Wall clock time and date at job start Thu Apr 9 2020 12:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47120 * 2 1 4 4 C 1.46493 * 120.00414 * 269.99671 * 3 2 1 5 5 C 1.52998 * 109.47426 * 270.00377 * 4 3 2 6 6 C 1.39681 * 119.99721 * 89.99641 * 3 2 1 7 7 C 1.38913 * 120.07057 * 179.97438 * 6 3 2 8 8 C 1.38106 * 119.92415 * 180.02562 * 7 6 3 9 9 C 1.38285 * 120.07208 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.92419 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47064 * 89.99659 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.38286 * 120.15383 * 0.26802 * 9 8 7 20 20 C 1.38108 * 120.06868 * 359.45265 * 19 9 8 21 21 H 1.09004 * 109.47427 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47565 * 299.99785 * 1 2 3 23 23 H 1.09003 * 109.47054 * 60.00274 * 1 2 3 24 24 H 1.08996 * 109.47165 * 239.99854 * 2 1 3 25 25 H 1.09003 * 109.47054 * 119.99726 * 2 1 3 26 26 H 1.09010 * 109.46805 * 29.99688 * 4 3 2 27 27 H 1.08996 * 109.47705 * 149.99880 * 4 3 2 28 28 H 1.09003 * 109.47327 * 59.99418 * 5 4 3 29 29 H 1.08998 * 109.47365 * 179.97438 * 5 4 3 30 30 H 1.09000 * 109.46788 * 299.99929 * 5 4 3 31 31 H 1.08000 * 120.03949 * 0.04645 * 7 6 3 32 32 H 1.07999 * 119.96140 * 179.97438 * 8 7 6 33 33 H 1.09002 * 109.47152 * 329.99751 * 10 9 8 34 34 H 1.09001 * 109.46980 * 209.99852 * 10 9 8 35 35 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 36 36 H 1.07999 * 119.96544 * 179.70952 * 19 9 8 37 37 H 1.08005 * 120.03586 * 180.27157 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 3.7075 1.8314 -1.7103 6 6 2.2510 2.0396 1.2097 7 6 2.7145 3.3492 1.2115 8 6 2.9441 3.9971 2.4093 9 6 2.7135 3.3435 3.6060 10 6 2.9657 4.0536 4.9111 11 6 1.7104 4.7644 5.3470 12 1 0.8190 4.7074 4.7399 13 6 1.6996 5.4868 6.5214 14 7 2.7849 5.5558 7.2609 15 14 0.1434 6.3673 7.0619 16 1 -0.9492 5.3773 7.2397 17 1 0.3919 7.0670 8.3480 18 1 -0.2495 7.3580 6.0278 19 6 2.2579 2.0379 3.6078 20 6 2.0208 1.3861 2.4136 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.5817 1.6877 -2.0284 27 1 2.0956 3.1410 -1.1384 28 1 3.8745 0.7622 -1.8406 29 1 3.8891 2.3449 -2.6544 30 1 4.3883 2.2155 -0.9506 31 1 2.8949 3.8601 0.2772 32 1 3.3049 5.0150 2.4114 33 1 3.7679 4.7799 4.7805 34 1 3.2539 3.3266 5.6704 35 1 2.7774 6.0643 8.0869 36 1 2.0833 1.5288 4.5442 37 1 1.6607 0.3678 2.4157 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057568.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:32 Heat of formation + Delta-G solvation = -0.080309 kcal Electronic energy + Delta-G solvation = -15986.608677 eV Core-core repulsion = 13534.577377 eV Total energy + Delta-G solvation = -2452.031300 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.56882 -37.91430 -35.19554 -33.33105 -32.72138 -31.32609 -30.06292 -27.75584 -25.06860 -24.86846 -22.75402 -22.74789 -20.72511 -18.50671 -18.23053 -16.92860 -16.65472 -15.84860 -15.53989 -15.16861 -14.84137 -14.62679 -14.39321 -14.09897 -13.87059 -13.53079 -13.22032 -13.18762 -12.96621 -12.77122 -12.66016 -12.43638 -12.37731 -11.99299 -11.79216 -11.58996 -11.36859 -11.33095 -10.57635 -10.35214 -9.67580 -8.26428 -7.86197 -6.30111 0.67707 0.89271 1.39453 1.42680 1.51029 2.32056 2.41693 3.12831 3.15864 4.00127 4.02172 4.23584 4.29808 4.33031 4.48553 4.56625 4.59449 4.65362 4.65617 4.77423 4.85991 4.94289 5.03255 5.05530 5.13187 5.21282 5.35169 5.38395 5.39340 5.45204 5.56421 5.70868 5.81820 6.07134 6.23723 6.26448 6.57578 6.74563 6.82895 7.38147 8.92201 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.036845 B = 0.005349 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.756778 B = 5233.511848 C = 5473.392443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.117 3.883 3 N -0.633 5.633 4 C 0.116 3.884 5 C -0.166 4.166 6 C 0.199 3.801 7 C -0.194 4.194 8 C -0.090 4.090 9 C -0.124 4.124 10 C 0.064 3.936 11 C -0.527 4.527 12 H 0.051 0.949 13 C 0.003 3.997 14 N -0.932 5.932 15 Si 0.965 3.035 16 H -0.268 1.268 17 H -0.279 1.279 18 H -0.268 1.268 19 C -0.090 4.090 20 C -0.194 4.194 21 H 0.079 0.921 22 H 0.036 0.964 23 H 0.057 0.943 24 H 0.092 0.908 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.039 0.961 31 H 0.136 0.864 32 H 0.109 0.891 33 H -0.003 1.003 34 H -0.003 1.003 35 H 0.265 0.735 36 H 0.109 0.891 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.559 -10.507 -18.627 21.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.005 4.005 3 N -0.345 5.345 4 C -0.006 4.006 5 C -0.224 4.224 6 C 0.098 3.902 7 C -0.216 4.216 8 C -0.109 4.109 9 C -0.126 4.126 10 C 0.027 3.973 11 C -0.565 4.565 12 H 0.070 0.930 13 C -0.195 4.195 14 N -0.573 5.573 15 Si 0.789 3.211 16 H -0.193 1.193 17 H -0.204 1.204 18 H -0.193 1.193 19 C -0.109 4.109 20 C -0.216 4.216 21 H 0.098 0.902 22 H 0.056 0.944 23 H 0.076 0.924 24 H 0.110 0.890 25 H 0.088 0.912 26 H 0.109 0.891 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.058 0.942 31 H 0.154 0.846 32 H 0.127 0.873 33 H 0.015 0.985 34 H 0.015 0.985 35 H 0.074 0.926 36 H 0.127 0.873 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.520 -10.533 -18.647 21.564 hybrid contribution -0.420 0.746 0.976 1.298 sum -2.940 -9.787 -17.671 20.414 Atomic orbital electron populations 1.22186 0.96326 1.02527 1.01523 1.21473 0.94034 0.81831 1.03188 1.46688 1.71980 1.13653 1.02187 1.21475 0.96899 0.97577 0.84667 1.22174 0.96655 1.02195 1.01395 1.17734 0.94554 0.91433 0.86483 1.20730 1.08520 0.94535 0.97795 1.20833 0.99142 0.99014 0.91898 1.20134 1.01729 0.95013 0.95715 1.17970 0.95635 0.93667 0.89997 1.21420 0.97716 1.30907 1.06497 0.93029 1.25947 0.99792 0.97287 0.96468 1.70084 1.29814 1.42592 1.14766 0.85506 0.79236 0.78727 0.77615 1.19302 1.20409 1.19314 1.20835 0.98180 0.94091 0.97787 1.20728 1.09254 1.00979 0.90614 0.90218 0.94433 0.92427 0.88980 0.91178 0.89133 0.91360 0.92329 0.90279 0.94193 0.84618 0.87298 0.98478 0.98475 0.92634 0.87292 0.84613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 10.24 71.98 0.74 -2.15 16 2 C 0.12 2.12 5.88 86.38 0.51 2.63 16 3 N -0.63 -14.76 2.61 -697.32 -1.82 -16.58 16 4 C 0.12 2.11 5.88 86.38 0.51 2.62 16 5 C -0.17 -2.73 10.24 71.98 0.74 -1.99 16 6 C 0.20 6.29 6.55 38.21 0.25 6.54 16 7 C -0.19 -6.63 9.21 22.40 0.21 -6.42 16 8 C -0.09 -3.78 9.69 22.25 0.22 -3.57 16 9 C -0.12 -5.89 5.07 -19.84 -0.10 -5.99 16 10 C 0.06 3.66 5.10 29.10 0.15 3.81 16 11 C -0.53 -31.62 9.09 25.60 0.23 -31.39 16 12 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 13 C 0.00 0.16 5.46 84.66 0.46 0.62 16 14 N -0.93 -58.09 13.29 21.45 0.28 -57.80 16 15 Si 0.97 45.69 29.54 68.60 2.03 47.71 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 C -0.09 -3.79 9.69 22.25 0.22 -3.57 16 20 C -0.19 -6.62 9.21 22.40 0.21 -6.42 16 21 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 22 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.09 1.23 8.07 -2.39 -0.02 1.21 16 25 H 0.07 1.33 6.20 -2.39 -0.01 1.32 16 26 H 0.09 1.24 8.07 -2.38 -0.02 1.22 16 27 H 0.07 1.33 6.20 -2.39 -0.01 1.31 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 30 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.14 3.87 6.14 -2.91 -0.02 3.85 16 32 H 0.11 4.55 8.06 -2.91 -0.02 4.52 16 33 H 0.00 -0.19 8.08 -2.39 -0.02 -0.21 16 34 H 0.00 -0.19 8.08 -2.39 -0.02 -0.21 16 35 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 36 H 0.11 4.55 8.06 -2.91 -0.02 4.52 16 37 H 0.14 3.87 6.14 -2.91 -0.02 3.85 16 Total: -1.00 -68.35 306.06 5.84 -62.51 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 1.02 Total: 9.43 kcal Atomic # 6 Polarization: -49.59 SS G_CDS: 4.33 Total: -45.27 kcal Atomic # 7 Polarization: -72.85 SS G_CDS: -1.53 Total: -74.38 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -68.35 5.84 -62.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057568.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.427 kcal (2) G-P(sol) polarization free energy of solvation -68.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds