Wall clock time and date at job start Thu Apr 9 2020 12:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47120 * 2 1 4 4 C 1.46493 * 120.00414 * 269.99671 * 3 2 1 5 5 C 1.52998 * 109.47426 * 270.00377 * 4 3 2 6 6 C 1.39681 * 119.99721 * 89.99641 * 3 2 1 7 7 C 1.38913 * 120.07057 * 179.97438 * 6 3 2 8 8 C 1.38106 * 119.92415 * 180.02562 * 7 6 3 9 9 C 1.38285 * 120.07208 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.92419 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47064 * 89.99659 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.38286 * 120.15383 * 0.26802 * 9 8 7 20 20 C 1.38108 * 120.06868 * 359.45265 * 19 9 8 21 21 H 1.09004 * 109.47427 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47565 * 299.99785 * 1 2 3 23 23 H 1.09003 * 109.47054 * 60.00274 * 1 2 3 24 24 H 1.08996 * 109.47165 * 239.99854 * 2 1 3 25 25 H 1.09003 * 109.47054 * 119.99726 * 2 1 3 26 26 H 1.09010 * 109.46805 * 29.99688 * 4 3 2 27 27 H 1.08996 * 109.47705 * 149.99880 * 4 3 2 28 28 H 1.09003 * 109.47327 * 59.99418 * 5 4 3 29 29 H 1.08998 * 109.47365 * 179.97438 * 5 4 3 30 30 H 1.09000 * 109.46788 * 299.99929 * 5 4 3 31 31 H 1.08000 * 120.03949 * 0.04645 * 7 6 3 32 32 H 1.07999 * 119.96140 * 179.97438 * 8 7 6 33 33 H 1.09002 * 109.47152 * 329.99751 * 10 9 8 34 34 H 1.09001 * 109.46980 * 209.99852 * 10 9 8 35 35 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 36 36 H 1.07999 * 119.96544 * 179.70952 * 19 9 8 37 37 H 1.08005 * 120.03586 * 180.27157 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 3.7075 1.8314 -1.7103 6 6 2.2510 2.0396 1.2097 7 6 2.7145 3.3492 1.2115 8 6 2.9441 3.9971 2.4093 9 6 2.7135 3.3435 3.6060 10 6 2.9657 4.0536 4.9111 11 6 1.7104 4.7644 5.3470 12 1 0.8190 4.7074 4.7399 13 6 1.6996 5.4868 6.5214 14 7 2.7849 5.5558 7.2609 15 14 0.1434 6.3673 7.0619 16 1 -0.9492 5.3773 7.2397 17 1 0.3919 7.0670 8.3480 18 1 -0.2495 7.3580 6.0278 19 6 2.2579 2.0379 3.6078 20 6 2.0208 1.3861 2.4136 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.5817 1.6877 -2.0284 27 1 2.0956 3.1410 -1.1384 28 1 3.8745 0.7622 -1.8406 29 1 3.8891 2.3449 -2.6544 30 1 4.3883 2.2155 -0.9506 31 1 2.8949 3.8601 0.2772 32 1 3.3049 5.0150 2.4114 33 1 3.7679 4.7799 4.7805 34 1 3.2539 3.3266 5.6704 35 1 2.7774 6.0643 8.0869 36 1 2.0833 1.5288 4.5442 37 1 1.6607 0.3678 2.4157 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250057568.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:32 Heat of formation + Delta-G solvation = 15.750397 kcal Electronic energy + Delta-G solvation = -15985.922206 eV Core-core repulsion = 13534.577377 eV Total energy + Delta-G solvation = -2451.344829 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.22617 -36.61925 -33.13647 -32.41333 -31.06986 -29.91451 -28.66356 -26.10865 -23.89118 -23.28147 -21.39938 -21.34843 -19.36327 -17.11227 -16.19186 -15.85054 -14.74565 -14.40988 -14.37792 -13.75558 -13.74052 -13.39755 -12.97971 -12.57331 -12.43173 -12.34368 -12.03181 -11.76894 -11.73740 -11.18895 -11.13832 -11.01337 -10.92473 -10.56191 -10.49763 -9.95859 -9.63705 -9.35994 -8.83974 -8.34046 -8.16976 -6.63497 -5.94001 -3.98706 2.18545 2.42241 3.36688 3.36902 3.40362 3.44052 4.47114 4.71920 4.88695 4.97465 5.14299 5.32126 5.38353 5.39024 5.41318 5.57135 5.59276 5.62554 5.77822 5.80398 5.91967 6.10654 6.12988 6.16918 6.30693 6.39220 6.52288 6.76706 6.88135 7.36151 7.36443 7.53863 7.68243 7.69150 8.01080 8.03068 8.07513 8.45055 9.06954 9.64516 11.14062 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.036845 B = 0.005349 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.756778 B = 5233.511848 C = 5473.392443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.125 3.875 3 N -0.637 5.637 4 C 0.124 3.876 5 C -0.172 4.172 6 C 0.184 3.816 7 C -0.195 4.195 8 C -0.081 4.081 9 C -0.085 4.085 10 C 0.053 3.947 11 C -0.508 4.508 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.897 5.897 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.081 4.081 20 C -0.195 4.195 21 H 0.058 0.942 22 H 0.061 0.939 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.261 0.739 36 H 0.115 0.885 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.069 -9.451 -16.052 18.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.001 3.999 3 N -0.351 5.351 4 C 0.000 4.000 5 C -0.230 4.230 6 C 0.086 3.914 7 C -0.217 4.217 8 C -0.100 4.100 9 C -0.086 4.086 10 C 0.017 3.983 11 C -0.547 4.547 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.536 5.536 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.100 4.100 20 C -0.217 4.217 21 H 0.077 0.923 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.128 0.872 32 H 0.133 0.867 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.133 0.867 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.026 -9.449 -16.024 18.631 hybrid contribution -0.907 0.524 0.333 1.099 sum -1.933 -8.926 -15.690 18.155 Atomic orbital electron populations 1.22244 0.96991 1.01380 1.02507 1.21224 0.93581 0.83195 1.01895 1.46372 1.73266 1.12759 1.02684 1.21227 0.95580 0.97813 0.85337 1.22239 0.98072 1.01623 1.01102 1.17614 0.96808 0.91784 0.85176 1.20566 1.09071 0.94016 0.98028 1.20839 0.98678 0.99025 0.91440 1.20452 0.97544 0.93664 0.96954 1.18238 0.97123 0.94811 0.88161 1.21103 0.97153 1.30336 1.06068 0.92646 1.25012 0.96208 0.96619 0.96564 1.69952 1.27529 1.41817 1.14299 0.86637 0.83613 0.79863 0.77785 1.20244 1.21301 1.20252 1.20842 0.97789 0.94762 0.96602 1.20563 1.09757 0.99964 0.91393 0.92337 0.92030 0.92931 0.91766 0.90925 0.91755 0.90896 0.92943 0.92334 0.92104 0.87208 0.86700 0.95735 0.95738 0.92928 0.86702 0.87209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 10.24 37.16 0.38 -1.41 16 2 C 0.12 1.37 5.88 -4.04 -0.02 1.35 16 3 N -0.64 -8.47 2.61 -171.76 -0.45 -8.92 16 4 C 0.12 1.36 5.88 -4.05 -0.02 1.34 16 5 C -0.17 -1.71 10.24 37.16 0.38 -1.33 16 6 C 0.18 3.08 6.55 -83.79 -0.55 2.53 16 7 C -0.19 -3.43 9.21 -39.38 -0.36 -3.79 16 8 C -0.08 -1.66 9.69 -39.61 -0.38 -2.04 16 9 C -0.08 -1.92 5.07 -104.59 -0.53 -2.45 16 10 C 0.05 1.43 5.10 -29.03 -0.15 1.28 16 11 C -0.51 -14.65 9.09 -34.44 -0.31 -14.96 16 12 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 15 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C -0.08 -1.66 9.69 -39.61 -0.38 -2.04 16 20 C -0.19 -3.43 9.21 -39.38 -0.36 -3.79 16 21 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.59 8.07 -51.93 -0.42 0.17 16 25 H 0.07 0.82 6.20 -51.93 -0.32 0.50 16 26 H 0.06 0.60 8.07 -51.92 -0.42 0.18 16 27 H 0.07 0.84 6.20 -51.93 -0.32 0.51 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.11 1.68 6.14 -52.49 -0.32 1.35 16 32 H 0.11 2.29 8.06 -52.49 -0.42 1.86 16 33 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 34 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.11 2.28 8.06 -52.49 -0.42 1.86 16 37 H 0.11 1.68 6.14 -52.48 -0.32 1.35 16 LS Contribution 306.06 15.07 4.61 4.61 Total: -1.00 -30.64 306.06 -8.43 -39.07 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -5.89 Total: -1.64 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: -2.42 Total: -23.78 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.29 Total: -35.23 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.64 -8.43 -39.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057568.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.821 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds