Wall clock time and date at job start Thu Apr 9 2020 12:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99779 * 2 1 4 4 H 1.48498 * 109.46586 * 239.99736 * 3 2 1 5 5 H 1.48500 * 109.46909 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47075 * 119.99616 * 3 2 1 7 7 C 1.37871 * 119.99799 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99740 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00584 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47344 * 179.97438 * 9 7 2 11 11 N 1.40060 * 125.97433 * 89.97999 * 10 9 7 12 12 C 1.31568 * 108.28710 * 179.97438 * 11 10 9 13 13 C 1.48492 * 125.93917 * 180.02562 * 12 11 10 14 14 C 1.46683 * 127.10652 * 5.03701 * 13 12 11 15 15 C 1.34395 * 106.02866 * 179.97438 * 14 13 12 16 16 O 1.34151 * 108.97817 * 0.02562 * 15 14 13 17 17 C 1.34123 * 110.73193 * 359.97438 * 16 15 14 18 18 C 1.40761 * 108.11816 * 0.26102 * 12 11 10 19 19 C 1.35746 * 107.79914 * 359.56937 * 18 12 11 20 20 O 1.35762 * 126.12459 * 180.12479 * 19 18 12 21 21 H 0.97000 * 120.00091 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46914 * 60.00363 * 9 7 2 23 23 H 1.09001 * 109.47440 * 300.00301 * 9 7 2 24 24 H 1.08000 * 126.98762 * 359.97438 * 14 13 12 25 25 H 1.08003 * 125.50523 * 180.02562 * 15 14 13 26 26 H 1.07997 * 125.76551 * 180.26840 * 17 16 15 27 27 H 1.08002 * 126.09817 * 179.73592 * 18 12 11 28 28 H 0.96703 * 113.99158 * 270.35369 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 7 2.7381 -4.2377 1.1340 12 6 3.5521 -5.1909 0.7343 13 6 4.3288 -6.0999 1.6149 14 6 4.2648 -6.1827 3.0780 15 6 5.1379 -7.1404 3.4340 16 8 5.7161 -7.6360 2.3296 17 6 5.2445 -7.0260 1.2322 18 6 3.5630 -5.1955 -0.6733 19 6 2.7207 -4.2194 -1.0980 20 8 2.4496 -3.9024 -2.3899 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6240 -2.5568 0.8902 24 1 3.6425 -5.5938 3.7356 25 1 5.3412 -7.4593 4.4457 26 1 5.5400 -7.2388 0.2155 27 1 4.1369 -5.8593 -1.3030 28 1 3.0430 -3.2370 -2.7644 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245938454.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:29 Heat of formation + Delta-G solvation = 45.748071 kcal Electronic energy + Delta-G solvation = -15436.126495 eV Core-core repulsion = 12648.990363 eV Total energy + Delta-G solvation = -2787.136132 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.16566 -40.44457 -36.63396 -34.00674 -32.87366 -31.21302 -29.49488 -28.56155 -26.85639 -23.59316 -21.94052 -21.44996 -20.17908 -19.35771 -17.93933 -16.91018 -16.39353 -15.80913 -15.63729 -14.80877 -14.59239 -14.13851 -13.51691 -13.34325 -12.76420 -12.60106 -12.28383 -12.14882 -11.67166 -11.31887 -10.98888 -10.84067 -10.35047 -10.20903 -9.78625 -9.54952 -8.78702 -8.69078 -8.08024 -7.70854 -6.30792 -4.39725 1.75131 2.30736 2.55498 3.14490 3.18837 3.23623 3.26141 3.35915 3.78243 4.23345 4.51263 4.84925 5.01059 5.05786 5.35615 5.60331 5.71887 6.04386 6.11055 6.22477 6.47478 6.60128 6.84884 6.98546 7.16300 7.30932 7.36760 7.64043 7.82139 8.18736 8.44241 8.66607 9.26913 10.76978 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.033541 B = 0.005974 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.609387 B = 4685.881674 C = 5099.875126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.909 3.091 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.253 3.747 10 N -0.330 5.330 11 N -0.262 5.262 12 C 0.116 3.884 13 C -0.095 4.095 14 C -0.189 4.189 15 C -0.048 4.048 16 O -0.185 6.185 17 C -0.019 4.019 18 C -0.295 4.295 19 C 0.263 3.737 20 O -0.468 6.468 21 H 0.270 0.730 22 H 0.057 0.943 23 H 0.055 0.945 24 H 0.154 0.846 25 H 0.202 0.798 26 H 0.207 0.793 27 H 0.143 0.857 28 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.909 -10.747 0.985 13.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.135 3.865 10 N -0.121 5.121 11 N -0.091 5.091 12 C -0.045 4.045 13 C -0.098 4.098 14 C -0.209 4.209 15 C -0.114 4.114 16 O -0.081 6.081 17 C -0.089 4.089 18 C -0.325 4.325 19 C 0.091 3.909 20 O -0.272 6.272 21 H 0.079 0.921 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.171 0.829 25 H 0.219 0.781 26 H 0.223 0.777 27 H 0.161 0.839 28 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 7.844 -10.509 1.925 13.254 hybrid contribution 0.789 1.260 -0.844 1.710 sum 8.633 -9.249 1.080 12.698 Atomic orbital electron populations 1.69915 1.06081 1.27907 1.48696 1.24939 0.94994 0.99486 0.94282 0.86381 0.79412 0.81742 0.78940 1.19967 1.20858 1.19882 1.21235 0.93597 0.89660 1.53613 0.91885 1.19758 0.86323 0.80284 1.00109 1.50115 1.33978 1.26133 1.01856 1.77613 1.13867 1.09949 1.07647 1.19344 0.98237 0.95826 0.91128 1.19209 0.99807 0.98662 0.92101 1.22922 1.02565 1.01269 0.94131 1.23822 0.98306 0.98855 0.90441 1.83859 1.55870 1.54048 1.14332 1.23911 0.98334 0.96123 0.90553 1.20815 1.09626 1.08031 0.94070 1.18777 0.96228 0.94820 0.81086 1.84771 1.60163 1.62735 1.19487 0.92079 0.92541 0.92734 0.82866 0.78118 0.77654 0.83943 0.74697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.12 13.29 55.43 0.74 -24.38 15 2 C 0.07 1.82 5.46 -17.82 -0.10 1.73 15 3 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 15 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 7 C -0.54 -14.89 9.39 -34.44 -0.32 -15.21 15 8 H 0.06 1.75 7.81 -52.48 -0.41 1.34 15 9 C 0.25 6.60 6.14 -5.20 -0.03 6.57 15 10 N -0.33 -7.85 3.62 -62.56 -0.23 -8.08 15 11 N -0.26 -6.09 12.60 33.42 0.42 -5.67 15 12 C 0.12 2.30 7.15 -82.80 -0.59 1.71 15 13 C -0.09 -1.56 6.33 -103.15 -0.65 -2.21 15 14 C -0.19 -2.79 11.15 -37.53 -0.42 -3.21 15 15 C -0.05 -0.56 12.05 29.38 0.35 -0.21 15 16 O -0.18 -2.33 10.55 6.60 0.07 -2.26 15 17 C -0.02 -0.25 11.87 29.84 0.35 0.10 15 18 C -0.29 -5.44 10.60 -39.52 -0.42 -5.86 15 19 C 0.26 5.45 7.98 -16.71 -0.13 5.32 15 20 O -0.47 -8.54 13.58 -18.99 -0.26 -8.80 15 21 H 0.27 7.17 8.31 -40.82 -0.34 6.83 15 22 H 0.06 1.51 8.14 -51.93 -0.42 1.08 15 23 H 0.05 1.51 8.14 -51.93 -0.42 1.09 15 24 H 0.15 2.23 8.06 -52.49 -0.42 1.81 15 25 H 0.20 1.47 8.06 -52.48 -0.42 1.05 15 26 H 0.21 1.96 8.06 -52.49 -0.42 1.53 15 27 H 0.14 2.09 8.06 -52.49 -0.42 1.67 15 28 H 0.40 5.47 9.06 45.56 0.41 5.89 15 LS Contribution 266.30 15.07 4.01 4.01 Total: -1.00 -32.04 266.30 -3.89 -35.93 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -1.67 Total: 4.66 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -1.96 Total: -11.28 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.93 Total: -38.13 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -0.19 Total: -11.05 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.04 -3.89 -35.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245938454.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.683 kcal (2) G-P(sol) polarization free energy of solvation -32.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds