Wall clock time and date at job start Thu Apr 9 2020 12:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30771 * 1 3 3 Si 1.86805 * 119.99919 * 2 1 4 4 H 1.48503 * 109.47011 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46883 * 300.00288 * 3 2 1 6 6 H 1.48503 * 109.47119 * 60.00044 * 3 2 1 7 7 C 1.40106 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99906 * 199.57847 * 7 2 1 9 9 C 1.40674 * 119.99846 * 19.57556 * 7 2 1 10 10 C 1.41161 * 120.63229 * 36.58813 * 9 7 2 11 11 F 1.35099 * 120.11488 * 0.02562 * 10 9 7 12 12 C 1.37622 * 119.76901 * 180.33731 * 10 9 7 13 13 C 1.38694 * 121.16595 * 359.64681 * 12 10 9 14 14 C 1.37937 * 121.35090 * 0.04546 * 13 12 10 15 15 C 1.39452 * 120.10808 * 0.02562 * 14 13 12 16 16 C 1.47161 * 120.56390 * 179.97438 * 15 14 13 17 17 C 1.33662 * 126.09094 * 104.97183 * 16 15 14 18 18 C 1.51195 * 108.04498 * 179.97438 * 17 16 15 19 19 O 1.43985 * 105.80970 * 342.50875 * 18 17 16 20 20 C 1.43988 * 104.05613 * 27.71047 * 19 18 17 21 21 H 0.97003 * 120.00439 * 359.97438 * 1 2 3 22 22 H 1.07993 * 119.41119 * 179.67194 * 12 10 9 23 23 H 1.08008 * 119.32133 * 180.02562 * 13 12 10 24 24 H 1.08002 * 119.94729 * 179.97438 * 14 13 12 25 25 H 1.08004 * 125.96643 * 359.97438 * 17 16 15 26 26 H 1.09001 * 110.18247 * 223.42945 * 18 17 16 27 27 H 1.08993 * 110.24862 * 101.63010 * 18 17 16 28 28 H 1.09000 * 110.17645 * 91.37320 * 20 19 18 29 29 H 1.09005 * 110.17999 * 213.12551 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 3.7017 1.3464 -0.0006 5 1 1.8829 2.3964 -1.2124 6 1 1.8830 2.3965 1.2125 7 6 2.0083 -1.2133 -0.0005 8 1 3.0415 -1.2405 0.3129 9 6 1.3659 -2.3962 -0.4093 10 6 0.4273 -2.3776 -1.4635 11 9 0.1371 -1.2176 -2.0922 12 6 -0.1958 -3.5441 -1.8442 13 6 0.0862 -4.7472 -1.2144 14 6 0.9997 -4.8206 -0.1835 15 6 1.6620 -3.6716 0.2475 16 6 2.6381 -3.7384 1.3468 17 6 3.9678 -3.6811 1.2237 18 6 4.5711 -3.7860 2.6061 19 8 3.5025 -3.4882 3.5241 20 6 2.3128 -3.8840 2.8162 21 1 -0.4851 0.8400 0.0004 22 1 -0.9169 -3.5223 -2.6479 23 1 -0.4200 -5.6448 -1.5376 24 1 1.2017 -5.7694 0.2913 25 1 4.5153 -3.5780 0.2985 26 1 5.3777 -3.0619 2.7204 27 1 4.9450 -4.7951 2.7789 28 1 2.0660 -4.9206 3.0458 29 1 1.4814 -3.2318 3.0838 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239495674.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:25 Heat of formation + Delta-G solvation = -47.392480 kcal Electronic energy + Delta-G solvation = -16128.926797 eV Core-core repulsion = 13317.831826 eV Total energy + Delta-G solvation = -2811.094971 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.080 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -46.99101 -39.26307 -36.95397 -33.74473 -32.37804 -29.71160 -29.14467 -27.64243 -25.29725 -22.88284 -21.28680 -20.89548 -18.51841 -17.48263 -16.30537 -15.61561 -15.35013 -14.91828 -14.48414 -14.29086 -13.90349 -13.73796 -12.89338 -12.35887 -12.12775 -12.09482 -11.68577 -11.51493 -11.37960 -11.26315 -10.95076 -10.73192 -10.58358 -10.15202 -9.81696 -9.53607 -9.17040 -8.04815 -7.41642 -7.28371 -6.91572 -4.50951 2.34989 2.65603 2.79441 3.05837 3.10985 3.11730 3.89465 4.45681 4.50319 5.06982 5.28044 5.61161 5.75768 5.76839 5.92886 5.94409 6.00178 6.10232 6.21270 6.47375 6.54948 6.82278 6.93931 7.00018 7.05171 7.36129 7.40520 7.56339 7.75341 7.77766 8.02416 8.33032 8.62388 8.76574 10.06112 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.018772 B = 0.012748 C = 0.008304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.213249 B = 2195.876764 C = 3370.956829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.078 3.922 3 Si 0.909 3.091 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.450 4.450 8 H 0.089 0.911 9 C 0.109 3.891 10 C 0.028 3.972 11 F -0.144 7.144 12 C -0.123 4.123 13 C -0.225 4.225 14 C -0.077 4.077 15 C -0.156 4.156 16 C -0.040 4.040 17 C -0.227 4.227 18 C 0.078 3.922 19 O -0.373 6.373 20 C 0.076 3.924 21 H 0.285 0.715 22 H 0.099 0.901 23 H 0.097 0.903 24 H 0.096 0.904 25 H 0.139 0.861 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.668 -3.961 1.381 5.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.477 4.477 8 H 0.107 0.893 9 C 0.106 3.894 10 C 0.007 3.993 11 F -0.123 7.123 12 C -0.143 4.143 13 C -0.244 4.244 14 C -0.096 4.096 15 C -0.158 4.158 16 C -0.040 4.040 17 C -0.245 4.245 18 C 0.002 3.998 19 O -0.292 6.292 20 C 0.000 4.000 21 H 0.096 0.904 22 H 0.117 0.883 23 H 0.115 0.885 24 H 0.114 0.886 25 H 0.156 0.844 26 H 0.100 0.900 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.453 -3.658 1.611 5.282 hybrid contribution 0.101 0.896 -0.375 0.977 sum 3.554 -2.762 1.235 4.668 Atomic orbital electron populations 1.69737 1.07906 1.30133 1.31167 1.25900 0.94666 1.01482 0.92357 0.86224 0.81101 0.80720 0.78656 1.18171 1.19502 1.19816 1.19384 0.99160 0.90852 1.38326 0.89327 1.18468 0.90181 0.91843 0.88921 1.17619 1.04235 0.80678 0.96747 1.91329 1.92519 1.47849 1.80578 1.20556 1.00241 0.92623 1.00867 1.19903 1.05552 0.96082 1.02855 1.20543 0.96334 0.95801 0.96906 1.18928 1.04272 0.93580 0.98975 1.21119 0.93589 0.95579 0.93733 1.24398 0.95418 1.06703 0.97967 1.22013 0.91117 0.99806 0.86869 1.89062 1.15953 1.85673 1.38516 1.22151 0.89038 0.99642 0.89186 0.90361 0.88289 0.88457 0.88595 0.84359 0.89994 0.92231 0.91759 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.19 11.10 55.56 0.62 -19.57 15 2 C 0.08 1.98 4.54 -17.30 -0.08 1.90 15 3 Si 0.91 19.13 29.60 -169.99 -5.03 14.10 15 4 H -0.26 -5.35 7.11 56.52 0.40 -4.95 15 5 H -0.27 -5.62 7.11 56.52 0.40 -5.22 15 6 H -0.27 -5.61 7.11 56.52 0.40 -5.20 15 7 C -0.45 -11.77 8.31 -37.96 -0.32 -12.08 15 8 H 0.09 2.27 7.26 -52.49 -0.38 1.89 15 9 C 0.11 2.85 5.56 -104.55 -0.58 2.27 15 10 C 0.03 0.72 6.68 -38.70 -0.26 0.46 15 11 F -0.14 -3.88 14.30 2.25 0.03 -3.85 15 12 C -0.12 -2.84 9.94 -39.64 -0.39 -3.24 15 13 C -0.22 -4.75 9.98 -39.52 -0.39 -5.14 15 14 C -0.08 -1.64 9.78 -39.24 -0.38 -2.03 15 15 C -0.16 -3.61 5.93 -102.50 -0.61 -4.21 15 16 C -0.04 -0.82 4.90 -102.36 -0.50 -1.32 15 17 C -0.23 -4.19 10.55 -35.67 -0.38 -4.56 15 18 C 0.08 1.27 7.64 36.25 0.28 1.54 15 19 O -0.37 -7.04 11.79 -35.23 -0.42 -7.46 15 20 C 0.08 1.43 7.61 36.25 0.28 1.70 15 21 H 0.29 6.86 8.30 -40.82 -0.34 6.52 15 22 H 0.10 2.05 8.06 -52.49 -0.42 1.63 15 23 H 0.10 1.77 8.06 -52.48 -0.42 1.35 15 24 H 0.10 1.76 8.06 -52.49 -0.42 1.34 15 25 H 0.14 2.43 8.06 -52.48 -0.42 2.01 15 26 H 0.08 1.19 8.14 -51.93 -0.42 0.77 15 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 29 H 0.09 1.83 8.14 -51.93 -0.42 1.41 15 LS Contribution 259.88 15.07 3.92 3.92 Total: -1.00 -27.90 259.88 -7.12 -35.02 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -2.90 Total: 2.57 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: -3.34 Total: -24.72 kcal Atomic # 7 Polarization: -20.19 SS G_CDS: 0.62 Total: -19.57 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.42 Total: -7.46 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.03 Total: -3.85 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -27.90 -7.12 -35.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239495674.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.375 kcal (2) G-P(sol) polarization free energy of solvation -27.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds