Wall clock time and date at job start Thu Apr 9 2020 12:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30765 * 1 3 3 Si 1.86800 * 120.00244 * 2 1 4 4 H 1.48499 * 109.47200 * 270.00045 * 3 2 1 5 5 H 1.48501 * 109.46592 * 29.99656 * 3 2 1 6 6 H 1.48503 * 109.47223 * 149.99614 * 3 2 1 7 7 C 1.40094 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00036 * 161.98697 * 7 2 1 9 9 C 1.40764 * 119.99577 * 341.97693 * 7 2 1 10 10 C 1.40833 * 120.60968 * 335.69970 * 9 7 2 11 11 C 1.37516 * 119.82267 * 179.69903 * 10 9 7 12 12 F 1.35104 * 119.42703 * 180.26844 * 11 10 9 13 13 C 1.39080 * 121.14778 * 0.54045 * 11 10 9 14 14 C 1.37804 * 121.27635 * 359.47364 * 13 11 10 15 15 C 1.39537 * 120.06989 * 0.23346 * 14 13 11 16 16 C 1.47114 * 120.55109 * 180.02562 * 15 14 13 17 17 C 1.33536 * 125.99272 * 105.03377 * 16 15 14 18 18 C 1.51198 * 108.00739 * 179.97438 * 17 16 15 19 19 O 1.43976 * 105.81329 * 17.50557 * 18 17 16 20 20 C 1.44141 * 103.98365 * 332.07772 * 19 18 17 21 21 H 0.96999 * 120.00107 * 0.02562 * 1 2 3 22 22 H 1.07998 * 120.08417 * 359.97438 * 10 9 7 23 23 H 1.08000 * 119.35892 * 179.75686 * 13 11 10 24 24 H 1.07998 * 119.96265 * 180.26239 * 14 13 11 25 25 H 1.07995 * 125.99435 * 359.97438 * 17 16 15 26 26 H 1.09000 * 110.18269 * 136.59502 * 18 17 16 27 27 H 1.09008 * 110.17668 * 258.34234 * 18 17 16 28 28 H 1.09002 * 110.32964 * 268.93205 * 20 19 18 29 29 H 1.09001 * 110.12238 * 147.05163 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 2.4892 2.0464 -1.4001 5 1 1.4391 2.6526 0.7000 6 1 3.5393 1.4401 0.7001 7 6 2.0081 -1.2132 -0.0005 8 1 3.0484 -1.2360 -0.2898 9 6 1.3560 -2.4025 0.3761 10 6 0.2243 -2.3655 1.2135 11 6 -0.4040 -3.5368 1.5663 12 9 -1.4923 -3.4916 2.3656 13 6 0.0648 -4.7675 1.1193 14 6 1.1682 -4.8576 0.2987 15 6 1.8420 -3.7014 -0.0964 16 6 3.0208 -3.7852 -0.9726 17 6 3.0566 -3.4772 -2.2715 18 6 4.4652 -3.7110 -2.7686 19 8 5.0944 -4.5517 -1.7836 20 6 4.4057 -4.2292 -0.5592 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1518 -1.4195 1.5739 23 1 -0.4486 -5.6697 1.4173 24 1 1.5114 -5.8242 -0.0394 25 1 2.2253 -3.1232 -2.8630 26 1 4.4442 -4.2149 -3.7350 27 1 4.9971 -2.7631 -2.8508 28 1 4.9192 -3.4217 -0.0373 29 1 4.3431 -5.1104 0.0792 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239490552.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:20 Heat of formation + Delta-G solvation = -70.620554 kcal Electronic energy + Delta-G solvation = -15842.828434 eV Core-core repulsion = 13030.726218 eV Total energy + Delta-G solvation = -2812.102216 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.080 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.59227 -40.71170 -38.81813 -35.69811 -33.83017 -31.67521 -30.62107 -29.07763 -27.32540 -24.25028 -23.08134 -22.74154 -20.04764 -19.50104 -17.87878 -17.56463 -17.00371 -16.62776 -16.37095 -16.24499 -15.83800 -14.97189 -14.62126 -14.32697 -14.03468 -13.67799 -13.35904 -13.34905 -13.08673 -12.82836 -12.62812 -12.25205 -12.10885 -11.78905 -11.65721 -11.14519 -11.11106 -9.59485 -9.49155 -9.08990 -8.74719 -6.47622 0.57379 0.90977 1.22982 1.36675 1.46612 1.52814 2.13369 2.55401 3.09355 3.42022 3.76022 3.79610 4.17704 4.35479 4.48273 4.51627 4.55556 4.57264 4.73312 4.90187 4.98915 5.04290 5.20255 5.43259 5.48572 5.57925 5.74432 5.86456 5.96591 6.03431 6.18151 6.50667 6.73764 6.83261 8.14877 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.015674 B = 0.012547 C = 0.007416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.003121 B = 2231.159801 C = 3774.823494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.036 3.964 3 Si 0.981 3.019 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.255 1.255 7 C -0.456 4.456 8 H 0.088 0.912 9 C 0.123 3.877 10 C -0.240 4.240 11 C 0.102 3.898 12 F -0.169 7.169 13 C -0.288 4.288 14 C -0.043 4.043 15 C -0.191 4.191 16 C -0.082 4.082 17 C -0.204 4.204 18 C 0.077 3.923 19 O -0.383 6.383 20 C 0.080 3.920 21 H 0.294 0.706 22 H 0.111 0.889 23 H 0.123 0.877 24 H 0.130 0.870 25 H 0.135 0.865 26 H 0.110 0.890 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.707 -1.559 -2.913 6.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.182 4.182 3 Si 0.801 3.199 4 H -0.181 1.181 5 H -0.192 1.192 6 H -0.178 1.178 7 C -0.483 4.483 8 H 0.106 0.894 9 C 0.120 3.880 10 C -0.260 4.260 11 C 0.082 3.918 12 F -0.148 7.148 13 C -0.308 4.308 14 C -0.061 4.061 15 C -0.192 4.192 16 C -0.082 4.082 17 C -0.223 4.223 18 C 0.002 3.998 19 O -0.302 6.302 20 C 0.004 3.996 21 H 0.105 0.895 22 H 0.129 0.871 23 H 0.141 0.859 24 H 0.148 0.852 25 H 0.153 0.847 26 H 0.128 0.872 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.636 -1.567 -2.931 6.543 hybrid contribution -0.695 0.989 0.366 1.263 sum 4.940 -0.579 -2.565 5.597 Atomic orbital electron populations 1.69844 1.09386 1.31424 1.32325 1.26934 0.95389 1.04978 0.90900 0.85203 0.79278 0.75509 0.79938 1.18135 1.19172 1.17813 1.19717 0.98640 0.91458 1.38494 0.89404 1.18658 0.89644 0.92150 0.87526 1.21102 1.02735 0.95762 1.06436 1.17940 0.84888 0.95735 0.93188 1.91322 1.53417 1.97659 1.72384 1.20319 1.04312 0.94869 1.11313 1.20678 0.93577 0.97058 0.94761 1.19443 1.00283 0.92707 1.06782 1.21130 0.93623 0.99415 0.94039 1.24634 0.98566 1.02808 0.96244 1.22225 0.89012 0.95282 0.93314 1.89060 1.58752 1.63541 1.18874 1.22169 0.88646 1.01006 0.87757 0.89472 0.87141 0.85908 0.85169 0.84676 0.87204 0.90336 0.90917 0.88490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.13 10.97 21.85 0.24 -39.89 15 2 C 0.04 1.71 5.15 85.30 0.44 2.15 15 3 Si 0.98 35.39 29.60 68.60 2.03 37.42 15 4 H -0.26 -8.85 7.11 99.48 0.71 -8.14 15 5 H -0.27 -9.31 7.11 99.48 0.71 -8.61 15 6 H -0.25 -9.00 7.11 99.48 0.71 -8.29 15 7 C -0.46 -22.56 8.59 23.34 0.20 -22.36 15 8 H 0.09 4.16 7.37 -2.91 -0.02 4.14 15 9 C 0.12 6.31 5.74 -19.87 -0.11 6.19 15 10 C -0.24 -12.69 8.66 22.73 0.20 -12.49 15 11 C 0.10 5.02 7.25 22.30 0.16 5.18 15 12 F -0.17 -8.07 17.24 44.97 0.78 -7.30 15 13 C -0.29 -12.71 9.95 22.37 0.22 -12.49 15 14 C -0.04 -1.80 9.78 22.48 0.22 -1.58 15 15 C -0.19 -8.64 5.93 -18.48 -0.11 -8.75 15 16 C -0.08 -3.19 4.62 -18.44 -0.09 -3.28 15 17 C -0.20 -7.24 11.03 24.78 0.27 -6.97 15 18 C 0.08 2.23 7.64 71.39 0.55 2.78 15 19 O -0.38 -12.52 11.80 -148.98 -1.76 -14.27 15 20 C 0.08 2.71 7.62 71.39 0.54 3.26 15 21 H 0.29 13.20 8.29 -92.71 -0.77 12.43 15 22 H 0.11 6.14 6.18 -2.91 -0.02 6.13 15 23 H 0.12 4.75 8.06 -2.91 -0.02 4.72 15 24 H 0.13 4.63 8.06 -2.91 -0.02 4.60 15 25 H 0.14 4.86 8.06 -2.91 -0.02 4.83 15 26 H 0.11 2.58 8.14 -2.39 -0.02 2.56 15 27 H 0.08 2.08 8.14 -2.38 -0.02 2.06 15 28 H 0.07 2.40 8.14 -2.39 -0.02 2.38 15 29 H 0.10 3.02 8.14 -2.39 -0.02 3.00 15 Total: -1.00 -55.54 261.48 4.95 -50.59 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 1.16 Total: 21.81 kcal Atomic # 6 Polarization: -50.86 SS G_CDS: 2.49 Total: -48.37 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.24 Total: -39.89 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -1.76 Total: -14.27 kcal Atomic # 9 Polarization: -8.07 SS G_CDS: 0.78 Total: -7.30 kcal Atomic # 14 Polarization: 35.39 SS G_CDS: 2.03 Total: 37.42 kcal Total: -55.54 4.95 -50.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239490552.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.028 kcal (2) G-P(sol) polarization free energy of solvation -55.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds