Wall clock time and date at job start Thu Apr 9 2020 12:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 119.99638 * 2 1 4 4 C 1.39671 * 119.99776 * 179.72270 * 2 1 3 5 5 C 1.38933 * 120.07414 * 174.00716 * 4 2 1 6 6 C 1.38074 * 119.92980 * 179.79280 * 5 4 2 7 7 C 1.38316 * 120.07055 * 0.48166 * 6 5 4 8 8 C 1.38257 * 120.15110 * 359.74922 * 7 6 5 9 9 C 1.50698 * 119.96727 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47498 * 270.02586 * 9 8 7 11 11 C 1.52993 * 109.47283 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47227 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00153 * 359.97438 * 12 11 10 14 14 C 1.37882 * 120.00157 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99871 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00145 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46960 * 59.99863 * 16 14 12 18 18 H 1.48495 * 109.47535 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47020 * 300.00046 * 16 14 12 20 20 C 1.38131 * 120.07273 * 0.02562 * 8 7 6 21 21 H 1.09000 * 109.46913 * 185.33217 * 1 2 3 22 22 H 1.09004 * 109.47100 * 305.32943 * 1 2 3 23 23 H 1.09005 * 109.47093 * 65.33047 * 1 2 3 24 24 H 1.09003 * 109.46928 * 269.72319 * 3 2 1 25 25 H 1.08994 * 109.47541 * 29.72572 * 3 2 1 26 26 H 1.09002 * 109.46719 * 149.72706 * 3 2 1 27 27 H 1.08011 * 120.03508 * 0.02562 * 5 4 2 28 28 H 1.07996 * 119.97102 * 180.21282 * 6 5 4 29 29 H 1.08001 * 119.92465 * 179.76810 * 7 6 5 30 30 H 1.09001 * 109.46558 * 30.02346 * 9 8 7 31 31 H 1.08994 * 109.47622 * 150.02105 * 9 8 7 32 32 H 1.08999 * 109.46840 * 299.99993 * 10 9 8 33 33 H 1.09005 * 109.46740 * 59.99416 * 10 9 8 34 34 H 1.08999 * 109.47620 * 300.00058 * 11 10 9 35 35 H 1.08999 * 109.46906 * 60.00095 * 11 10 9 36 36 H 0.96999 * 119.99821 * 179.97438 * 15 14 12 37 37 H 1.08008 * 120.03553 * 179.97438 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1634 -1.2096 0.0059 5 6 3.5470 -1.2153 -0.1196 6 6 4.2347 -2.4126 -0.1092 7 6 3.5467 -3.6060 0.0160 8 6 2.1694 -3.6042 0.1363 9 6 1.4240 -4.9068 0.2720 10 6 1.0468 -5.4257 -1.1171 11 6 0.2906 -6.7485 -0.9793 12 6 -0.0804 -7.2599 -2.3475 13 1 0.1953 -6.6975 -3.2273 14 6 -0.7726 -8.4454 -2.4761 15 7 -1.1097 -9.1296 -1.4047 16 14 -1.2331 -9.0789 -4.1720 17 1 -0.0002 -9.2949 -4.9713 18 1 -1.9680 -10.3623 -4.0384 19 1 -2.0974 -8.0829 -4.8546 20 6 1.4757 -2.4097 0.1313 21 1 -0.3633 -1.0232 0.0955 22 1 -0.3633 0.5943 0.8384 23 1 -0.3633 0.4289 -0.9339 24 1 2.3834 1.5809 -1.0277 25 1 1.6063 2.0296 0.5095 26 1 3.1478 1.1396 0.5181 27 1 4.0845 -0.2840 -0.2215 28 1 5.3106 -2.4176 -0.2032 29 1 4.0867 -4.5413 0.0202 30 1 2.0584 -5.6380 0.7730 31 1 0.5192 -4.7484 0.8586 32 1 0.4124 -4.6946 -1.6181 33 1 1.9517 -5.5842 -1.7037 34 1 0.9253 -7.4796 -0.4784 35 1 -0.6143 -6.5904 -0.3925 36 1 -1.5970 -9.9634 -1.4952 37 1 0.3997 -2.4091 0.2249 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065535.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:57 Heat of formation + Delta-G solvation = 14.039205 kcal Electronic energy + Delta-G solvation = -15581.816272 eV Core-core repulsion = 13130.397241 eV Total energy + Delta-G solvation = -2451.419031 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.53636 -36.51161 -34.38794 -32.50334 -30.53974 -29.78643 -28.40693 -26.42968 -24.73915 -23.43935 -21.44291 -20.40215 -19.70339 -17.16951 -16.12907 -15.77602 -15.30130 -15.10896 -14.46411 -14.26568 -13.94302 -13.24660 -13.20216 -12.75908 -12.67814 -12.32801 -12.05453 -11.89405 -11.68678 -11.31400 -11.05702 -10.77029 -10.65326 -10.61524 -10.37244 -9.69555 -9.57899 -9.26621 -9.05574 -8.33982 -8.29161 -7.17628 -5.94658 -3.96596 1.69580 1.85266 3.13380 3.36862 3.40754 3.43790 4.11997 4.50684 4.87320 4.91642 5.14620 5.20173 5.27515 5.40323 5.40848 5.48823 5.51178 5.63018 5.72319 5.73682 5.84922 6.09067 6.15953 6.22576 6.40945 6.54672 6.71369 6.78403 6.99211 7.04124 7.16099 7.22690 7.29281 7.61392 7.74389 7.90188 8.06463 8.49737 9.10569 9.67012 11.16677 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.034866 B = 0.004498 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.871549 B = 6223.905618 C = 6555.125189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.643 5.643 3 C 0.098 3.902 4 C 0.210 3.790 5 C -0.211 4.211 6 C -0.074 4.074 7 C -0.175 4.175 8 C -0.018 4.018 9 C -0.086 4.086 10 C -0.101 4.101 11 C 0.020 3.980 12 C -0.519 4.519 13 H 0.054 0.946 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.196 4.196 21 H 0.081 0.919 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.044 0.956 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.016 0.984 35 H 0.015 0.985 36 H 0.260 0.740 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.889 18.603 4.532 20.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.356 5.356 3 C -0.045 4.045 4 C 0.110 3.890 5 C -0.233 4.233 6 C -0.093 4.093 7 C -0.195 4.195 8 C -0.019 4.019 9 C -0.123 4.123 10 C -0.139 4.139 11 C -0.017 4.017 12 C -0.558 4.558 13 H 0.072 0.928 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.218 4.218 21 H 0.100 0.900 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.136 0.864 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.034 0.966 35 H 0.033 0.967 36 H 0.070 0.930 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.695 18.612 4.586 20.304 hybrid contribution -0.323 -0.326 -0.966 1.069 sum 6.371 18.286 3.620 19.699 Atomic orbital electron populations 1.21686 0.79691 1.03395 1.00587 1.46235 1.04882 1.03057 1.81471 1.21527 0.97042 0.85137 1.00820 1.17804 0.91240 0.85500 0.94418 1.20527 0.92209 0.98314 1.12254 1.20821 0.99047 0.92049 0.97351 1.20867 0.93901 0.97830 1.06900 1.19932 0.93600 0.94871 0.93495 1.20811 0.99045 0.92479 1.00006 1.21597 0.99889 0.99309 0.93073 1.19122 0.94983 0.90641 0.96922 1.21251 1.35459 1.06131 0.92934 0.92801 1.25022 0.96030 0.96868 0.96544 1.69959 1.39959 1.15546 1.28184 0.86674 0.78611 0.78055 0.84752 1.20250 1.21311 1.20291 1.20629 0.99653 0.90682 1.10872 0.90045 0.92976 0.93215 0.93781 0.91938 0.91573 0.86729 0.86596 0.86441 0.91343 0.91590 0.93432 0.93280 0.96588 0.96652 0.93018 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.90 10.62 59.85 0.64 1.53 16 2 N -0.64 -7.59 3.41 -187.54 -0.64 -8.23 16 3 C 0.10 0.85 10.09 59.85 0.60 1.46 16 4 C 0.21 2.98 6.53 -83.79 -0.55 2.43 16 5 C -0.21 -2.79 9.16 -39.38 -0.36 -3.15 16 6 C -0.07 -1.00 10.04 -39.61 -0.40 -1.39 16 7 C -0.18 -2.67 9.70 -39.55 -0.38 -3.06 16 8 C -0.02 -0.30 5.13 -104.65 -0.54 -0.84 16 9 C -0.09 -1.55 5.34 -27.88 -0.15 -1.70 16 10 C -0.10 -2.18 5.13 -26.74 -0.14 -2.32 16 11 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 12 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 13 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -27.42 13.29 55.43 0.74 -26.69 16 16 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C -0.20 -3.04 8.97 -39.38 -0.35 -3.39 16 21 H 0.08 0.87 5.31 -51.93 -0.28 0.59 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.43 8.07 -51.93 -0.42 0.01 16 26 H 0.07 0.54 6.48 -51.93 -0.34 0.20 16 27 H 0.11 1.26 6.33 -52.48 -0.33 0.93 16 28 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 31 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.12 1.79 5.74 -52.48 -0.30 1.49 16 LS Contribution 305.07 15.07 4.60 4.60 Total: -1.00 -31.74 305.07 -8.35 -40.09 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -5.85 Total: -2.89 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -2.18 Total: -23.92 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.10 Total: -34.91 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.74 -8.35 -40.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065535.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.130 kcal (2) G-P(sol) polarization free energy of solvation -31.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds