Wall clock time and date at job start Thu Apr 9 2020 12:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47425 * 2 1 4 4 C 1.38256 * 119.99862 * 265.92707 * 3 2 1 5 5 C 1.38210 * 119.99821 * 179.97438 * 4 3 2 6 6 C 1.38248 * 120.00334 * 359.97438 * 5 4 3 7 7 C 1.38221 * 120.00003 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.00052 * 180.02562 * 7 6 5 9 9 C 1.38211 * 119.99897 * 85.89450 * 3 2 1 10 10 C 1.50697 * 120.00351 * 0.04824 * 9 3 2 11 11 N 1.46503 * 109.47083 * 81.30816 * 10 9 3 12 12 C 1.46503 * 120.00217 * 83.85660 * 11 10 9 13 13 C 1.36936 * 120.00055 * 263.85998 * 11 10 9 14 14 H 1.08006 * 119.99534 * 321.70950 * 13 11 10 15 15 C 1.38814 * 120.00110 * 141.71088 * 13 11 10 16 16 N 1.31621 * 119.99698 * 163.22912 * 15 13 11 17 17 Si 1.86799 * 119.99942 * 343.22498 * 15 13 11 18 18 H 1.48497 * 109.47134 * 92.56062 * 17 15 13 19 19 H 1.48500 * 109.47026 * 212.56202 * 17 15 13 20 20 H 1.48500 * 109.47107 * 332.56118 * 17 15 13 21 21 H 1.08998 * 109.47037 * 175.34647 * 1 2 3 22 22 H 1.09003 * 109.47244 * 295.34818 * 1 2 3 23 23 H 1.08996 * 109.46926 * 55.34539 * 1 2 3 24 24 H 1.08996 * 109.47197 * 239.99503 * 2 1 3 25 25 H 1.09003 * 109.46879 * 119.99704 * 2 1 3 26 26 H 1.08003 * 119.99775 * 0.26888 * 4 3 2 27 27 H 1.08004 * 119.99583 * 179.97438 * 5 4 3 28 28 H 1.07998 * 120.00401 * 180.02562 * 6 5 4 29 29 H 1.08997 * 109.47064 * 82.95220 * 8 7 6 30 30 H 1.09003 * 109.47167 * 202.95049 * 8 7 6 31 31 H 1.09000 * 109.47294 * 322.95447 * 8 7 6 32 32 H 1.09004 * 109.47518 * 201.30599 * 10 9 3 33 33 H 1.09002 * 109.47513 * 321.30910 * 10 9 3 34 34 H 1.08998 * 109.46812 * 86.98553 * 12 11 10 35 35 H 1.08994 * 109.47157 * 206.98747 * 12 11 10 36 36 H 1.09002 * 109.47032 * 326.99372 * 12 11 10 37 37 H 0.96999 * 119.99483 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3430 2.0442 -1.1943 5 6 2.8033 3.3474 -1.1944 6 6 2.9526 4.0278 -0.0002 7 6 2.6411 3.4050 1.1937 8 6 2.8032 4.1469 2.4954 9 6 2.1820 2.1009 1.1939 10 6 1.8438 1.4213 2.4957 11 7 2.9654 0.5751 2.9107 12 6 4.0920 1.1591 3.6427 13 6 2.9607 -0.7618 2.6142 14 1 2.0396 -1.3234 2.6670 15 6 4.1397 -1.3952 2.2459 16 7 4.2199 -2.7085 2.2813 17 14 5.6122 -0.3838 1.7001 18 1 6.4827 -0.1052 2.8706 19 1 6.3817 -1.1403 0.6799 20 1 5.1430 0.8983 1.1160 21 1 -0.3633 -1.0243 -0.0834 22 1 -0.3634 0.4400 0.9287 23 1 -0.3633 0.5843 -0.8453 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.2215 1.5143 -2.1276 27 1 3.0464 3.8342 -2.1273 28 1 3.3119 5.0463 -0.0003 29 1 1.9238 4.7660 2.6727 30 1 2.9141 3.4314 3.3101 31 1 3.6890 4.7801 2.4448 32 1 1.6547 2.1747 3.2605 33 1 0.9537 0.8060 2.3640 34 1 3.8718 1.1572 4.7102 35 1 4.9906 0.5710 3.4560 36 1 4.2518 2.1836 3.3066 37 1 5.0439 -3.1511 2.0242 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237325854.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:01 Heat of formation + Delta-G solvation = 24.510312 kcal Electronic energy + Delta-G solvation = -17284.461985 eV Core-core repulsion = 14833.497015 eV Total energy + Delta-G solvation = -2450.964970 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.76397 -37.51715 -35.30009 -34.12581 -32.89294 -30.71462 -28.65832 -27.63466 -27.17452 -24.54111 -23.50725 -21.26423 -20.98687 -18.97193 -17.51114 -16.90805 -16.66750 -16.06348 -15.65076 -14.92255 -14.66689 -14.44346 -14.36619 -14.29327 -14.09315 -13.65101 -13.58810 -13.20060 -13.17683 -12.70957 -12.52298 -12.21042 -12.17499 -12.11850 -11.70000 -11.58278 -11.40363 -11.31479 -10.63845 -9.36200 -9.30787 -8.71972 -8.18214 -5.56604 0.58940 0.62967 1.23747 1.38037 1.49589 2.39509 2.89653 3.10793 3.57675 4.00556 4.03293 4.16206 4.27768 4.37915 4.45971 4.51469 4.54587 4.66232 4.71095 4.79612 4.84665 4.89895 4.94028 4.98073 5.00695 5.10629 5.20333 5.30240 5.35925 5.47967 5.69031 5.72876 5.82513 5.93031 6.08049 6.16723 6.32838 6.97417 7.61612 8.05125 9.00016 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.021505 B = 0.012241 C = 0.010670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.691988 B = 2286.788465 C = 2623.589873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.123 4.123 3 C -0.068 4.068 4 C -0.151 4.151 5 C -0.128 4.128 6 C -0.140 4.140 7 C -0.095 4.095 8 C -0.117 4.117 9 C -0.110 4.110 10 C 0.178 3.822 11 N -0.615 5.615 12 C 0.103 3.897 13 C -0.232 4.232 14 H 0.055 0.945 15 C -0.014 4.014 16 N -0.948 5.948 17 Si 0.939 3.061 18 H -0.278 1.278 19 H -0.318 1.318 20 H -0.266 1.266 21 H 0.056 0.944 22 H 0.052 0.948 23 H 0.057 0.943 24 H 0.047 0.953 25 H 0.100 0.900 26 H 0.122 0.878 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.034 0.966 35 H 0.023 0.977 36 H 0.058 0.942 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.150 14.373 -3.573 15.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.160 4.160 3 C -0.069 4.069 4 C -0.169 4.169 5 C -0.146 4.146 6 C -0.158 4.158 7 C -0.096 4.096 8 C -0.173 4.173 9 C -0.113 4.113 10 C 0.054 3.946 11 N -0.339 5.339 12 C -0.041 4.041 13 C -0.361 4.361 14 H 0.073 0.927 15 C -0.210 4.210 16 N -0.593 5.593 17 Si 0.771 3.229 18 H -0.205 1.205 19 H -0.248 1.248 20 H -0.190 1.190 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.118 0.882 26 H 0.140 0.860 27 H 0.159 0.841 28 H 0.159 0.841 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.041 0.959 36 H 0.077 0.923 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.070 14.242 -3.548 15.231 hybrid contribution 1.073 -0.336 -0.587 1.268 sum -2.997 13.906 -4.135 14.814 Atomic orbital electron populations 1.21582 0.93804 1.01476 1.01567 1.21096 0.97070 0.93395 1.04429 1.19933 0.97886 0.95872 0.93207 1.21224 1.02060 0.96176 0.97419 1.21302 0.99913 0.94428 0.98924 1.21215 1.02045 1.00711 0.91854 1.20114 0.98853 0.93832 0.96788 1.20960 1.03050 0.99853 0.93465 1.20715 1.00047 0.94002 0.96493 1.20119 0.90445 0.92927 0.91110 1.44224 1.21641 1.04918 1.63119 1.21506 0.89937 0.97032 0.95620 1.18534 0.95186 0.83698 1.38711 0.92710 1.25938 1.00713 0.95627 0.98766 1.69909 1.28045 1.09157 1.52143 0.85959 0.80589 0.79302 0.77059 1.20544 1.24806 1.19039 0.92481 0.92867 0.92347 0.93380 0.88178 0.85959 0.84131 0.84103 0.89581 0.91533 0.90593 0.90832 0.92208 0.94775 0.95897 0.92330 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 9.78 71.98 0.70 -3.43 16 2 C -0.12 -4.92 5.39 29.85 0.16 -4.76 16 3 C -0.07 -2.63 5.13 -19.87 -0.10 -2.73 16 4 C -0.15 -5.12 9.69 22.27 0.22 -4.90 16 5 C -0.13 -3.75 10.05 22.27 0.22 -3.52 16 6 C -0.14 -4.05 9.73 22.27 0.22 -3.83 16 7 C -0.10 -3.04 5.88 -19.86 -0.12 -3.16 16 8 C -0.12 -2.93 8.92 71.24 0.64 -2.30 16 9 C -0.11 -4.12 5.45 -19.87 -0.11 -4.23 16 10 C 0.18 6.89 4.89 85.63 0.42 7.30 16 11 N -0.62 -28.23 2.49 -731.29 -1.82 -30.05 16 12 C 0.10 4.31 9.06 127.77 1.16 5.46 16 13 C -0.23 -12.60 7.07 84.03 0.59 -12.00 16 14 H 0.06 3.27 7.73 -2.91 -0.02 3.24 16 15 C -0.01 -0.80 5.38 84.86 0.46 -0.35 16 16 N -0.95 -58.59 13.97 21.65 0.30 -58.28 16 17 Si 0.94 47.97 24.79 68.60 1.70 49.67 16 18 H -0.28 -13.52 6.63 99.48 0.66 -12.86 16 19 H -0.32 -16.76 7.11 99.48 0.71 -16.05 16 20 H -0.27 -13.51 7.10 99.48 0.71 -12.80 16 21 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.05 1.69 6.77 -2.39 -0.02 1.68 16 23 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.05 1.91 8.06 -2.39 -0.02 1.89 16 25 H 0.10 4.78 3.43 -2.39 -0.01 4.77 16 26 H 0.12 3.73 8.06 -2.91 -0.02 3.70 16 27 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 28 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 29 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.07 1.80 4.12 -2.39 -0.01 1.79 16 31 H 0.08 1.65 8.13 -2.39 -0.02 1.63 16 32 H 0.07 2.44 6.05 -2.39 -0.01 2.42 16 33 H 0.06 2.37 5.68 -2.39 -0.01 2.35 16 34 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.02 1.06 3.01 -2.39 -0.01 1.05 16 36 H 0.06 2.15 5.90 -2.39 -0.01 2.13 16 37 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -64.38 282.42 5.65 -58.73 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 1.01 Total: 12.39 kcal Atomic # 6 Polarization: -36.91 SS G_CDS: 4.46 Total: -32.45 kcal Atomic # 7 Polarization: -86.82 SS G_CDS: -1.52 Total: -88.34 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 1.70 Total: 49.67 kcal Total: -64.38 5.65 -58.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237325854.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.236 kcal (2) G-P(sol) polarization free energy of solvation -64.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds