Wall clock time and date at job start Thu Apr 9 2020 12:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 N 1.40058 * 125.95623 * 90.02498 * 10 9 7 12 12 C 1.31778 * 108.25334 * 179.97438 * 11 10 9 13 13 C 1.47867 * 125.97180 * 180.02562 * 12 11 10 14 14 C 1.35911 * 125.92412 * 359.73875 * 13 12 11 15 15 C 1.40972 * 106.74295 * 179.85420 * 14 13 12 16 16 C 1.34705 * 107.02455 * 0.40414 * 15 14 13 17 17 O 1.34335 * 108.66583 * 359.75359 * 16 15 14 18 18 C 1.40976 * 108.05722 * 359.97438 * 12 11 10 19 19 C 1.35673 * 107.79198 * 359.76367 * 18 12 11 20 20 O 1.35758 * 126.09735 * 180.26119 * 19 18 12 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.08000 * 126.62835 * 359.96305 * 14 13 12 25 25 H 1.08002 * 126.49388 * 180.15314 * 15 14 13 26 26 H 1.07999 * 125.67116 * 179.71023 * 16 15 14 27 27 H 1.08004 * 126.10466 * 179.97438 * 18 12 11 28 28 H 0.96697 * 113.99992 * 270.14790 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 7 2.7367 -4.2431 1.1208 12 6 3.5523 -5.1958 0.7159 13 6 4.3255 -6.1059 1.5878 14 6 4.3223 -6.1020 2.9469 15 6 5.1927 -7.1320 3.3580 16 6 5.6855 -7.7012 2.2409 17 8 5.1593 -7.0787 1.1731 18 6 3.5578 -5.1964 -0.6939 19 6 2.7161 -4.2179 -1.1122 20 8 2.4391 -3.8987 -2.4022 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 3.7602 -5.4392 3.5881 25 1 5.4242 -7.4093 4.3758 26 1 6.3875 -8.5213 2.2091 27 1 4.1274 -5.8598 -1.3278 28 1 3.0302 -3.2321 -2.7782 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245917725.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:27 Heat of formation + Delta-G solvation = 49.312371 kcal Electronic energy + Delta-G solvation = -15483.929874 eV Core-core repulsion = 12696.948301 eV Total energy + Delta-G solvation = -2786.981572 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.079 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.32535 -40.53672 -36.68489 -33.90076 -32.87066 -31.96723 -29.54836 -28.52927 -26.78157 -23.58474 -21.84433 -21.66183 -20.35437 -19.64515 -17.94120 -16.94456 -16.47391 -15.92085 -15.70340 -14.78498 -14.42094 -14.18381 -13.51265 -13.33577 -12.73315 -12.58508 -12.37161 -12.22949 -11.74596 -11.36739 -11.02871 -10.89413 -10.33940 -10.10612 -9.92498 -9.77693 -9.08859 -8.72023 -8.13775 -7.66598 -6.33692 -4.42731 1.50413 2.38134 2.62987 2.73205 3.15854 3.23112 3.27566 3.45307 3.59046 4.21406 4.48719 4.96365 5.01329 5.14994 5.26245 5.44590 5.92403 5.99535 6.08930 6.14683 6.41529 6.63379 6.71678 6.92917 7.05370 7.27420 7.30736 7.61014 7.77717 8.10916 8.28573 8.62903 9.24171 10.74131 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.034296 B = 0.006034 C = 0.005544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.235938 B = 4639.007725 C = 5048.846296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.252 3.748 10 N -0.323 5.323 11 N -0.246 5.246 12 C 0.113 3.887 13 C 0.079 3.921 14 C -0.183 4.183 15 C -0.212 4.212 16 C -0.045 4.045 17 O -0.169 6.169 18 C -0.282 4.282 19 C 0.264 3.736 20 O -0.466 6.466 21 H 0.269 0.731 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.154 0.846 25 H 0.149 0.851 26 H 0.203 0.797 27 H 0.148 0.852 28 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.788 -10.551 1.075 13.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.582 4.582 8 H 0.083 0.917 9 C 0.134 3.866 10 N -0.115 5.115 11 N -0.076 5.076 12 C -0.047 4.047 13 C 0.028 3.972 14 C -0.204 4.204 15 C -0.231 4.231 16 C -0.113 4.113 17 O -0.064 6.064 18 C -0.312 4.312 19 C 0.093 3.907 20 O -0.269 6.269 21 H 0.079 0.921 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.172 0.828 25 H 0.167 0.833 26 H 0.220 0.780 27 H 0.166 0.834 28 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 7.595 -10.180 1.689 12.813 hybrid contribution 1.050 0.966 -0.622 1.557 sum 8.646 -9.213 1.067 12.679 Atomic orbital electron populations 1.69923 1.06091 1.27869 1.48609 1.24940 0.94999 0.99520 0.94218 0.86318 0.79770 0.82015 0.78375 1.20272 1.20735 1.19599 1.21267 0.93678 0.89548 1.53735 0.91734 1.19839 0.86239 0.80109 1.00367 1.50177 1.33862 1.25879 1.01583 1.77678 1.13137 1.09093 1.07733 1.18660 0.98975 0.96072 0.91000 1.18908 0.95620 0.91603 0.91103 1.21840 1.03291 1.01686 0.93601 1.21763 1.02086 0.99563 0.99703 1.24034 1.02543 1.00762 0.83993 1.84025 1.47741 1.39077 1.35539 1.20948 1.08839 1.07417 0.94030 1.18736 0.96139 0.94660 0.81210 1.84778 1.60071 1.62670 1.19403 0.92086 0.92507 0.92267 0.82837 0.83349 0.77996 0.83444 0.74518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.76 13.29 55.43 0.74 -24.03 15 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 15 3 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 15 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 7 C -0.54 -14.67 9.39 -34.44 -0.32 -14.99 15 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 15 9 C 0.25 6.43 6.14 -5.20 -0.03 6.40 15 10 N -0.32 -7.55 3.62 -62.57 -0.23 -7.78 15 11 N -0.25 -5.61 12.56 33.35 0.42 -5.19 15 12 C 0.11 2.29 7.08 -82.91 -0.59 1.70 15 13 C 0.08 1.40 7.19 -36.48 -0.26 1.13 15 14 C -0.18 -2.89 10.81 -39.38 -0.43 -3.31 15 15 C -0.21 -2.63 10.89 -39.80 -0.43 -3.06 15 16 C -0.04 -0.52 12.08 29.48 0.36 -0.16 15 17 O -0.17 -2.59 10.67 4.62 0.05 -2.54 15 18 C -0.28 -5.40 10.79 -39.46 -0.43 -5.82 15 19 C 0.26 5.44 7.98 -16.72 -0.13 5.31 15 20 O -0.47 -8.39 13.57 -18.98 -0.26 -8.65 15 21 H 0.27 7.06 8.31 -40.82 -0.34 6.73 15 22 H 0.06 1.53 8.14 -51.93 -0.42 1.11 15 23 H 0.06 1.54 8.13 -51.93 -0.42 1.12 15 24 H 0.15 2.39 8.06 -52.49 -0.42 1.97 15 25 H 0.15 1.39 8.06 -52.49 -0.42 0.97 15 26 H 0.20 1.38 8.06 -52.49 -0.42 0.96 15 27 H 0.15 2.42 8.06 -52.48 -0.42 2.00 15 28 H 0.40 5.38 9.06 45.56 0.41 5.79 15 LS Contribution 266.07 15.07 4.01 4.01 Total: -1.00 -30.78 266.07 -4.32 -35.10 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -1.67 Total: 4.56 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -2.36 Total: -11.10 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.93 Total: -36.99 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -0.21 Total: -11.19 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.78 -4.32 -35.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245917725.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.413 kcal (2) G-P(sol) polarization free energy of solvation -30.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds