Wall clock time and date at job start Thu Apr 9 2020 12:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38098 * 120.04218 * 2 1 4 4 C 1.38285 * 120.08000 * 180.27488 * 3 2 1 5 5 C 1.50689 * 119.92991 * 179.71972 * 4 3 2 6 6 C 1.52995 * 109.47479 * 270.02405 * 5 4 3 7 7 C 1.53004 * 109.47578 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47307 * 179.97438 * 7 6 5 9 9 H 1.07997 * 120.00125 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99653 * 179.97438 * 8 7 6 11 11 N 1.31517 * 120.00403 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99634 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47307 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47244 * 119.99915 * 12 10 8 15 15 H 1.48501 * 109.46856 * 239.99902 * 12 10 8 16 16 C 1.38293 * 120.14390 * 359.74118 * 4 3 2 17 17 C 1.38103 * 120.07544 * 0.02562 * 16 4 3 18 18 C 1.50703 * 120.03652 * 180.02562 * 17 16 4 19 19 C 1.38912 * 120.03243 * 179.76155 * 2 1 3 20 20 N 1.39671 * 120.08022 * 0.02562 * 19 2 1 21 21 H 1.09004 * 109.47293 * 270.23949 * 1 2 3 22 22 H 1.09001 * 109.47141 * 30.23412 * 1 2 3 23 23 H 1.08997 * 109.47284 * 150.23199 * 1 2 3 24 24 H 1.08005 * 119.96252 * 0.02562 * 3 2 1 25 25 H 1.09007 * 109.47274 * 30.02491 * 5 4 3 26 26 H 1.09003 * 109.47687 * 150.01881 * 5 4 3 27 27 H 1.09004 * 109.46638 * 299.99599 * 6 5 4 28 28 H 1.09002 * 109.47363 * 59.99838 * 6 5 4 29 29 H 1.08999 * 109.46612 * 300.00221 * 7 6 5 30 30 H 1.09002 * 109.46902 * 59.99561 * 7 6 5 31 31 H 0.96996 * 119.99884 * 179.97438 * 11 10 8 32 32 H 1.08001 * 119.95790 * 179.97438 * 16 4 3 33 33 H 1.08989 * 109.47248 * 269.98178 * 18 17 16 34 34 H 1.09007 * 109.46661 * 29.98371 * 18 17 16 35 35 H 1.08994 * 109.47035 * 149.97661 * 18 17 16 36 36 H 0.97001 * 120.00529 * 179.72551 * 20 19 2 37 37 H 0.97005 * 119.99745 * 359.44100 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1955 0.0000 4 6 3.5812 1.1964 -0.0057 5 6 4.3322 2.5028 -0.0121 6 6 4.5799 2.9417 -1.4567 7 6 5.3418 4.2685 -1.4632 8 6 5.5863 4.7005 -2.8860 9 1 5.2339 4.0896 -3.7040 10 6 6.2599 5.8756 -3.1436 11 7 6.6886 6.6198 -2.1476 12 14 6.5623 6.4115 -4.9074 13 1 5.9841 5.4072 -5.8359 14 1 5.9202 7.7299 -5.1413 15 1 8.0236 6.5230 -5.1472 16 6 4.2765 0.0009 -0.0061 17 6 3.5914 -1.1982 -0.0013 18 6 4.3499 -2.5004 -0.0011 19 6 2.2023 -1.2026 0.0050 20 7 1.5063 -2.4136 0.0095 21 1 -0.3634 0.0043 1.0277 22 1 -0.3633 0.8879 -0.5175 23 1 -0.3634 -0.8920 -0.5102 24 1 1.6584 2.1309 0.0004 25 1 3.7440 3.2626 0.5027 26 1 5.2872 2.3756 0.4978 27 1 5.1682 2.1820 -1.9714 28 1 3.6249 3.0691 -1.9666 29 1 4.7532 5.0280 -0.9485 30 1 6.2967 4.1416 -0.9531 31 1 7.1628 7.4464 -2.3289 32 1 5.3565 0.0052 -0.0110 33 1 4.5290 -2.8166 -1.0286 34 1 5.3037 -2.3651 0.5091 35 1 3.7657 -3.2610 0.5167 36 1 1.9929 -3.2527 0.0090 37 1 0.5363 -2.4154 0.0173 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065364.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:55 Heat of formation + Delta-G solvation = -30.383187 kcal Electronic energy + Delta-G solvation = -15612.336556 eV Core-core repulsion = 13158.991225 eV Total energy + Delta-G solvation = -2453.345331 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.74776 -37.08491 -35.41714 -34.39057 -33.73091 -31.15227 -28.88571 -27.52816 -27.20962 -25.03295 -22.20237 -21.77208 -20.87270 -18.43549 -18.16925 -17.83595 -16.53874 -15.85783 -15.38012 -15.13555 -14.89786 -14.57913 -14.32084 -14.00053 -13.96484 -13.74857 -13.47477 -13.16784 -12.79342 -12.75859 -12.56381 -12.47975 -12.37082 -12.06049 -11.77851 -11.38631 -11.32908 -11.27988 -10.84807 -10.55163 -9.38726 -8.22009 -8.12380 -6.30680 0.55370 0.75355 1.39443 1.40035 1.53796 2.41514 2.93998 3.10530 3.13127 3.94489 3.98368 4.06944 4.31996 4.46959 4.51982 4.60198 4.67892 4.68935 4.83280 4.86900 4.89911 4.92544 4.94047 5.10283 5.25122 5.26586 5.34716 5.41301 5.54697 5.56892 5.69495 5.75790 5.87149 5.98644 6.11209 6.27723 6.68306 6.86158 7.07388 7.38395 8.92736 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.037062 B = 0.004468 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.309615 B = 6265.681878 C = 6465.333828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.170 4.170 3 C -0.092 4.092 4 C -0.137 4.137 5 C -0.066 4.066 6 C -0.086 4.086 7 C 0.023 3.977 8 C -0.544 4.544 9 H 0.056 0.944 10 C -0.001 4.001 11 N -0.934 5.934 12 Si 0.966 3.034 13 H -0.264 1.264 14 H -0.276 1.276 15 H -0.276 1.276 16 C -0.092 4.092 17 C -0.170 4.170 18 C -0.100 4.100 19 C 0.202 3.798 20 N -0.867 5.867 21 H 0.074 0.926 22 H 0.065 0.935 23 H 0.074 0.926 24 H 0.119 0.881 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.044 0.956 29 H -0.008 1.008 30 H -0.008 1.008 31 H 0.264 0.736 32 H 0.119 0.881 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.404 0.596 37 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.155 -19.450 5.304 23.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.175 4.175 3 C -0.110 4.110 4 C -0.139 4.139 5 C -0.103 4.103 6 C -0.124 4.124 7 C -0.014 4.014 8 C -0.582 4.582 9 H 0.075 0.925 10 C -0.198 4.198 11 N -0.574 5.574 12 Si 0.790 3.210 13 H -0.188 1.188 14 H -0.201 1.201 15 H -0.201 1.201 16 C -0.110 4.110 17 C -0.175 4.175 18 C -0.157 4.157 19 C 0.097 3.903 20 N -0.410 5.410 21 H 0.092 0.908 22 H 0.084 0.916 23 H 0.093 0.907 24 H 0.137 0.863 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.010 0.990 30 H 0.010 0.990 31 H 0.073 0.927 32 H 0.137 0.863 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.235 0.765 37 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -11.065 -19.290 5.340 22.871 hybrid contribution 0.367 0.643 -0.690 1.012 sum -10.698 -18.648 4.650 21.995 Atomic orbital electron populations 1.20607 0.89525 1.03040 1.02543 1.19603 0.97089 0.91373 1.09398 1.20825 0.93308 0.97677 0.99215 1.19730 0.94116 0.94742 1.05336 1.20444 0.99164 0.93928 0.96788 1.21384 0.98900 0.96726 0.95386 1.19053 0.94140 0.92783 0.95465 1.21741 1.36038 1.06666 0.93758 0.92549 1.25994 0.95303 0.96593 1.01936 1.70108 1.39514 1.14583 1.33198 0.85389 0.78049 0.78272 0.79281 1.18772 1.20141 1.20148 1.20829 0.99574 0.91413 0.99212 1.19605 0.92171 0.96291 1.09398 1.20606 0.99733 0.92977 1.02396 1.17447 0.90662 0.86999 0.95154 1.42471 1.09257 1.04348 1.84952 0.90783 0.91593 0.90704 0.86340 0.92107 0.92102 0.93746 0.93748 0.98955 0.98964 0.92730 0.86329 0.91258 0.91316 0.90517 0.76497 0.76495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.81 9.57 71.24 0.68 -1.13 16 2 C -0.17 -4.31 5.90 -19.74 -0.12 -4.42 16 3 C -0.09 -2.78 9.35 22.25 0.21 -2.58 16 4 C -0.14 -4.59 5.14 -19.84 -0.10 -4.69 16 5 C -0.07 -2.50 5.34 29.84 0.16 -2.34 16 6 C -0.09 -3.90 5.13 30.59 0.16 -3.74 16 7 C 0.02 1.27 4.97 29.85 0.15 1.41 16 8 C -0.54 -32.57 9.11 25.60 0.23 -32.34 16 9 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 10 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 11 N -0.93 -58.48 13.29 21.45 0.28 -58.19 16 12 Si 0.97 45.62 29.54 68.60 2.03 47.64 16 13 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 15 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 16 C -0.09 -2.78 9.35 22.25 0.21 -2.58 16 17 C -0.17 -4.31 5.90 -19.73 -0.12 -4.42 16 18 C -0.10 -1.81 9.57 71.24 0.68 -1.13 16 19 C 0.20 4.75 6.72 38.22 0.26 5.01 16 20 N -0.87 -13.09 8.89 -51.37 -0.46 -13.55 16 21 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 22 H 0.07 1.20 8.09 -2.39 -0.02 1.18 16 23 H 0.07 1.04 6.56 -2.39 -0.02 1.02 16 24 H 0.12 3.47 8.06 -2.91 -0.02 3.44 16 25 H 0.06 2.28 8.08 -2.38 -0.02 2.26 16 26 H 0.06 2.28 8.08 -2.39 -0.02 2.26 16 27 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 29 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 30 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 31 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 32 H 0.12 3.47 8.06 -2.91 -0.02 3.44 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.20 8.09 -2.38 -0.02 1.18 16 35 H 0.08 1.02 6.55 -2.39 -0.02 1.01 16 36 H 0.40 4.58 6.83 -92.71 -0.63 3.95 16 37 H 0.40 4.58 6.83 -92.70 -0.63 3.95 16 Total: -1.00 -69.33 304.65 4.51 -64.82 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -0.21 Total: 11.80 kcal Atomic # 6 Polarization: -55.39 SS G_CDS: 2.86 Total: -52.53 kcal Atomic # 7 Polarization: -71.57 SS G_CDS: -0.17 Total: -71.74 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -69.33 4.51 -64.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065364.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.442 kcal (2) G-P(sol) polarization free energy of solvation -69.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds