Wall clock time and date at job start Thu Apr 9 2020 12:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47004 * 2 1 4 4 C 1.50697 * 109.47014 * 120.00196 * 2 1 3 5 5 C 1.38313 * 119.92207 * 299.99583 * 4 2 1 6 6 C 1.38088 * 120.07227 * 180.02562 * 5 4 2 7 7 C 1.38927 * 119.92585 * 0.23752 * 6 5 4 8 8 N 1.39669 * 120.07768 * 179.74380 * 7 6 5 9 9 C 1.38892 * 119.85071 * 359.51577 * 7 6 5 10 10 C 1.50704 * 120.03775 * 180.23162 * 9 7 6 11 11 C 1.52994 * 109.47237 * 280.27081 * 10 9 7 12 12 C 1.50695 * 109.47201 * 180.02562 * 11 10 9 13 13 H 1.08005 * 120.00160 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99998 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99924 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00037 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47324 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47247 * 120.00056 * 16 14 12 19 19 H 1.48504 * 109.47020 * 240.00217 * 16 14 12 20 20 C 1.38126 * 119.92272 * 0.50020 * 9 7 6 21 21 H 1.08996 * 109.47297 * 300.00046 * 1 2 3 22 22 H 1.08999 * 109.47087 * 60.00386 * 1 2 3 23 23 H 1.09001 * 109.46986 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46844 * 239.99671 * 2 1 3 25 25 H 1.09001 * 109.47336 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.46883 * 299.99739 * 3 2 1 27 27 H 1.08996 * 109.47131 * 59.99852 * 3 2 1 28 28 H 1.07999 * 119.96374 * 0.02562 * 5 4 2 29 29 H 1.08002 * 120.03354 * 179.97438 * 6 5 4 30 30 H 0.97008 * 120.00077 * 359.97438 * 8 7 6 31 31 H 0.96995 * 120.00716 * 180.02562 * 8 7 6 32 32 H 1.08999 * 109.47237 * 40.27299 * 10 9 7 33 33 H 1.09002 * 109.46621 * 160.26877 * 10 9 7 34 34 H 1.09004 * 109.47112 * 299.99763 * 11 10 9 35 35 H 1.09000 * 109.47298 * 59.99807 * 11 10 9 36 36 H 0.96999 * 119.99694 * 179.97438 * 15 14 12 37 37 H 1.08006 * 119.96320 * 179.75230 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6972 -0.2365 2.4859 6 6 2.1562 -0.8848 3.6154 7 6 2.9595 -2.0113 3.4898 8 7 3.4299 -2.6663 4.6301 9 6 3.2898 -2.4876 2.2276 10 6 4.1565 -3.7123 2.0864 11 6 5.6229 -3.3254 2.2882 12 6 6.4896 -4.5499 2.1464 13 1 6.0396 -5.5083 1.9332 14 6 7.8573 -4.4467 2.2878 15 7 8.4053 -3.2796 2.5470 16 14 8.9317 -5.9645 2.1114 17 1 8.0778 -7.1447 1.8230 18 1 9.8925 -5.7640 0.9970 19 1 9.6790 -6.1916 3.3745 20 6 2.8275 -1.8341 1.1018 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9562 -0.8900 27 1 1.6766 1.9563 0.8899 28 1 1.0759 0.6416 2.5828 29 1 1.8945 -0.5139 4.5954 30 1 3.1961 -2.3345 5.5112 31 1 3.9909 -3.4525 4.5412 32 1 3.8688 -4.4494 2.8360 33 1 4.0264 -4.1366 1.0908 34 1 5.9107 -2.5883 1.5385 35 1 5.7530 -2.9010 3.2837 36 1 9.3674 -3.2070 2.6468 37 1 3.0873 -2.2015 0.1200 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250059874.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:44 Heat of formation + Delta-G solvation = -12.298705 kcal Electronic energy + Delta-G solvation = -15984.895680 eV Core-core repulsion = 13532.334551 eV Total energy + Delta-G solvation = -2452.561129 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.38604 -36.15898 -33.71673 -32.80758 -31.87189 -29.11060 -27.45064 -27.00907 -24.92450 -22.37451 -22.01185 -20.82865 -18.74031 -16.69223 -16.51349 -16.25511 -15.09175 -14.47566 -14.26033 -13.55259 -13.46313 -13.38110 -12.78500 -12.58780 -12.48284 -12.24195 -12.14999 -11.99887 -11.24094 -11.09862 -10.97535 -10.81772 -10.66131 -10.42396 -10.24132 -9.92998 -9.74386 -9.53968 -9.04154 -8.34581 -8.12033 -6.83867 -5.99136 -4.02497 1.97660 2.11842 3.30367 3.38153 3.42031 4.33189 4.44708 4.48138 4.99255 5.04973 5.36109 5.38864 5.41696 5.47959 5.68347 5.71112 5.84648 5.90698 5.92917 6.08367 6.10130 6.28754 6.37422 6.39295 6.40613 6.53930 6.72990 6.86240 7.03754 7.10566 7.24425 7.44717 7.71168 7.85021 8.00788 8.06142 8.30665 8.42300 9.05619 9.61755 11.11495 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.033356 B = 0.005516 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.216741 B = 5074.902098 C = 5451.915831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.047 4.047 3 C -0.143 4.143 4 C -0.141 4.141 5 C -0.082 4.082 6 C -0.203 4.203 7 C 0.218 3.782 8 N -0.876 5.876 9 C -0.134 4.134 10 C -0.071 4.071 11 C 0.028 3.972 12 C -0.522 4.522 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.893 5.893 16 Si 0.890 3.110 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.285 1.285 20 C -0.072 4.072 21 H 0.053 0.947 22 H 0.050 0.950 23 H 0.053 0.947 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.390 0.610 31 H 0.405 0.595 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.016 0.984 35 H 0.018 0.982 36 H 0.259 0.741 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.082 6.141 -0.732 15.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.066 4.066 3 C -0.200 4.200 4 C -0.143 4.143 5 C -0.101 4.101 6 C -0.227 4.227 7 C 0.113 3.887 8 N -0.415 5.415 9 C -0.139 4.139 10 C -0.109 4.109 11 C -0.009 4.009 12 C -0.561 4.561 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.718 3.282 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.091 4.091 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.217 0.783 31 H 0.236 0.764 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.035 0.965 35 H 0.037 0.963 36 H 0.069 0.931 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.917 6.226 -0.733 15.264 hybrid contribution 0.941 -0.887 0.314 1.330 sum -12.977 5.339 -0.419 14.039 Atomic orbital electron populations 1.21846 0.95233 1.01621 1.01127 1.19944 0.95118 0.95625 0.95900 1.21852 1.01463 0.95598 1.01072 1.19432 1.02765 0.98044 0.94033 1.20461 0.99298 0.98684 0.91630 1.20424 1.05340 0.98488 0.98400 1.17629 0.92430 0.91424 0.87265 1.42606 1.59137 1.34672 1.05082 1.19800 1.02140 1.00788 0.91140 1.20624 0.96853 0.92580 1.00809 1.19089 0.87780 0.96623 0.97407 1.21326 0.91655 0.94718 1.48355 0.92644 1.25024 0.98204 0.95800 0.95344 1.69991 1.10961 1.23259 1.49053 0.86571 0.80597 0.83382 0.77659 1.19739 1.21020 1.21074 1.20711 0.96170 0.94536 0.97672 0.92809 0.93121 0.92751 0.91036 0.92466 0.93122 0.92808 0.87207 0.87128 0.78349 0.76377 0.93025 0.92444 0.96528 0.96323 0.93093 0.86669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.01 37.16 0.33 -1.17 16 2 C -0.05 -0.60 3.09 -91.77 -0.28 -0.88 16 3 C -0.14 -1.65 9.01 37.16 0.33 -1.31 16 4 C -0.14 -2.16 4.78 -104.59 -0.50 -2.66 16 5 C -0.08 -1.21 8.70 -39.61 -0.34 -1.56 16 6 C -0.20 -3.18 9.90 -39.38 -0.39 -3.57 16 7 C 0.22 3.84 6.73 -83.79 -0.56 3.27 16 8 N -0.88 -13.91 8.86 32.41 0.29 -13.63 16 9 C -0.13 -2.58 5.15 -104.42 -0.54 -3.11 16 10 C -0.07 -1.50 4.64 -27.88 -0.13 -1.63 16 11 C 0.03 0.73 4.85 -27.89 -0.14 0.60 16 12 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 13 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 16 Si 0.89 21.62 29.54 -169.99 -5.02 16.59 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 C -0.07 -1.27 9.29 -39.61 -0.37 -1.64 16 21 H 0.05 0.55 7.38 -51.93 -0.38 0.17 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.89 7.87 -51.93 -0.41 0.48 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.59 7.38 -51.93 -0.38 0.21 16 28 H 0.11 1.37 7.09 -52.49 -0.37 1.00 16 29 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.39 5.00 8.84 -40.82 -0.36 4.64 16 31 H 0.41 6.91 6.48 -40.82 -0.26 6.65 16 32 H 0.05 1.04 7.11 -51.93 -0.37 0.67 16 33 H 0.06 1.19 8.00 -51.93 -0.42 0.78 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.02 0.50 7.49 -51.93 -0.39 0.12 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.12 1.93 7.92 -52.48 -0.42 1.51 16 LS Contribution 303.11 15.07 4.57 4.57 Total: -1.00 -30.49 303.11 -8.26 -38.75 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -5.84 Total: 7.12 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: -3.00 Total: -27.14 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 1.02 Total: -39.89 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.49 -8.26 -38.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059874.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.454 kcal (2) G-P(sol) polarization free energy of solvation -30.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds