Wall clock time and date at job start Thu Apr 9 2020 12:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38098 * 120.04218 * 2 1 4 4 C 1.38285 * 120.08000 * 180.27488 * 3 2 1 5 5 C 1.50689 * 119.92991 * 179.71972 * 4 3 2 6 6 C 1.52995 * 109.47479 * 270.02405 * 5 4 3 7 7 C 1.53004 * 109.47578 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47307 * 179.97438 * 7 6 5 9 9 H 1.07997 * 120.00125 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99653 * 179.97438 * 8 7 6 11 11 N 1.31517 * 120.00403 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99634 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47307 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47244 * 119.99915 * 12 10 8 15 15 H 1.48501 * 109.46856 * 239.99902 * 12 10 8 16 16 C 1.38293 * 120.14390 * 359.74118 * 4 3 2 17 17 C 1.38103 * 120.07544 * 0.02562 * 16 4 3 18 18 C 1.50703 * 120.03652 * 180.02562 * 17 16 4 19 19 C 1.38912 * 120.03243 * 179.76155 * 2 1 3 20 20 N 1.39671 * 120.08022 * 0.02562 * 19 2 1 21 21 H 1.09004 * 109.47293 * 270.23949 * 1 2 3 22 22 H 1.09001 * 109.47141 * 30.23412 * 1 2 3 23 23 H 1.08997 * 109.47284 * 150.23199 * 1 2 3 24 24 H 1.08005 * 119.96252 * 0.02562 * 3 2 1 25 25 H 1.09007 * 109.47274 * 30.02491 * 5 4 3 26 26 H 1.09003 * 109.47687 * 150.01881 * 5 4 3 27 27 H 1.09004 * 109.46638 * 299.99599 * 6 5 4 28 28 H 1.09002 * 109.47363 * 59.99838 * 6 5 4 29 29 H 1.08999 * 109.46612 * 300.00221 * 7 6 5 30 30 H 1.09002 * 109.46902 * 59.99561 * 7 6 5 31 31 H 0.96996 * 119.99884 * 179.97438 * 11 10 8 32 32 H 1.08001 * 119.95790 * 179.97438 * 16 4 3 33 33 H 1.08989 * 109.47248 * 269.98178 * 18 17 16 34 34 H 1.09007 * 109.46661 * 29.98371 * 18 17 16 35 35 H 1.08994 * 109.47035 * 149.97661 * 18 17 16 36 36 H 0.97001 * 120.00529 * 179.72551 * 20 19 2 37 37 H 0.97005 * 119.99745 * 359.44100 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1955 0.0000 4 6 3.5812 1.1964 -0.0057 5 6 4.3322 2.5028 -0.0121 6 6 4.5799 2.9417 -1.4567 7 6 5.3418 4.2685 -1.4632 8 6 5.5863 4.7005 -2.8860 9 1 5.2339 4.0896 -3.7040 10 6 6.2599 5.8756 -3.1436 11 7 6.6886 6.6198 -2.1476 12 14 6.5623 6.4115 -4.9074 13 1 5.9841 5.4072 -5.8359 14 1 5.9202 7.7299 -5.1413 15 1 8.0236 6.5230 -5.1472 16 6 4.2765 0.0009 -0.0061 17 6 3.5914 -1.1982 -0.0013 18 6 4.3499 -2.5004 -0.0011 19 6 2.2023 -1.2026 0.0050 20 7 1.5063 -2.4136 0.0095 21 1 -0.3634 0.0043 1.0277 22 1 -0.3633 0.8879 -0.5175 23 1 -0.3634 -0.8920 -0.5102 24 1 1.6584 2.1309 0.0004 25 1 3.7440 3.2626 0.5027 26 1 5.2872 2.3756 0.4978 27 1 5.1682 2.1820 -1.9714 28 1 3.6249 3.0691 -1.9666 29 1 4.7532 5.0280 -0.9485 30 1 6.2967 4.1416 -0.9531 31 1 7.1628 7.4464 -2.3289 32 1 5.3565 0.0052 -0.0110 33 1 4.5290 -2.8166 -1.0286 34 1 5.3037 -2.3651 0.5091 35 1 3.7657 -3.2610 0.5167 36 1 1.9929 -3.2527 0.0090 37 1 0.5363 -2.4154 0.0173 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065364.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:55 Heat of formation + Delta-G solvation = -12.308965 kcal Electronic energy + Delta-G solvation = -15611.552799 eV Core-core repulsion = 13158.991225 eV Total energy + Delta-G solvation = -2452.561574 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.70087 -35.70187 -33.65869 -33.44497 -31.98250 -29.79809 -27.54403 -26.53805 -25.78611 -23.23947 -20.79072 -20.40992 -19.52740 -17.25912 -16.87488 -16.16880 -14.53322 -14.49708 -14.17670 -14.11892 -13.51068 -13.46378 -13.18661 -12.72399 -12.70112 -12.35296 -12.09272 -11.96612 -11.62972 -11.18937 -11.00425 -10.83890 -10.74901 -10.54740 -10.36564 -10.03768 -9.54814 -9.18126 -8.94934 -8.33157 -8.27621 -7.15597 -5.93066 -3.94725 1.63010 1.87203 3.35243 3.42417 3.47369 3.91520 4.03805 4.52155 4.91333 4.95852 5.16045 5.34053 5.42524 5.50110 5.59651 5.60948 5.62944 5.68440 5.82918 5.88263 5.99102 6.19904 6.27994 6.38570 6.54277 6.55890 6.74606 6.79245 7.06278 7.14199 7.18276 7.27602 7.60033 7.76265 7.77551 7.93686 8.08777 8.52403 9.13112 9.68928 11.18308 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.037062 B = 0.004468 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.309615 B = 6265.681878 C = 6465.333828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.162 4.162 3 C -0.077 4.077 4 C -0.112 4.112 5 C -0.077 4.077 6 C -0.102 4.102 7 C 0.019 3.981 8 C -0.517 4.517 9 H 0.055 0.945 10 C 0.055 3.945 11 N -0.897 5.897 12 Si 0.890 3.110 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.077 4.077 17 C -0.162 4.162 18 C -0.102 4.102 19 C 0.201 3.799 20 N -0.883 5.883 21 H 0.061 0.939 22 H 0.065 0.935 23 H 0.055 0.945 24 H 0.119 0.881 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.015 0.985 30 H 0.015 0.985 31 H 0.259 0.741 32 H 0.119 0.881 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.393 0.607 37 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.042 -17.513 6.113 21.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.167 4.167 3 C -0.096 4.096 4 C -0.114 4.114 5 C -0.115 4.115 6 C -0.140 4.140 7 C -0.018 4.018 8 C -0.555 4.555 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.537 5.537 12 Si 0.718 3.282 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.211 1.211 16 C -0.096 4.096 17 C -0.167 4.167 18 C -0.158 4.158 19 C 0.098 3.902 20 N -0.426 5.426 21 H 0.079 0.921 22 H 0.084 0.916 23 H 0.073 0.927 24 H 0.137 0.863 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.033 0.967 30 H 0.033 0.967 31 H 0.068 0.932 32 H 0.137 0.863 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.222 0.778 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -9.928 -17.312 6.142 20.880 hybrid contribution 0.058 0.104 -0.990 0.997 sum -9.869 -17.208 5.152 20.495 Atomic orbital electron populations 1.20553 0.91825 1.02044 1.01442 1.19274 0.95332 0.91827 1.10229 1.20714 0.93652 0.96650 0.98534 1.19906 0.93530 0.95550 1.02379 1.20660 0.98838 0.92476 0.99492 1.21613 1.00075 0.99534 0.92755 1.19138 0.95045 0.90813 0.96805 1.21337 1.35464 1.05993 0.92742 0.92719 1.25027 0.95893 0.96694 0.96916 1.69980 1.39033 1.14069 1.30590 0.86570 0.77837 0.78499 0.85315 1.19769 1.21055 1.21061 1.20717 0.99371 0.90930 0.98537 1.19277 0.91488 0.95675 1.10225 1.20552 0.99556 0.94134 1.01607 1.17303 0.90571 0.85927 0.96401 1.42518 1.08602 1.05104 1.86353 0.92050 0.91552 0.92661 0.86287 0.91862 0.91863 0.93507 0.93508 0.96657 0.96666 0.93161 0.86286 0.91909 0.91642 0.92722 0.77784 0.77786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 9.57 36.01 0.34 -0.70 16 2 C -0.16 -2.18 5.90 -104.42 -0.62 -2.80 16 3 C -0.08 -1.17 9.35 -39.62 -0.37 -1.54 16 4 C -0.11 -1.84 5.14 -104.59 -0.54 -2.38 16 5 C -0.08 -1.41 5.34 -27.89 -0.15 -1.56 16 6 C -0.10 -2.23 5.13 -26.73 -0.14 -2.36 16 7 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 8 C -0.52 -15.15 9.11 -34.44 -0.31 -15.47 16 9 H 0.05 1.57 7.74 -52.49 -0.41 1.16 16 10 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 11 N -0.90 -27.58 13.29 55.43 0.74 -26.84 16 12 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 13 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 16 C -0.08 -1.17 9.35 -39.61 -0.37 -1.54 16 17 C -0.16 -2.18 5.90 -104.42 -0.62 -2.80 16 18 C -0.10 -1.04 9.57 36.01 0.34 -0.70 16 19 C 0.20 2.59 6.72 -83.79 -0.56 2.02 16 20 N -0.88 -8.18 8.89 32.41 0.29 -7.89 16 21 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 23 H 0.05 0.48 6.56 -51.93 -0.34 0.13 16 24 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 25 H 0.06 1.13 8.08 -51.92 -0.42 0.71 16 26 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.06 0.61 8.14 -51.94 -0.42 0.19 16 34 H 0.06 0.63 8.09 -51.92 -0.42 0.21 16 35 H 0.05 0.46 6.55 -51.93 -0.34 0.12 16 36 H 0.39 2.97 6.83 -40.82 -0.28 2.70 16 37 H 0.39 2.97 6.83 -40.82 -0.28 2.70 16 LS Contribution 304.65 15.07 4.59 4.59 Total: -1.00 -31.97 304.65 -8.46 -40.43 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -5.84 Total: 0.48 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: -3.22 Total: -27.91 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 1.02 Total: -34.74 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.97 -8.46 -40.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065364.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.123 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds