Wall clock time and date at job start Thu Apr 9 2020 12:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46853 * 2 1 4 4 C 1.50703 * 109.46876 * 119.99033 * 2 1 3 5 5 C 1.38121 * 120.04351 * 304.93515 * 4 2 1 6 6 C 1.38256 * 120.07756 * 179.97438 * 5 4 2 7 7 C 1.50702 * 119.92465 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.47022 * 90.00785 * 7 6 5 9 9 C 1.50693 * 109.47022 * 180.02562 * 8 7 6 10 10 H 1.07994 * 120.00412 * 359.97438 * 9 8 7 11 11 C 1.37883 * 119.99650 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00046 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99901 * 179.97438 * 11 9 8 14 14 H 1.48509 * 109.46976 * 59.99643 * 13 11 9 15 15 H 1.48499 * 109.47303 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47340 * 299.99962 * 13 11 9 17 17 C 1.38308 * 120.14892 * 359.72619 * 6 5 4 18 18 C 1.38080 * 120.07254 * 0.55190 * 17 6 5 19 19 C 1.38888 * 120.03381 * 124.90475 * 4 2 1 20 20 N 1.39676 * 120.07622 * 0.05326 * 19 4 2 21 21 H 1.09003 * 109.47703 * 300.00870 * 1 2 3 22 22 H 1.09011 * 109.46934 * 60.00350 * 1 2 3 23 23 H 1.08995 * 109.47152 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47455 * 239.99473 * 2 1 3 25 25 H 1.09005 * 109.47129 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.47003 * 299.99391 * 3 2 1 27 27 H 1.08996 * 109.47520 * 59.99513 * 3 2 1 28 28 H 1.08003 * 119.96057 * 359.95011 * 5 4 2 29 29 H 1.09006 * 109.47369 * 210.00167 * 7 6 5 30 30 H 1.08992 * 109.47366 * 330.00472 * 7 6 5 31 31 H 1.09006 * 109.46544 * 299.99887 * 8 7 6 32 32 H 1.09000 * 109.47041 * 59.99677 * 8 7 6 33 33 H 0.97007 * 119.99953 * 179.97438 * 12 11 9 34 34 H 1.08000 * 119.96366 * 180.27437 * 17 6 5 35 35 H 1.08004 * 120.03320 * 179.72332 * 18 17 6 36 36 H 0.97000 * 120.00598 * 173.54864 * 20 19 4 37 37 H 0.97006 * 120.00087 * 353.54855 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7102 1.2306 5 6 1.6172 -0.3012 2.4829 6 6 2.0771 -0.9526 3.6123 7 6 1.6225 -0.5031 4.9770 8 6 0.3530 -1.2628 5.3675 9 6 -0.1020 -0.8129 6.7318 10 1 0.4584 -0.0607 7.2671 11 6 -1.2338 -1.3616 7.2967 12 7 -1.9164 -2.2772 6.6446 13 14 -1.7974 -0.8044 8.9883 14 1 -2.0808 0.6531 8.9604 15 1 -3.0303 -1.5407 9.3667 16 1 -0.7297 -1.0822 9.9822 17 6 2.9496 -2.0191 3.4923 18 6 3.3730 -2.4295 2.2437 19 6 2.9126 -1.7773 1.1068 20 7 3.3348 -2.1932 -0.1580 21 1 -0.3634 0.5140 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 3.1300 1.4426 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6765 1.9564 0.8899 28 1 0.9329 0.5287 2.5799 29 1 2.4065 -0.7066 5.7065 30 1 1.4140 0.5665 4.9565 31 1 -0.4310 -1.0593 4.6380 32 1 0.5615 -2.3325 5.3880 33 1 -2.7125 -2.6634 7.0422 34 1 3.3035 -2.5286 4.3763 35 1 4.0578 -3.2596 2.1510 36 1 4.0197 -2.8751 -0.2408 37 1 2.9431 -1.8002 -0.9537 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250059588.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:35 Heat of formation + Delta-G solvation = -25.473112 kcal Electronic energy + Delta-G solvation = -15978.431266 eV Core-core repulsion = 13525.298852 eV Total energy + Delta-G solvation = -2453.132414 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.75467 -37.00459 -35.78414 -35.02567 -32.79038 -30.65236 -29.21205 -27.95425 -26.36647 -24.51904 -23.36181 -21.82755 -20.34151 -18.52187 -18.10744 -17.76952 -16.51641 -15.87169 -15.47489 -15.17824 -14.75261 -14.64167 -14.46292 -14.26284 -14.05871 -13.58356 -13.32206 -12.97630 -12.85697 -12.77943 -12.66241 -12.29431 -12.00666 -11.86594 -11.74568 -11.49903 -11.34425 -11.14176 -10.87277 -10.53911 -9.54409 -8.23363 -8.10145 -6.30241 0.60875 0.80499 1.40175 1.44049 1.51965 2.42233 3.02238 3.10546 3.14287 3.83700 3.92544 4.18892 4.32593 4.36455 4.45220 4.54830 4.66300 4.76861 4.82861 4.92749 4.98405 5.01662 5.06584 5.13419 5.26463 5.32480 5.35676 5.41733 5.50875 5.53365 5.67056 5.75288 5.87119 6.07576 6.11466 6.26438 6.71231 6.86924 7.11137 7.38917 8.93663 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.032592 B = 0.005467 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.905057 B = 5120.279332 C = 5492.319493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.040 4.040 3 C -0.139 4.139 4 C -0.158 4.158 5 C -0.079 4.079 6 C -0.143 4.143 7 C -0.057 4.057 8 C 0.039 3.961 9 C -0.545 4.545 10 H 0.061 0.939 11 C -0.001 4.001 12 N -0.935 5.935 13 Si 0.967 3.033 14 H -0.266 1.266 15 H -0.282 1.282 16 H -0.266 1.266 17 C -0.091 4.091 18 C -0.198 4.198 19 C 0.203 3.797 20 N -0.868 5.868 21 H 0.042 0.958 22 H 0.076 0.924 23 H 0.044 0.956 24 H 0.088 0.912 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.045 0.955 28 H 0.111 0.889 29 H 0.056 0.944 30 H 0.054 0.946 31 H -0.014 1.014 32 H -0.014 1.014 33 H 0.263 0.737 34 H 0.117 0.883 35 H 0.138 0.862 36 H 0.405 0.595 37 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.112 3.188 -15.704 18.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.059 4.059 3 C -0.196 4.196 4 C -0.162 4.162 5 C -0.098 4.098 6 C -0.144 4.144 7 C -0.094 4.094 8 C 0.002 3.998 9 C -0.583 4.583 10 H 0.080 0.920 11 C -0.199 4.199 12 N -0.575 5.575 13 Si 0.791 3.209 14 H -0.191 1.191 15 H -0.208 1.208 16 H -0.190 1.190 17 C -0.110 4.110 18 C -0.220 4.220 19 C 0.099 3.901 20 N -0.412 5.412 21 H 0.062 0.938 22 H 0.095 0.905 23 H 0.063 0.937 24 H 0.106 0.894 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.064 0.936 28 H 0.129 0.871 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.004 0.996 32 H 0.005 0.995 33 H 0.072 0.928 34 H 0.135 0.865 35 H 0.156 0.844 36 H 0.235 0.765 37 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 9.957 3.094 -15.676 18.826 hybrid contribution -0.559 -0.207 0.885 1.067 sum 9.398 2.887 -14.790 17.760 Atomic orbital electron populations 1.21882 0.94856 1.01434 1.02099 1.19913 0.95454 0.96166 0.94362 1.21821 1.00938 0.94727 1.02141 1.19503 1.02713 0.98826 0.95186 1.20674 0.98253 0.99250 0.91602 1.19940 1.00254 0.98783 0.95470 1.20413 0.97393 0.99046 0.92593 1.18899 0.92213 0.94044 0.94623 1.21711 1.10411 1.22752 1.03456 0.92046 1.26021 0.96636 0.94977 1.02228 1.70118 1.18275 1.28989 1.40096 0.85477 0.77694 0.78681 0.79043 1.19069 1.20767 1.19047 1.20894 0.96722 0.95683 0.97657 1.20713 1.06565 1.03668 0.91057 1.17577 0.93400 0.92377 0.86780 1.42399 1.47337 1.47918 1.03544 0.93848 0.90477 0.93728 0.89416 0.92708 0.90738 0.93587 0.87148 0.92520 0.92696 0.99594 0.99539 0.92795 0.86535 0.84374 0.76489 0.76549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 8.95 71.98 0.64 -2.77 16 2 C -0.04 -0.90 3.04 -11.54 -0.04 -0.93 16 3 C -0.14 -2.79 9.05 71.98 0.65 -2.13 16 4 C -0.16 -4.63 4.80 -19.74 -0.09 -4.73 16 5 C -0.08 -2.85 8.39 22.25 0.19 -2.66 16 6 C -0.14 -5.70 5.14 -19.84 -0.10 -5.80 16 7 C -0.06 -2.59 5.28 29.85 0.16 -2.43 16 8 C 0.04 2.22 4.95 29.85 0.15 2.37 16 9 C -0.55 -32.42 9.11 25.60 0.23 -32.19 16 10 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 11 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 12 N -0.93 -58.98 13.29 21.45 0.28 -58.70 16 13 Si 0.97 45.41 29.54 68.60 2.03 47.43 16 14 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 15 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 17 C -0.09 -3.26 9.69 22.25 0.22 -3.05 16 18 C -0.20 -5.84 9.90 22.40 0.22 -5.62 16 19 C 0.20 5.52 6.74 38.21 0.26 5.78 16 20 N -0.87 -15.65 9.00 -51.37 -0.46 -16.12 16 21 H 0.04 1.17 7.13 -2.39 -0.02 1.15 16 22 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 23 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.09 1.53 5.68 -2.39 -0.01 1.51 16 25 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.04 1.04 7.69 -2.39 -0.02 1.03 16 28 H 0.11 3.98 7.10 -2.91 -0.02 3.96 16 29 H 0.06 2.48 8.09 -2.38 -0.02 2.46 16 30 H 0.05 2.41 8.08 -2.39 -0.02 2.39 16 31 H -0.01 -0.88 8.14 -2.38 -0.02 -0.90 16 32 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 33 H 0.26 15.57 8.31 -92.70 -0.77 14.79 16 34 H 0.12 4.05 8.06 -2.91 -0.02 4.03 16 35 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 36 H 0.41 5.51 8.85 -92.71 -0.82 4.69 16 37 H 0.40 5.82 6.48 -92.70 -0.60 5.22 16 Total: -1.00 -69.38 303.78 4.43 -64.95 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -0.36 Total: 16.20 kcal Atomic # 6 Polarization: -56.72 SS G_CDS: 2.95 Total: -53.77 kcal Atomic # 7 Polarization: -74.64 SS G_CDS: -0.18 Total: -74.82 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -69.38 4.43 -64.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059588.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.476 kcal (2) G-P(sol) polarization free energy of solvation -69.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds