Wall clock time and date at job start Thu Apr 9 2020 12:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47405 * 240.00239 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.53938 * 113.74184 * 278.73847 * 9 7 2 11 11 N 1.47813 * 86.03931 * 222.08648 * 10 9 7 12 12 S 1.65596 * 134.45968 * 204.64416 * 11 10 9 13 13 O 1.42102 * 104.27495 * 25.93883 * 12 11 10 14 14 O 1.42100 * 104.27612 * 153.79670 * 12 11 10 15 15 C 1.81393 * 104.45231 * 269.86716 * 12 11 10 16 16 C 1.53003 * 109.47501 * 180.02562 * 15 12 11 17 17 N 1.46897 * 109.47281 * 179.97438 * 16 15 12 18 18 C 1.47586 * 91.04834 * 24.55241 * 11 10 9 19 19 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 20 20 H 1.09000 * 112.94525 * 50.33174 * 9 7 2 21 21 H 1.09002 * 113.76959 * 336.35006 * 10 9 7 22 22 H 1.08998 * 113.76918 * 107.75067 * 10 9 7 23 23 H 1.09003 * 109.47308 * 300.00246 * 15 12 11 24 24 H 1.09002 * 109.47203 * 60.00005 * 15 12 11 25 25 H 1.08998 * 109.46608 * 300.00175 * 16 15 12 26 26 H 1.09002 * 109.46913 * 59.99796 * 16 15 12 27 27 H 1.00900 * 110.99753 * 179.97438 * 17 16 15 28 28 H 1.00899 * 110.99921 * 303.95800 * 17 16 15 29 29 H 1.09008 * 113.76654 * 221.15420 * 18 11 10 30 30 H 1.08993 * 113.87299 * 89.76897 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 0.7552 -2.9298 1.3906 11 7 1.1912 -4.2905 1.0121 12 16 0.7617 -5.8189 1.4828 13 8 -0.5764 -5.6815 1.9408 14 8 1.0717 -6.6317 0.3592 15 6 1.8726 -6.1954 2.8665 16 6 1.5714 -7.5993 3.3950 17 7 2.4714 -7.9044 4.5152 18 6 2.1609 -3.7401 0.0451 19 1 -0.4849 0.8400 0.0004 20 1 0.4839 -2.5462 -0.7747 21 1 1.3259 -2.4984 2.2130 22 1 -0.3225 -2.8333 1.5223 23 1 2.9067 -6.1503 2.5249 24 1 1.7209 -5.4667 3.6629 25 1 0.5373 -7.6448 3.7365 26 1 1.7234 -8.3277 2.5985 27 1 2.2919 -8.8269 4.8823 28 1 3.4372 -7.8058 4.2402 29 1 2.2033 -4.2895 -0.8954 30 1 3.1460 -3.5469 0.4697 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238922737.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:03 Heat of formation + Delta-G solvation = -41.655817 kcal Electronic energy + Delta-G solvation = -14845.313205 eV Core-core repulsion = 12189.830907 eV Total energy + Delta-G solvation = -2655.482298 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 234.082 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.01394 -36.67943 -35.69394 -35.48684 -32.59824 -29.51277 -28.26616 -25.15675 -24.53429 -22.65111 -19.74874 -18.25134 -17.09763 -16.87321 -16.35445 -16.04201 -15.33878 -14.72457 -14.50448 -14.24478 -13.81426 -13.07786 -12.75988 -12.46039 -11.79282 -11.75286 -11.69341 -11.66655 -11.51698 -11.26024 -10.97855 -10.64927 -10.54278 -10.32539 -9.27809 -9.06398 -9.04008 -8.58859 -8.18211 -6.13565 -4.19542 0.58495 3.05552 3.27006 3.33095 3.34591 4.08035 4.33718 4.35285 4.46017 4.57188 4.79887 5.14099 5.18046 5.42748 5.64129 5.76629 6.19743 6.25081 6.36533 6.43869 6.73382 6.74318 6.91043 7.09919 7.52061 7.64323 7.84261 8.22116 8.82953 9.46285 10.95764 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.047004 B = 0.006168 C = 0.005938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.546067 B = 4538.357855 C = 4714.130151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.067 3.933 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.062 0.938 9 C 0.041 3.959 10 C 0.129 3.871 11 N -1.031 6.031 12 S 2.618 3.382 13 O -0.958 6.958 14 O -0.965 6.965 15 C -0.645 4.645 16 C 0.074 3.926 17 N -0.843 5.843 18 C 0.119 3.881 19 H 0.265 0.735 20 H 0.065 0.935 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.124 0.876 24 H 0.136 0.864 25 H 0.085 0.915 26 H 0.041 0.959 27 H 0.344 0.656 28 H 0.344 0.656 29 H 0.065 0.935 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.906 -10.725 5.576 13.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.081 0.919 9 C 0.019 3.981 10 C 0.005 3.995 11 N -0.872 5.872 12 S 2.712 3.288 13 O -0.949 6.949 14 O -0.956 6.956 15 C -0.772 4.772 16 C -0.059 4.059 17 N -0.374 5.374 18 C -0.006 4.006 19 H 0.075 0.925 20 H 0.083 0.917 21 H 0.089 0.911 22 H 0.087 0.913 23 H 0.143 0.857 24 H 0.154 0.846 25 H 0.104 0.896 26 H 0.059 0.941 27 H 0.157 0.843 28 H 0.156 0.844 29 H 0.084 0.916 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.651 -10.781 5.658 12.711 hybrid contribution 1.434 0.236 0.126 1.459 sum 5.085 -10.545 5.785 13.058 Atomic orbital electron populations 1.69947 1.06040 1.27231 1.48893 1.25039 0.94854 0.99321 0.94423 0.86610 0.79567 0.82818 0.78699 1.20117 1.21268 1.20183 1.20993 0.92970 0.89801 1.52201 0.91935 1.20514 0.94067 0.90825 0.92708 1.23328 0.99519 0.74928 1.01753 1.60433 1.53744 1.19846 1.53192 1.04772 0.75486 0.73183 0.75344 1.93561 1.32479 1.85461 1.83352 1.93538 1.86009 1.68502 1.47551 1.31000 1.18501 1.05738 1.21924 1.21399 0.98710 0.92649 0.93115 1.58682 1.08445 1.35130 1.35108 1.23095 0.92821 0.94930 0.89741 0.92545 0.91667 0.91084 0.91273 0.85734 0.84607 0.89624 0.94105 0.84290 0.84378 0.91625 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.29 13.29 55.43 0.74 -23.55 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.52 -13.09 8.77 -34.44 -0.30 -13.39 16 8 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 9 C 0.04 0.95 3.60 -90.84 -0.33 0.62 16 10 C 0.13 2.78 8.48 -2.84 -0.02 2.76 16 11 N -1.03 -19.68 4.00 -118.61 -0.47 -20.16 16 12 S 2.62 44.78 5.93 -107.50 -0.64 44.15 16 13 O -0.96 -19.34 18.02 -57.54 -1.04 -20.38 16 14 O -0.97 -18.67 18.02 -57.54 -1.04 -19.71 16 15 C -0.64 -8.27 6.44 37.16 0.24 -8.03 16 16 C 0.07 0.85 6.79 -3.82 -0.03 0.82 16 17 N -0.84 -8.30 9.62 -10.37 -0.10 -8.40 16 18 C 0.12 2.30 8.47 -2.96 -0.03 2.28 16 19 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 20 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 21 H 0.07 1.45 8.09 -51.93 -0.42 1.03 16 22 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 23 H 0.12 1.40 8.14 -51.92 -0.42 0.98 16 24 H 0.14 1.72 8.14 -51.92 -0.42 1.30 16 25 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.34 2.58 9.08 -39.29 -0.36 2.22 16 28 H 0.34 2.90 8.99 -39.29 -0.35 2.55 16 29 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 30 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 LS Contribution 275.13 15.07 4.15 4.15 Total: -1.00 -31.27 275.13 -8.04 -39.31 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -4.05 Total: 2.92 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -0.56 Total: -13.29 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: 0.16 Total: -52.11 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -2.07 Total: -40.09 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: 44.78 SS G_CDS: -0.64 Total: 44.15 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.27 -8.04 -39.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238922737.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.342 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds