Wall clock time and date at job start Thu Apr 9 2020 12:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 119.99658 * 2 1 4 4 H 1.48503 * 109.46935 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47514 * 300.00019 * 3 2 1 6 6 H 1.48504 * 109.46992 * 60.00234 * 3 2 1 7 7 C 1.37869 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99541 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00158 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47059 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46681 * 179.97438 * 10 9 7 12 12 C 1.37855 * 119.99540 * 264.99683 * 11 10 9 13 13 C 1.38698 * 120.70869 * 180.28237 * 12 11 10 14 14 C 1.37987 * 120.24429 * 359.42154 * 13 12 11 15 15 F 1.35107 * 120.21995 * 180.29683 * 14 13 12 16 16 C 1.39559 * 119.55883 * 0.56837 * 14 13 12 17 17 C 1.46792 * 134.34514 * 179.73022 * 16 14 13 18 18 C 1.33973 * 106.18278 * 179.97438 * 17 16 14 19 19 O 1.34467 * 110.15313 * 0.02562 * 18 17 16 20 20 C 1.34839 * 110.88992 * 359.97438 * 19 18 17 21 21 H 0.97001 * 120.00241 * 0.02562 * 1 2 3 22 22 H 1.08991 * 109.46873 * 60.00021 * 9 7 2 23 23 H 1.08999 * 109.47152 * 299.99984 * 9 7 2 24 24 H 1.08998 * 109.47046 * 59.99634 * 10 9 7 25 25 H 1.08999 * 109.46953 * 299.99894 * 10 9 7 26 26 H 1.08002 * 119.64197 * 0.02562 * 12 11 10 27 27 H 1.08006 * 119.87638 * 179.72582 * 13 12 11 28 28 H 1.08006 * 126.90333 * 359.96199 * 17 16 14 29 29 H 1.08000 * 124.92493 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4918 -4.9671 -0.0020 12 6 1.2369 -5.6162 1.1872 13 6 0.5498 -6.8209 1.2034 14 6 0.1007 -7.3808 0.0249 15 9 -0.5738 -8.5514 0.0418 16 6 0.3529 -6.7328 -1.1852 17 6 0.0422 -7.0250 -2.5898 18 6 0.5539 -6.0134 -3.3036 19 8 1.1494 -5.1255 -2.4880 20 6 1.0541 -5.5159 -1.2009 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5562 -0.8919 23 1 0.6241 -2.5575 0.8880 24 1 2.8714 -3.6046 0.8890 25 1 2.8727 -3.6039 -0.8909 26 1 1.5795 -5.1840 2.1158 27 1 0.3612 -7.3202 2.1424 28 1 -0.4914 -7.8832 -2.9710 29 1 0.4971 -5.9243 -4.3784 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060123.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:46 Heat of formation + Delta-G solvation = -33.208901 kcal Electronic energy + Delta-G solvation = -15543.950605 eV Core-core repulsion = 12733.470680 eV Total energy + Delta-G solvation = -2810.479925 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.080 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.71038 -42.21944 -37.75268 -34.19633 -32.59797 -31.37654 -29.41404 -28.43943 -25.01542 -22.93483 -22.40115 -21.39306 -19.95468 -17.84399 -17.19991 -16.38820 -16.06809 -15.98746 -15.14634 -14.75261 -14.51317 -14.26980 -13.42523 -13.11912 -12.60857 -12.52421 -12.26316 -11.80398 -11.52867 -11.44993 -10.94695 -10.88140 -10.54286 -10.01059 -9.88389 -9.47797 -9.10803 -8.47322 -8.35729 -7.71102 -6.00574 -4.03783 1.01494 1.44844 2.48138 3.00520 3.30756 3.38233 3.42205 3.76271 4.33351 4.45267 4.51992 4.94171 4.99206 5.27757 5.35221 5.42922 5.52918 5.69760 6.01910 6.15106 6.19261 6.38235 6.44843 6.59563 6.74847 6.83618 6.98807 7.35348 7.65946 7.78101 7.98471 8.38460 9.03055 9.60343 11.10561 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.037318 B = 0.006051 C = 0.005575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.125715 B = 4626.195447 C = 5021.487938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.029 3.971 10 C -0.078 4.078 11 C -0.049 4.049 12 C -0.079 4.079 13 C -0.161 4.161 14 C 0.118 3.882 15 F -0.142 7.142 16 C -0.168 4.168 17 C -0.212 4.212 18 C 0.012 3.988 19 O -0.179 6.179 20 C 0.085 3.915 21 H 0.260 0.740 22 H 0.018 0.982 23 H 0.019 0.981 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.145 0.855 27 H 0.138 0.862 28 H 0.156 0.844 29 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.109 -13.871 -2.348 14.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.008 4.008 10 C -0.116 4.116 11 C -0.049 4.049 12 C -0.097 4.097 13 C -0.180 4.180 14 C 0.099 3.901 15 F -0.120 7.120 16 C -0.170 4.170 17 C -0.231 4.231 18 C -0.054 4.054 19 O -0.079 6.079 20 C 0.037 3.963 21 H 0.070 0.930 22 H 0.036 0.964 23 H 0.037 0.963 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.162 0.838 27 H 0.155 0.845 28 H 0.174 0.826 29 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 1.070 -13.552 -2.427 13.809 hybrid contribution 0.001 0.523 -0.114 0.535 sum 1.071 -13.029 -2.542 13.318 Atomic orbital electron populations 1.69985 1.06077 1.26527 1.50734 1.25022 0.94832 0.99262 0.95276 0.86534 0.80118 0.83758 0.77583 1.19686 1.21017 1.21002 1.21258 0.93097 0.90825 1.50725 0.92455 1.19091 0.93639 0.90417 0.97619 1.20843 0.98447 0.90354 1.01936 1.19420 0.99642 0.97992 0.87896 1.20690 0.98152 0.93586 0.97318 1.20956 1.02516 0.97911 0.96632 1.16873 0.97475 0.83253 0.92527 1.91446 1.77937 1.45300 1.97349 1.19837 1.05744 0.97801 0.93607 1.22339 1.07956 1.02338 0.90493 1.23976 0.96406 0.88591 0.96406 1.84134 1.64211 1.44843 1.14711 1.19232 0.99731 0.93109 0.84199 0.93022 0.96406 0.96289 0.91466 0.91771 0.83769 0.84458 0.82616 0.77550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.99 13.29 55.43 0.74 -26.26 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 15 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 15 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 5 H -0.28 -6.82 7.11 56.52 0.40 -6.41 15 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 7 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 15 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 15 9 C 0.03 0.76 4.96 -27.88 -0.14 0.63 15 10 C -0.08 -1.63 5.29 -27.88 -0.15 -1.77 15 11 C -0.05 -0.91 5.14 -104.51 -0.54 -1.45 15 12 C -0.08 -1.25 9.64 -39.55 -0.38 -1.63 15 13 C -0.16 -2.35 10.01 -39.50 -0.40 -2.75 15 14 C 0.12 1.89 7.34 -39.18 -0.29 1.60 15 15 F -0.14 -2.18 17.28 2.25 0.04 -2.14 15 16 C -0.17 -2.84 6.38 -105.11 -0.67 -3.51 15 17 C -0.21 -2.97 11.14 -37.63 -0.42 -3.39 15 18 C 0.01 0.16 11.96 29.23 0.35 0.51 15 19 O -0.18 -3.20 10.58 3.77 0.04 -3.16 15 20 C 0.09 1.58 7.09 -38.49 -0.27 1.31 15 21 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 22 H 0.02 0.50 8.14 -51.93 -0.42 0.08 15 23 H 0.02 0.51 8.14 -51.93 -0.42 0.09 15 24 H 0.07 1.28 8.05 -51.93 -0.42 0.86 15 25 H 0.06 1.33 8.12 -51.93 -0.42 0.91 15 26 H 0.14 1.96 8.06 -52.49 -0.42 1.54 15 27 H 0.14 1.59 8.06 -52.48 -0.42 1.17 15 28 H 0.16 1.73 8.06 -52.48 -0.42 1.30 15 29 H 0.21 1.73 8.06 -52.49 -0.42 1.31 15 LS Contribution 266.26 15.07 4.01 4.01 Total: -1.00 -31.83 266.26 -6.42 -38.25 By element: Atomic # 1 Polarization: -0.44 SS G_CDS: -2.92 Total: -3.35 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -3.31 Total: -23.90 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.74 Total: -26.26 kcal Atomic # 8 Polarization: -3.20 SS G_CDS: 0.04 Total: -3.16 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.83 -6.42 -38.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060123.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.041 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds