 1 2.9141 3.4314 3.3101 31 1 3.6890 4.7801 2.4448 32 1 1.6547 2.1747 3.2605 33 1 0.9537 0.8060 2.3640 34 1 3.8718 1.1572 4.7102 35 1 4.9906 0.5710 3.4560 36 1 4.2518 2.1836 3.3066 37 1 5.0439 -3.1511 2.0242 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237325854.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:01 Heat of formation + Delta-G solvation = 40.758103 kcal Electronic energy + Delta-G solvation = -17283.757428 eV Core-core repulsion = 14833.497015 eV Total energy + Delta-G solvation = -2450.260413 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.36851 -35.76965 -33.91230 -32.36373 -31.19964 -29.28717 -27.19710 -25.85712 -25.70153 -23.05526 -21.81611 -19.84499 -19.52761 -16.96171 -15.84105 -15.42025 -15.04094 -14.53565 -14.09947 -13.30143 -13.10616 -13.02567 -12.81908 -12.63240 -12.33403 -12.28017 -12.13297 -11.87663 -11.48579 -11.27222 -10.92803 -10.70607 -10.48330 -10.38305 -10.12953 -9.91134 -9.71805 -9.55344 -8.57922 -8.01510 -7.90661 -6.81615 -6.02824 -3.46300 1.93480 1.99208 3.29718 3.47498 3.57570 4.27468 4.50331 5.17575 5.28516 5.33661 5.35936 5.43693 5.59582 5.73626 5.80354 5.88683 5.91261 6.06855 6.09480 6.10532 6.22258 6.29334 6.33901 6.44040 6.53689 6.60981 6.65409 6.69048 6.74357 6.86240 7.01478 7.15876 7.30865 7.52414 7.68811 8.01709 8.30873 8.92235 9.65099 10.07363 11.11042 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.021505 B = 0.012241 C = 0.010670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.691988 B = 2286.788465 C = 2623.589873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.124 4.124 3 C -0.045 4.045 4 C -0.135 4.135 5 C -0.131 4.131 6 C -0.137 4.137 7 C -0.089 4.089 8 C -0.119 4.119 9 C -0.085 4.085 10 C 0.175 3.825 11 N -0.603 5.603 12 C 0.105 3.895 13 C -0.264 4.264 14 H 0.085 0.915 15 C 0.037 3.963 16 N -0.900 5.900 17 Si 0.884 3.116 18 H -0.288 1.288 19 H -0.305 1.305 20 H -0.263 1.263 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.040 0.960 24 H 0.055 0.945 25 H 0.137 0.863 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.017 0.983 35 H 0.044 0.956 36 H 0.034 0.966 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.152 11.130 -3.172 12.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.161 4.161 3 C -0.046 4.046 4 C -0.153 4.153 5 C -0.150 4.150 6 C -0.155 4.155 7 C -0.090 4.090 8 C -0.175 4.175 9 C -0.088 4.088 10 C 0.050 3.950 11 N -0.326 5.326 12 C -0.039 4.039 13 C -0.392 4.392 14 H 0.102 0.898 15 C -0.164 4.164 16 N -0.541 5.541 17 Si 0.715 3.285 18 H -0.216 1.216 19 H -0.233 1.233 20 H -0.187 1.187 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.059 0.941 24 H 0.074 0.926 25 H 0.154 0.846 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.036 0.964 35 H 0.062 0.938 36 H 0.052 0.948 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.058 10.949 -3.159 12.097 hybrid contribution 1.204 0.559 -0.695 1.498 sum -2.854 11.508 -3.854 12.467 Atomic orbital electron populations 1.21664 0.96040 1.00808 1.00823 1.21253 0.94961 0.93069 1.06770 1.19801 0.96711 0.96047 0.92048 1.20989 1.01644 0.95098 0.97546 1.20885 1.01663 0.95138 0.97309 1.20797 1.02945 0.99299 0.92445 1.19717 1.00057 0.94435 0.94799 1.20923 1.01120 0.99889 0.95560 1.20780 0.98143 0.92668 0.97209 1.20103 0.92155 0.92988 0.89764 1.44116 1.20515 1.05611 1.62377 1.21445 0.91419 0.96326 0.94707 1.18693 0.96694 0.82163 1.41641 0.89795 1.25494 0.98417 0.95129 0.97348 1.69805 1.27483 1.07741 1.49032 0.86849 0.82827 0.81107 0.77667 1.21621 1.23324 1.18725 0.92925 0.92930 0.94076 0.92648 0.84581 0.87109 0.87241 0.87289 0.91881 0.90556 0.92357 0.93315 0.91350 0.96445 0.93795 0.94761 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.78 37.16 0.36 -1.87 16 2 C -0.12 -2.45 5.39 -27.88 -0.15 -2.60 16 3 C -0.05 -0.90 5.13 -104.62 -0.54 -1.43 16 4 C -0.13 -2.42 9.69 -39.58 -0.38 -2.81 16 5 C -0.13 -2.17 10.05 -39.59 -0.40 -2.57 16 6 C -0.14 -2.26 9.73 -39.58 -0.39 -2.65 16 7 C -0.09 -1.58 5.88 -104.62 -0.62 -2.20 16 8 C -0.12 -1.74 8.92 36.01 0.32 -1.42 16 9 C -0.09 -1.67 5.45 -104.63 -0.57 -2.24 16 10 C 0.18 3.49 4.89 -5.19 -0.03 3.46 16 11 N -0.60 -14.03 2.49 -182.50 -0.45 -14.48 16 12 C 0.11 2.31 9.06 59.85 0.54 2.85 16 13 C -0.26 -7.02 7.07 -15.06 -0.11 -7.13 16 14 H 0.08 2.38 7.73 -52.48 -0.41 1.98 16 15 C 0.04 1.06 5.38 -17.43 -0.09 0.96 16 16 N -0.90 -26.84 13.97 55.49 0.78 -26.06 16 17 Si 0.88 22.83 24.79 -169.99 -4.21 18.62 16 18 H -0.29 -7.24 6.63 56.52 0.37 -6.87 16 19 H -0.30 -8.04 7.11 56.52 0.40 -7.64 16 20 H -0.26 -6.88 7.10 56.52 0.40 -6.48 16 21 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.05 0.84 6.77 -51.93 -0.35 0.49 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 1.07 8.06 -51.93 -0.42 0.65 16 25 H 0.14 3.14 3.43 -51.93 -0.18 2.96 16 26 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 27 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 28 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.18 4.12 -51.93 -0.21 0.96 16 31 H 0.06 0.78 8.13 -51.93 -0.42 0.35 16 32 H 0.05 0.86 6.05 -51.93 -0.31 0.55 16 33 H 0.07 1.35 5.68 -51.93 -0.30 1.05 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.04 1.05 3.01 -51.93 -0.16 0.90 16 36 H 0.03 0.68 5.90 -51.93 -0.31 0.37 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 282.42 15.07 4.26 4.26 Total: -1.00 -29.57 282.42 -6.86 -36.43 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.18 Total: 0.89 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -2.04 Total: -19.65 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.32 Total: -40.54 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.21 Total: 18.62 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.57 -6.86 -36.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237325854.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.187 kcal (2) G-P(sol) polarization free energy of solvation -29.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds