Wall clock time and date at job start Thu Apr 9 2020 12:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38131 * 120.03982 * 2 1 4 4 C 1.38256 * 120.07627 * 180.27750 * 3 2 1 5 5 C 1.50704 * 119.92851 * 179.76726 * 4 3 2 6 6 C 1.52998 * 109.47182 * 269.98161 * 5 4 3 7 7 C 1.50699 * 109.47298 * 179.97438 * 6 5 4 8 8 H 1.08004 * 119.99344 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00290 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99914 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99922 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47332 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47169 * 120.00163 * 11 9 7 14 14 H 1.48501 * 109.47207 * 239.99874 * 11 9 7 15 15 C 1.38307 * 120.15117 * 359.74519 * 4 3 2 16 16 C 1.38083 * 120.07269 * 0.02562 * 15 4 3 17 17 C 1.38888 * 120.03678 * 179.79163 * 2 1 3 18 18 N 1.39675 * 120.07799 * 0.02562 * 17 2 1 19 19 C 1.46901 * 110.99733 * 239.72401 * 18 17 2 20 20 C 1.46898 * 111.00076 * 115.76576 * 18 17 2 21 21 H 1.08999 * 109.46483 * 270.21033 * 1 2 3 22 22 H 1.09003 * 109.47215 * 30.20796 * 1 2 3 23 23 H 1.08994 * 109.47446 * 150.21016 * 1 2 3 24 24 H 1.07998 * 119.96150 * 0.02562 * 3 2 1 25 25 H 1.09002 * 109.46602 * 29.97468 * 5 4 3 26 26 H 1.08994 * 109.47116 * 149.97244 * 5 4 3 27 27 H 1.08999 * 109.46931 * 299.99687 * 6 5 4 28 28 H 1.09001 * 109.47009 * 59.99533 * 6 5 4 29 29 H 0.96996 * 120.00275 * 180.02562 * 10 9 7 30 30 H 1.07998 * 119.96686 * 179.97438 * 15 4 3 31 31 H 1.08004 * 120.03462 * 179.97438 * 16 15 4 32 32 H 1.09002 * 109.47401 * 59.99521 * 19 18 17 33 33 H 1.09001 * 109.46874 * 299.99534 * 19 18 17 34 34 H 1.09004 * 109.46970 * 179.97438 * 19 18 17 35 35 H 1.09006 * 109.46770 * 179.97438 * 20 18 17 36 36 H 1.09001 * 109.47456 * 300.00035 * 20 18 17 37 37 H 1.09000 * 109.46814 * 60.00340 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1958 0.0000 4 6 3.5810 1.1967 -0.0058 5 6 4.3321 2.5032 -0.0111 6 6 4.5806 2.9428 -1.4553 7 6 5.3311 4.2496 -1.4606 8 1 5.6031 4.7198 -0.5272 9 6 5.6703 4.8449 -2.6571 10 7 5.3386 4.2726 -3.7937 11 14 6.6012 6.4644 -2.6635 12 1 6.8534 6.8960 -1.2652 13 1 7.8965 6.2880 -3.3679 14 1 5.7942 7.4965 -3.3627 15 6 4.2765 0.0012 -0.0063 16 6 3.5915 -1.1978 -0.0015 17 6 2.2022 -1.2024 0.0044 18 7 1.5063 -2.4134 0.0082 19 6 1.8430 -3.2102 1.1955 20 6 1.7613 -3.1711 -1.2241 21 1 -0.3632 0.0038 1.0277 22 1 -0.3634 0.8881 -0.5171 23 1 -0.3634 -0.8918 -0.5105 24 1 1.6585 2.1311 0.0004 25 1 3.7434 3.2626 0.5036 26 1 5.2866 2.3756 0.4994 27 1 5.1691 2.1833 -1.9701 28 1 3.6259 3.0703 -1.9657 29 1 5.5775 4.6912 -4.6354 30 1 5.3565 0.0053 -0.0112 31 1 4.1352 -2.1310 -0.0023 32 1 1.5793 -2.6526 2.0942 33 1 2.9123 -3.4216 1.1998 34 1 1.2871 -4.1476 1.1736 35 1 1.2077 -4.1096 -1.1947 36 1 1.4381 -2.5850 -2.0845 37 1 2.8276 -3.3811 -1.3074 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060489.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:49 Heat of formation + Delta-G solvation = 11.633795 kcal Electronic energy + Delta-G solvation = -15909.533292 eV Core-core repulsion = 13458.009954 eV Total energy + Delta-G solvation = -2451.523338 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.79726 -36.76053 -33.82026 -32.48539 -31.35807 -28.62447 -27.62193 -26.61627 -25.40534 -23.44258 -21.46987 -21.16354 -19.33984 -16.64240 -16.30226 -15.72367 -15.03091 -14.58888 -14.43568 -13.75084 -13.70576 -13.20994 -12.92160 -12.53745 -12.47917 -12.43398 -12.03270 -11.87202 -11.77175 -11.62540 -11.21058 -10.98693 -10.81960 -10.65941 -10.45358 -9.81298 -9.56440 -9.07465 -8.48027 -8.38560 -8.32143 -7.88318 -5.99253 -4.02361 1.69000 1.77653 3.31338 3.38791 3.42927 3.94071 4.09337 4.46761 5.09042 5.17273 5.22239 5.27171 5.36370 5.41958 5.44245 5.47818 5.73793 5.75988 5.81766 5.87318 5.91677 5.98066 6.05968 6.16954 6.35127 6.59897 6.67167 6.77279 6.83978 6.86744 7.01758 7.17656 7.22697 7.63660 7.69094 7.83216 8.00905 8.41406 9.05001 9.61763 11.11842 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.045579 B = 0.004801 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.168026 B = 5830.114640 C = 5901.085687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.061 4.061 3 C -0.118 4.118 4 C -0.052 4.052 5 C -0.081 4.081 6 C 0.030 3.970 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.057 3.943 10 N -0.894 5.894 11 Si 0.892 3.108 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.284 1.284 15 C -0.118 4.118 16 C -0.143 4.143 17 C 0.057 3.943 18 N -0.504 5.504 19 C 0.029 3.971 20 C 0.028 3.972 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.072 0.928 24 H 0.123 0.877 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.017 0.983 28 H 0.018 0.982 29 H 0.260 0.740 30 H 0.119 0.881 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.028 0.972 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.557 -13.250 8.056 17.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.062 4.062 3 C -0.136 4.136 4 C -0.052 4.052 5 C -0.118 4.118 6 C -0.007 4.007 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.144 4.144 10 N -0.534 5.534 11 Si 0.719 3.281 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.137 4.137 16 C -0.163 4.163 17 C -0.037 4.037 18 N -0.225 5.225 19 C -0.118 4.118 20 C -0.119 4.119 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.091 0.909 24 H 0.141 0.859 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.070 0.930 30 H 0.137 0.863 31 H 0.129 0.871 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -8.064 -13.151 7.884 17.325 hybrid contribution 1.530 0.631 -0.252 1.674 sum -6.533 -12.520 7.633 16.053 Atomic orbital electron populations 1.20600 0.91140 1.02381 1.01684 1.19711 0.96021 0.91407 0.99077 1.20944 0.93821 0.97189 1.01681 1.20391 0.93773 0.96264 0.94735 1.20850 0.97948 0.91248 1.01748 1.19071 0.97027 0.95905 0.88698 1.21301 1.36013 1.06315 0.92358 0.92538 1.25024 0.96081 0.97646 0.95660 1.69983 1.46954 1.39172 0.97257 0.86543 0.79626 0.83798 0.78085 1.19706 1.21029 1.20994 1.20911 0.99777 0.91659 1.01332 1.21428 0.94397 0.97992 1.02489 1.18439 0.90118 0.90239 1.04885 1.59556 1.56785 1.03252 1.02888 1.22410 0.98954 0.97488 0.92921 1.22437 0.99456 0.97938 0.92094 0.91942 0.92305 0.90876 0.85898 0.92186 0.92276 0.96501 0.96405 0.93047 0.86307 0.87131 0.91352 0.95339 0.91408 0.91393 0.91120 0.95275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 9.77 36.01 0.35 -0.96 16 2 C -0.06 -0.97 5.90 -104.42 -0.62 -1.58 16 3 C -0.12 -2.06 9.35 -39.61 -0.37 -2.43 16 4 C -0.05 -0.98 5.14 -104.59 -0.54 -1.51 16 5 C -0.08 -1.70 5.28 -27.88 -0.15 -1.85 16 6 C 0.03 0.79 4.95 -27.88 -0.14 0.65 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 10 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 11 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 C -0.12 -2.06 9.69 -39.61 -0.38 -2.44 16 16 C -0.14 -2.23 8.57 -39.38 -0.34 -2.56 16 17 C 0.06 0.86 4.71 -83.79 -0.39 0.46 16 18 N -0.50 -6.42 3.94 -186.85 -0.74 -7.15 16 19 C 0.03 0.31 9.34 60.07 0.56 0.87 16 20 C 0.03 0.31 9.38 60.06 0.56 0.88 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 22 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 23 H 0.07 0.92 7.46 -51.93 -0.39 0.54 16 24 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 25 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 26 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 31 H 0.11 1.51 7.02 -52.48 -0.37 1.14 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.03 0.29 7.12 -51.93 -0.37 -0.08 16 34 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 35 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.03 0.33 7.34 -51.93 -0.38 -0.06 16 LS Contribution 307.05 15.07 4.63 4.63 Total: -1.00 -30.64 307.05 -8.36 -39.00 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -6.11 Total: -2.62 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: -1.86 Total: -24.11 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.00 Total: -33.61 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.64 -8.36 -39.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060489.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.638 kcal (2) G-P(sol) polarization free energy of solvation -30.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds