Wall clock time and date at job start Thu Apr 9 2020 12:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30814 * 1 3 3 Si 1.86797 * 119.99988 * 2 1 4 4 H 1.48501 * 109.46931 * 85.18992 * 3 2 1 5 5 H 1.48496 * 109.46905 * 205.18563 * 3 2 1 6 6 H 1.48498 * 109.47355 * 325.19110 * 3 2 1 7 7 C 1.40023 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99851 * 197.50042 * 7 2 1 9 9 C 1.40859 * 120.00003 * 17.50242 * 7 2 1 10 10 C 1.40998 * 120.11280 * 25.28593 * 9 7 2 11 11 C 1.36110 * 119.92187 * 179.78014 * 10 9 7 12 12 C 1.40262 * 120.15713 * 0.47360 * 11 10 9 13 13 C 1.47307 * 119.87757 * 179.75950 * 12 11 10 14 14 C 1.33410 * 125.98374 * 244.70283 * 13 12 11 15 15 C 1.51195 * 108.02892 * 179.97438 * 14 13 12 16 16 O 1.43986 * 105.86412 * 342.83550 * 15 14 13 17 17 C 1.43993 * 104.04393 * 27.51199 * 16 15 14 18 18 C 1.40027 * 120.23554 * 359.77622 * 12 11 10 19 19 C 1.36469 * 120.07050 * 359.97438 * 18 12 11 20 20 F 1.35106 * 120.07799 * 179.97438 * 19 18 12 21 21 H 0.96995 * 120.00083 * 0.02562 * 1 2 3 22 22 H 1.08000 * 120.03766 * 0.02562 * 10 9 7 23 23 H 1.07996 * 119.91937 * 180.20619 * 11 10 9 24 24 H 1.08004 * 125.98122 * 0.02562 * 14 13 12 25 25 H 1.08998 * 110.31244 * 223.65430 * 15 14 13 26 26 H 1.08994 * 110.06113 * 101.89452 * 15 14 13 27 27 H 1.09004 * 110.17751 * 213.21425 * 17 16 15 28 28 H 1.09000 * 110.24874 * 91.42029 * 17 16 15 29 29 H 1.07998 * 119.96494 * 180.02562 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3879 2.1051 1.3952 5 1 3.5868 1.4129 -0.5958 6 1 1.4941 2.6212 -0.7992 7 6 2.0082 -1.2127 0.0005 8 1 3.0507 -1.2342 0.2818 9 6 1.3528 -2.4044 -0.3658 10 6 0.2264 -2.3607 -1.2127 11 6 -0.4013 -3.5150 -1.5679 12 6 0.0638 -4.7472 -1.0853 13 6 -0.6234 -5.9923 -1.4694 14 6 -1.2742 -6.8148 -0.6449 15 6 -1.8226 -7.9611 -1.4642 16 8 -1.7878 -7.5181 -2.8337 17 6 -0.7080 -6.5660 -2.8656 18 6 1.1786 -4.7979 -0.2396 19 6 1.8182 -3.6467 0.1184 20 9 2.8936 -3.6954 0.9348 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1355 -1.4127 -1.5824 23 1 -1.2620 -3.4818 -2.2193 24 1 -1.3897 -6.6842 0.4210 25 1 -2.8475 -8.1825 -1.1665 26 1 -1.1959 -8.8440 -1.3384 27 1 -0.9247 -5.7757 -3.5844 28 1 0.2263 -7.0638 -3.1250 29 1 1.5333 -5.7490 0.1290 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239480470.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:14 Heat of formation + Delta-G solvation = -71.346841 kcal Electronic energy + Delta-G solvation = -15537.406042 eV Core-core repulsion = 12725.272332 eV Total energy + Delta-G solvation = -2812.133710 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.080 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.25482 -40.81813 -39.13836 -35.96497 -33.74748 -31.33245 -31.13488 -29.56083 -27.12995 -24.20784 -23.36401 -22.53350 -20.28545 -19.42188 -18.12036 -17.35692 -16.99878 -16.48559 -16.43605 -16.04280 -15.91090 -15.37262 -14.52566 -14.29405 -13.82399 -13.69145 -13.51954 -13.40173 -13.20793 -12.87115 -12.58432 -12.44278 -12.09238 -11.79735 -11.52247 -11.26722 -11.11431 -9.81306 -9.47841 -9.19347 -8.78737 -6.46794 0.52020 0.87351 1.14472 1.36236 1.46044 1.52451 2.15343 2.54179 3.05181 3.40746 3.62946 4.02037 4.13242 4.24555 4.37648 4.48622 4.51174 4.53569 4.69071 4.86945 4.95073 5.05415 5.21214 5.27820 5.44154 5.54095 5.72049 5.87067 5.96384 6.01667 6.09369 6.47611 6.66963 6.80483 8.15734 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.044118 B = 0.006210 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.515438 B = 4507.449072 C = 4904.977955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.040 3.960 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.260 1.260 6 H -0.257 1.257 7 C -0.484 4.484 8 H 0.074 0.926 9 C 0.064 3.936 10 C -0.166 4.166 11 C -0.083 4.083 12 C -0.154 4.154 13 C -0.099 4.099 14 C -0.203 4.203 15 C 0.074 3.926 16 O -0.386 6.386 17 C 0.080 3.920 18 C -0.096 4.096 19 C -0.062 4.062 20 F -0.170 7.170 21 H 0.297 0.703 22 H 0.116 0.884 23 H 0.118 0.882 24 H 0.148 0.852 25 H 0.109 0.891 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.401 -6.251 -2.594 7.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.178 4.178 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.184 1.184 6 H -0.181 1.181 7 C -0.512 4.512 8 H 0.092 0.908 9 C 0.061 3.939 10 C -0.186 4.186 11 C -0.101 4.101 12 C -0.156 4.156 13 C -0.100 4.100 14 C -0.221 4.221 15 C -0.002 4.002 16 O -0.305 6.305 17 C 0.004 3.996 18 C -0.115 4.115 19 C -0.082 4.082 20 F -0.150 7.150 21 H 0.108 0.892 22 H 0.134 0.866 23 H 0.136 0.864 24 H 0.166 0.834 25 H 0.127 0.873 26 H 0.105 0.895 27 H 0.111 0.889 28 H 0.100 0.900 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.727 -6.180 -2.741 7.290 hybrid contribution 0.760 0.880 0.614 1.315 sum -1.968 -5.300 -2.127 6.040 Atomic orbital electron populations 1.69810 1.08976 1.31509 1.32715 1.26810 0.95587 1.04577 0.90834 0.85121 0.79193 0.75400 0.79676 1.18602 1.18365 1.18069 1.19746 0.98367 0.92535 1.40562 0.90753 1.18041 0.93274 0.91629 0.91003 1.20808 0.98909 0.97896 1.00975 1.20758 0.98724 0.91620 0.99038 1.17575 0.99701 0.91506 1.06789 1.21319 0.98154 0.94051 0.96450 1.24785 1.00278 0.96441 1.00605 1.22287 1.02959 0.95335 0.79581 1.89063 1.53581 1.59765 1.28119 1.22134 0.90848 0.91593 0.95062 1.20499 0.96210 0.95842 0.98916 1.17701 0.92407 0.95626 1.02498 1.91246 1.54502 1.97376 1.71833 0.89219 0.86577 0.86428 0.83435 0.87293 0.89544 0.88933 0.90028 0.86025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.06 10.97 21.84 0.24 -39.82 15 2 C 0.04 1.93 5.13 85.28 0.44 2.37 15 3 Si 0.99 36.79 29.59 68.60 2.03 38.82 15 4 H -0.26 -9.43 7.11 99.48 0.71 -8.73 15 5 H -0.26 -9.68 7.11 99.48 0.71 -8.98 15 6 H -0.26 -8.85 7.11 99.48 0.71 -8.15 15 7 C -0.48 -26.15 8.75 23.34 0.20 -25.95 15 8 H 0.07 4.01 7.74 -2.91 -0.02 3.99 15 9 C 0.06 3.44 5.57 -21.23 -0.12 3.33 15 10 C -0.17 -8.39 8.62 22.45 0.19 -8.20 15 11 C -0.08 -3.67 9.71 22.27 0.22 -3.46 15 12 C -0.15 -6.43 5.75 -19.97 -0.11 -6.55 15 13 C -0.10 -3.39 5.64 -18.41 -0.10 -3.49 15 14 C -0.20 -5.92 11.03 24.75 0.27 -5.65 15 15 C 0.07 1.78 7.64 71.39 0.55 2.32 15 16 O -0.39 -11.33 11.79 -148.98 -1.76 -13.09 15 17 C 0.08 2.37 7.62 71.39 0.54 2.92 15 18 C -0.10 -4.28 9.68 22.29 0.22 -4.06 15 19 C -0.06 -3.20 7.25 22.59 0.16 -3.04 15 20 F -0.17 -8.77 16.70 44.97 0.75 -8.02 15 21 H 0.30 13.07 8.30 -92.71 -0.77 12.30 15 22 H 0.12 5.99 6.19 -2.91 -0.02 5.97 15 23 H 0.12 4.60 8.06 -2.91 -0.02 4.58 15 24 H 0.15 4.06 8.06 -2.91 -0.02 4.04 15 25 H 0.11 2.14 8.14 -2.39 -0.02 2.12 15 26 H 0.09 1.74 8.14 -2.39 -0.02 1.72 15 27 H 0.09 2.68 8.14 -2.39 -0.02 2.66 15 28 H 0.08 2.22 8.14 -2.39 -0.02 2.20 15 29 H 0.12 4.81 8.06 -2.91 -0.02 4.79 15 Total: -1.00 -57.93 261.73 4.88 -53.04 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 1.16 Total: 18.51 kcal Atomic # 6 Polarization: -51.91 SS G_CDS: 2.46 Total: -49.45 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.24 Total: -39.82 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -1.76 Total: -13.09 kcal Atomic # 9 Polarization: -8.77 SS G_CDS: 0.75 Total: -8.02 kcal Atomic # 14 Polarization: 36.79 SS G_CDS: 2.03 Total: 38.82 kcal Total: -57.93 4.88 -53.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239480470.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.304 kcal (2) G-P(sol) polarization free energy of solvation -57.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds